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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0218200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.81 (0.0399) R2 : 0.629
β1 : -0.838 (0.149) R2dD : 0.0304 R2D : -0.0269
β2 : -- (--) R2dC : -- R2C : --
β3 : -4.89 (0.184) R2dE : 0.673 R2E : 0.599
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.113 (0.0893) R2dN8 : 0.00152 R2N8 : -0.0201
σ : 0.735
deviance : 249.1
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 30.27
memory length : 441
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 21.8
open length of G : 21.2

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
235.45 0.721 5.84 -0.883 1.07 -4.92 0.212 -0.31 -0.17 1.69 30.11 279 20.7 22.3
235.47 0.715 5.84 -0.911 1.06 -4.9 0.209 -- -0.172 1.66 30.16 282 20.7 22.3
235.5 0.715 5.84 -0.895 1.06 -4.92 -- -0.18 -0.176 1.71 30.08 285 20.7 22.3
235.53 0.715 5.84 -0.928 1.04 -4.91 -- -- -0.18 1.75 30.15 285 20.6 22.3
249.87 0.736 5.83 -0.989 -- -4.85 -- 0.864 -0.106 -- 30.49 436 21.8 21.3
509.33 1.06 5.68 0.213 1.48 -- 0.159 -- 0.718 20.4 -- -- -- --
509.41 1.06 5.68 0.208 1.48 -- -- -- 0.718 20.4 -- -- -- --
249.1 0.735 5.81 -0.838 -- -4.89 -- -- -0.113 -- 30.27 441 21.8 21.2
256.2 0.745 5.81 -- 0.95 -4.47 -- -- -0.00796 1.22 30.25 284 20.7 22.3
632.4 1.18 5.64 0.2 -- -- -- -- 0.703 -- -- -- -- --
510.55 1.06 5.68 -- 1.48 -- -- -- 0.694 20.5 -- -- -- --
265.82 0.759 5.78 -- -- -4.58 -- -- 0.0591 -- 30.5 420 21.7 20.9
633.46 1.17 5.64 -- -- -- -- -- 0.68 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 236.46 temperature 30 270 < th dose dependent rect. 21 22
6 245.35 temperature 15 270 > th dose dependent rect. 16 23
16 253.44 temperature 30 270 < th dose dependent no NA NA
22 258.10 temperature 30 270 < th dose dependent rect. 10 23
25 258.54 temperature 30 270 < th dose dependent rect. 13 23
39 262.65 temperature 30 1440 < th dose dependent rect. 23 13
41 262.79 temperature 30 1440 < th dose dependent rect. 1 10
45 262.95 temperature 30 720 < th dose dependent rect. 17 21
55 263.28 temperature 30 1440 < th dose dependent sin 7 NA
62 263.44 temperature 10 1440 > th dose dependent rect. 23 12
139 264.70 temperature 10 1440 > th dose dependent sin 8 NA
175 265.34 temperature 15 720 > th dose dependent rect. 18 19
413 267.77 temperature 25 1440 < th dose dependent rect. 1 23
419 267.81 temperature 30 1440 < th dose dependent no NA NA
432 267.91 temperature 25 1440 < th dose dependent rect. 3 23
464 268.14 temperature 30 1440 < th dose dependent rect. 8 23
664 269.68 temperature 15 270 > th dose dependent rect. 3 23
685 269.94 temperature 10 270 > th dose dependent no NA NA
692 270.01 temperature 25 4320 < th dose dependent rect. 21 1
835 271.48 temperature 15 270 > th dose dependent rect. 5 23
846 271.56 temperature 25 1440 < th dose dependent rect. 6 1
882 271.93 temperature 10 270 > th dose dependent sin 7 NA
896 271.98 temperature 10 10 > th dose dependent no NA NA
929 272.24 temperature 30 30 < th dose dependent rect. 11 23
972 272.54 temperature 30 30 < th dose dependent rect. 15 23