BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0502900 Os09g0502900|003-006-E03
(348 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G18150.1 | chr3:6217929-6219500 FORWARD LENGTH=457 54 1e-07
AT5G02700.1 | chr5:609381-611679 REVERSE LENGTH=457 51 9e-07
AT3G28410.1 | chr3:10640152-10642071 REVERSE LENGTH=466 49 5e-06
AT3G03360.1 | chr3:795218-796918 FORWARD LENGTH=482 48 6e-06
>AT3G18150.1 | chr3:6217929-6219500 FORWARD LENGTH=457
Length = 456
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 132/287 (45%), Gaps = 43/287 (14%)
Query: 66 IWRRIHCLMPMRDAARVACVSRAFLNSWLCYPNLTFNKDTLGLDEHVCETDFISKVDHIL 125
I + I +P + A + +S+ + + W P+L+FN ++ E FI D L
Sbjct: 40 ILQHILSFIPTKLAITTSLLSKRWRHVWCDTPSLSFN-------DYRLEAPFI---DETL 89
Query: 126 KRHSGTCVKTFKLEVPYELDVCDHVDRWLQFAITPAIEELTLTLYG-TAQKYNFPCSL-L 183
R++ + + F L ++ H++ W++FA++ ++ L+L L+ A K+ FP +
Sbjct: 90 TRYTASKMMRFHLHTSL-INNVPHLESWIKFAMSRNVDHLSLDLWNQVANKFKFPDFFHI 148
Query: 184 SDGMADSIRILDLGHC--AFCPTIEPGSWRSLKRLCLSFVRITEDDLGCLLLNSLALEGM 241
+ + +LD A C LK+L LS ++++ + +L LE +
Sbjct: 149 NSSLKQLTVVLDFSDTMIAIC----------LKKLYLSTCLLSDESMANILFGCPILESL 198
Query: 242 ELRHCDEIVSLKIPCTLQQLSY-----ITVSECSRVRVIENKAPNVSSFYFTGNKVKLSL 296
L HC + L + +L+ + I V E + ++++ AP+ +K+ SL
Sbjct: 199 TLDHCGGLRVLDLSKSLRLRTLEINCNIWVPELTAMQIV---APHTHCLRLRNSKLPCSL 255
Query: 297 GEWLQVK--KLNM---RSSRIVR--YARATLPSMMP---NVETLSIG 333
+ +K KLN+ S+ ++ + + TL M+ NVE L++G
Sbjct: 256 VDVSSLKEAKLNICIDSFSKTIKADFLQVTLLKMLEKLHNVEKLTLG 302
>AT5G02700.1 | chr5:609381-611679 REVERSE LENGTH=457
Length = 456
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 87/191 (45%), Gaps = 26/191 (13%)
Query: 62 LSKDIWRRIHCLMPMRDAARVACVSRAFLNSWLCYPNLTFNKDTLGLDEHVCETDFISKV 121
+ DI I +P A R + +SR + + W P L +H +
Sbjct: 32 MPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETPCLDITL------KH-------GAM 78
Query: 122 DHILKRHSGTCVKTFKLEVPYELDVCDHVDRWLQFAITPAIEELTLTL--YGTAQKYNFP 179
+ L ++ + +FKL + + VD W++FA++ ++ L++ + + ++ Y FP
Sbjct: 79 NQTLTSYTAPIITSFKLVMDLNSNTVPQVDSWIEFALSRNVQNLSVFVRDFTYSKTYRFP 138
Query: 180 CSLLSDGMADSIRILDLGHCAF--CPTIEPGSWRSLKRLCLSFVRITEDDL-----GCLL 232
++ S+++LD+ F PT SW+SL+ L L F +I ++ + GC +
Sbjct: 139 DIFY---LSSSLKLLDVTLDFFDMIPTCT-VSWKSLRNLTLRFCQIPDESIHNILSGCPI 194
Query: 233 LNSLALEGMEL 243
L SL L+ L
Sbjct: 195 LESLTLDTCRL 205
>AT3G28410.1 | chr3:10640152-10642071 REVERSE LENGTH=466
Length = 465
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 84/191 (43%), Gaps = 26/191 (13%)
Query: 62 LSKDIWRRIHCLMPMRDAARVACVSRAFLNSWLCYPNLTFNKDTLGLDEHVCETDFISKV 121
+ DI I +P A R + +SR + + W P L +H +
Sbjct: 33 MPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETPCLDIKL------KH-------GET 79
Query: 122 DHILKRHSGTCVKTFKLEVPYELDVCDHVDRWLQFAITPAIEELTLTL--YGTAQKYNFP 179
+ L ++ + +FKL + + VD W++FA++ ++ L++ + + + Y FP
Sbjct: 80 NQTLTSYTAPIITSFKLVMDLNDNTVPQVDSWIEFALSRNVQNLSVFVRDFTYTKTYRFP 139
Query: 180 CSLLSDGMADSIRILD--LGHCAFCPTIEPGSWRSLKRLCLSFVRITEDDL-----GCLL 232
++ S++ LD L PT SW+SL+ L L F +I ++ + GC +
Sbjct: 140 DIFY---ISSSLKQLDVTLDFFDMIPTCA-VSWKSLRNLTLRFCQIPDESMHNILSGCPI 195
Query: 233 LNSLALEGMEL 243
L SL L+ L
Sbjct: 196 LESLTLDTCRL 206
>AT3G03360.1 | chr3:795218-796918 FORWARD LENGTH=482
Length = 481
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 95/212 (44%), Gaps = 25/212 (11%)
Query: 55 MKNSGMLLSK---DIWRRIHCLMPMRDAARVACVSRAFLNSWLCYPNLTFNKDTLGLDEH 111
+K +G L+S+ DI + I +P R A + + +SR + + W +L+F++D +
Sbjct: 32 LKEAGDLISRLPDDILQLILSYLPTRLAIKTSVLSRRWRHVWSDTWSLSFHRDR---PDA 88
Query: 112 VCETDFISKVDHILKRHSGTCVKTFKL------EVPYELDVCDHVDRWLQFAITPAIEEL 165
C ++ IL R+ + +F++ D +D W+ FA++ +E
Sbjct: 89 PC-------INRILDRYRAPKMMSFRICSCCRAACISRPDTHADIDSWINFAMSRNVE-- 139
Query: 166 TLTLYGTAQKYNFPCSLLSDGMADSIRILDLGHCAFCPTIEPG---SWRSLKRLCLSFVR 222
L+LY KY+ P L + + LD G ++ P SW SLK L L
Sbjct: 140 NLSLYLDEDKYDIPEFLYINSSLKQL-YLDFGCKKDFISLNPKCSVSWTSLKNLSLYHCN 198
Query: 223 ITEDDLGCLLLNSLALEGMELRHCDEIVSLKI 254
I+++ + +L LE + L C ++ L +
Sbjct: 199 ISDESIAIILSGCPILESLLLFFCKKLKVLDL 230
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.136 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,201,828
Number of extensions: 288073
Number of successful extensions: 792
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 802
Number of HSP's successfully gapped: 8
Length of query: 348
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 249
Effective length of database: 8,392,385
Effective search space: 2089703865
Effective search space used: 2089703865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 112 (47.8 bits)