Os09g0502900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0502900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.94 | 0.325 | 8.86 | -0.103 | 0.275 | 1.11 | 0.534 | 0.37 | -0.279 | 14.5 | 10.15 | 587 | -- | -- |
| 48.04 | 0.323 | 8.87 | -0.162 | 0.268 | 1.12 | 0.542 | -- | -0.295 | 14.6 | 10.6 | 573 | -- | -- |
| 48.85 | 0.326 | 8.86 | -0.0647 | 0.196 | 1.16 | -- | 0.504 | -0.275 | 14.4 | 9.651 | 472 | -- | -- |
| 49.02 | 0.326 | 8.87 | -0.155 | 0.245 | 1.15 | -- | -- | -0.296 | 14.3 | 9.716 | 540 | -- | -- |
| 49.6 | 0.328 | 8.86 | -0.0587 | -- | 1.28 | -- | 0.721 | -0.283 | -- | 10.45 | 332 | -- | -- |
| 62.91 | 0.372 | 8.84 | 0.11 | 0.444 | -- | 0.809 | -- | -0.128 | 16.9 | -- | -- | -- | -- |
| 64.6 | 0.376 | 8.84 | 0.113 | 0.45 | -- | -- | -- | -0.124 | 16.9 | -- | -- | -- | -- |
| 49.37 | 0.327 | 8.87 | -0.134 | -- | 1.02 | -- | -- | -0.303 | -- | 19.88 | 331 | -- | -- |
| 49.57 | 0.328 | 8.86 | -- | 0.217 | 1.1 | -- | -- | -0.272 | 14.7 | 13.85 | 485 | -- | -- |
| 75.26 | 0.405 | 8.83 | 0.0964 | -- | -- | -- | -- | -0.135 | -- | -- | -- | -- | -- |
| 64.94 | 0.377 | 8.84 | -- | 0.448 | -- | -- | -- | -0.136 | 17 | -- | -- | -- | -- |
| 49.73 | 0.328 | 8.86 | -- | -- | 0.953 | -- | -- | -0.27 | -- | 22.16 | 284 | -- | -- |
| 75.5 | 0.406 | 8.84 | -- | -- | -- | -- | -- | -0.146 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.01 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 2 | 46.01 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 6 | 46.30 | temperature | 20.0 | 720 | > th | dose dependent | sin | 4 | NA |
| 8 | 46.44 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 76 | 47.25 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 114 | 47.59 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 117 | 47.61 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 123 | 47.65 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 133 | 47.70 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 139 | 47.74 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 140 | 47.74 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 3 | 19 |
| 180 | 47.92 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 181 | 47.93 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 20 |
| 202 | 48.04 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 208 | 48.07 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 237 | 48.16 | temperature | 15.0 | 720 | > th | dose dependent | no | NA | NA |
| 330 | 48.44 | temperature | 20.0 | 270 | > th | dose dependent | sin | 23 | NA |
| 334 | 48.45 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 369 | 48.54 | temperature | 30.0 | 720 | < th | dose independent | rect. | 14 | 22 |
| 386 | 48.60 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 14 |
| 417 | 48.67 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 432 | 48.70 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 441 | 48.73 | wind | 9.0 | 43200 | > th | dose dependent | sin | 12 | NA |
| 493 | 48.86 | temperature | 30.0 | 720 | < th | dose dependent | sin | 3 | NA |
| 512 | 48.90 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 519 | 48.92 | temperature | 30.0 | 720 | < th | dose independent | rect. | 24 | 21 |
| 559 | 49.00 | wind | 9.0 | 43200 | > th | dose independent | rect. | 17 | 16 |
| 569 | 49.03 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 2 |
| 582 | 49.05 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 610 | 49.11 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 18 | 17 |
| 614 | 49.12 | temperature | 30.0 | 720 | < th | dose independent | rect. | 9 | 18 |
| 677 | 49.20 | temperature | 30.0 | 720 | < th | dose independent | rect. | 9 | 12 |
| 716 | 49.24 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 761 | 49.32 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 763 | 49.32 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 775 | 49.34 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 15 | 21 |
| 789 | 49.36 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 791 | 49.36 | temperature | 30.0 | 720 | < th | dose independent | rect. | 24 | 23 |
| 856 | 49.44 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 861 | 49.45 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 874 | 49.46 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 878 | 49.46 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 884 | 49.46 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 14 | 18 |
| 970 | 49.60 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 5 | 13 |