Os06g0142100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os06g0142100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Cyclin-like F-box domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.33 | 0.25 | 11.5 | 1.17 | 0.606 | 0.605 | -0.176 | 0.0123 | 0.239 | 16.9 | 29.2 | 1544 | -- | -- |
| 28.33 | 0.248 | 11.5 | 1.17 | 0.603 | 0.604 | -0.178 | -- | 0.24 | 16.9 | 29.2 | 1537 | -- | -- |
| 28.41 | 0.248 | 11.5 | 1.17 | 0.603 | 0.602 | -- | 0.0092 | 0.238 | 16.8 | 29.22 | 1539 | -- | -- |
| 28.41 | 0.248 | 11.5 | 1.17 | 0.602 | 0.602 | -- | -- | 0.238 | 16.8 | 29.22 | 1537 | -- | -- |
| 45.81 | 0.315 | 11.5 | 1.05 | -- | 0.577 | -- | 0.461 | 0.164 | -- | 29.27 | 5658 | -- | -- |
| 44.6 | 0.313 | 11.5 | 0.982 | 0.604 | -- | -0.0675 | -- | 0.177 | 16.7 | -- | -- | -- | -- |
| 44.61 | 0.313 | 11.5 | 0.981 | 0.603 | -- | -- | -- | 0.177 | 16.7 | -- | -- | -- | -- |
| 45.86 | 0.315 | 11.5 | 1.16 | -- | 0.616 | -- | -- | 0.172 | -- | 29.36 | 5681 | -- | -- |
| 63.71 | 0.372 | 11.5 | -- | 0.555 | 0.477 | -- | -- | 0.127 | 17.1 | 29.15 | 1620 | -- | -- |
| 63.93 | 0.374 | 11.5 | 0.958 | -- | -- | -- | -- | 0.161 | -- | -- | -- | -- | -- |
| 70 | 0.391 | 11.6 | -- | 0.585 | -- | -- | -- | 0.0677 | 16.7 | -- | -- | -- | -- |
| 79.33 | 0.415 | 11.6 | -- | -- | 0.421 | -- | -- | -0.0453 | -- | 30.47 | 1473 | -- | -- |
| 88.16 | 0.438 | 11.6 | -- | -- | -- | -- | -- | 0.0549 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.89 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 5 | 10 |
| 4 | 26.52 | temperature | 10.0 | 270 | > th | dose dependent | sin | 4 | NA |
| 5 | 26.55 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 1 | 14 |
| 11 | 26.70 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 18 | 17 |
| 13 | 26.80 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 20 | 15 |
| 17 | 26.94 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 18 | 19 |
| 18 | 26.96 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 19 | 17 |
| 55 | 27.30 | temperature | 20.0 | 720 | > th | dose dependent | sin | 8 | NA |
| 83 | 27.62 | temperature | 30.0 | 270 | < th | dose dependent | sin | 3 | NA |
| 104 | 27.74 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 22 |
| 108 | 27.76 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 22 |
| 112 | 27.79 | temperature | 10.0 | 720 | > th | dose dependent | sin | 8 | NA |
| 128 | 27.88 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 146 | 27.97 | temperature | 30.0 | 720 | < th | dose dependent | sin | 8 | NA |
| 147 | 27.97 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 5 | 4 |
| 178 | 28.13 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 10 |
| 201 | 28.30 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 10 |
| 209 | 28.33 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 7 | 1 |
| 216 | 28.35 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 10 |
| 221 | 28.38 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 20 | 22 |
| 226 | 28.43 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 246 | 28.49 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 255 | 28.52 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 264 | 28.54 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 18 | 22 |
| 266 | 28.55 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 3 | 19 |
| 288 | 28.62 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 292 | 28.62 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 23 |
| 343 | 28.75 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 344 | 28.75 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 368 | 28.78 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 384 | 28.80 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 385 | 28.80 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 2 | 9 |
| 387 | 28.81 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 417 | 28.85 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 445 | 28.89 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 11 | 6 |
| 454 | 28.90 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 466 | 28.91 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 468 | 28.91 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 6 | 16 |
| 476 | 28.93 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 478 | 28.93 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 4 | 11 |
| 585 | 29.01 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 634 | 29.03 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 5 | 18 |
| 651 | 29.04 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 2 | NA |
| 713 | 29.08 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 764 | 29.11 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 769 | 29.11 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 770 | 29.11 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 17 | 3 |
| 789 | 29.12 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 825 | 29.13 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 832 | 29.14 | atmosphere | 1000.0 | 43200 | < th | dose dependent | sin | 22 | NA |
| 833 | 29.14 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 848 | 29.15 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 858 | 29.15 | temperature | 20.0 | 1440 | > th | dose dependent | no | NA | NA |
| 873 | 29.16 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 896 | 29.17 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 921 | 29.18 | temperature | 15.0 | 270 | > th | dose dependent | no | NA | NA |
| 945 | 29.18 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 947 | 29.19 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 973 | 29.20 | temperature | 30.0 | 270 | < th | dose dependent | no | NA | NA |
| 992 | 29.21 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 4 | 4 |