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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0500100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.84 (0.0362) R2 : 0.652
β1 : 1.88 (0.134) R2dD : 0.162 R2D : 0.139
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.54 (0.139) R2dE : 0.279 R2E : 0.396
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.915 (0.0797) R2dN8 : 0.146 R2N8 : 0.149
σ : 0.672
deviance : 206.43
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C
peak time of C : --
E
wheather : temperature
threshold : 20.55
memory length : 10
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
195.99 0.658 4.81 2.2 0.415 2.86 0.499 2.5 0.956 1.41 19.5 9 -- --
198.17 0.661 4.86 1.78 0.442 2.95 -0.237 -- 0.839 1.6 20.55 10 -- --
196.37 0.658 4.82 2.11 0.409 2.89 -- 2 0.936 1.41 19.5 8 -- --
198.39 0.66 4.86 1.78 0.445 2.96 -- -- 0.839 1.51 20.55 10 -- --
203.25 0.668 4.8 2.22 -- 2.48 -- 2.15 1.01 -- 19.5 10 -- --
326.06 0.847 4.75 2.37 0.674 -- 1.08 -- 1.33 15.1 -- -- -- --
329.9 0.851 4.74 2.39 0.676 -- -- -- 1.34 15 -- -- -- --
206.43 0.672 4.84 1.88 -- 2.54 -- -- 0.915 -- 20.55 10 -- --
275.62 0.773 4.92 -- 0.68 3.58 -- -- 0.544 1.82 19.5 12 -- --
356.21 0.882 4.74 2.36 -- -- -- -- 1.32 -- -- -- -- --
480.79 1.03 4.8 -- 0.629 -- -- -- 1.07 14.9 -- -- -- --
291.43 0.795 4.9 -- -- 3.1 -- -- 0.645 -- 18.14 95 -- --
503.61 1.05 4.8 -- -- -- -- -- 1.06 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 193.73 temperature 20 1440 > th dose dependent rect. 21 1
3 194.10 temperature 20 1440 > th dose dependent rect. 5 2
4 194.11 temperature 20 1440 > th dose dependent rect. 19 14
21 195.15 temperature 20 1440 > th dose dependent sin 10 NA
24 195.21 temperature 20 10 > th dose dependent rect. 23 23
31 195.53 temperature 20 1440 > th dose dependent rect. 3 5
56 196.28 temperature 20 10 > th dose dependent no NA NA
75 196.89 temperature 20 1440 > th dose dependent rect. 1 8
92 197.35 temperature 20 10 > th dose dependent rect. 3 23
94 197.42 temperature 30 1440 < th dose dependent rect. 20 2
150 198.90 temperature 25 1440 < th dose independent rect. 20 2
221 200.54 temperature 20 10 > th dose dependent rect. 21 23
233 200.81 temperature 20 10 > th dose dependent rect. 7 23
248 201.14 temperature 20 90 > th dose dependent rect. 20 23
259 201.42 temperature 30 10 < th dose dependent rect. 11 23
304 201.83 temperature 20 90 > th dose dependent rect. 6 23
314 201.94 temperature 30 1440 < th dose dependent rect. 18 15
318 201.95 temperature 30 10 < th dose dependent rect. 19 23
320 201.97 temperature 20 10 > th dose dependent rect. 1 23
367 202.40 temperature 30 10 < th dose dependent no NA NA
378 202.58 temperature 30 10 < th dose dependent rect. 15 23
492 203.39 temperature 30 30 < th dose dependent rect. 13 23
520 203.55 temperature 30 10 < th dose dependent rect. 17 23
534 203.71 temperature 30 1440 < th dose dependent sin 12 NA
544 203.78 temperature 20 1440 > th dose dependent no NA NA
567 203.87 temperature 30 10 < th dose dependent rect. 9 23
627 204.20 temperature 25 1440 > th dose independent rect. 20 2
663 204.41 temperature 20 1440 > th dose dependent rect. 2 23
676 204.45 temperature 20 1440 > th dose dependent rect. 5 23
693 204.51 temperature 25 1440 > th dose independent rect. 18 4
747 204.80 temperature 20 10 > th dose dependent rect. 9 23
748 204.80 temperature 30 10 < th dose dependent rect. 1 23
760 204.90 temperature 20 270 > th dose dependent rect. 16 23
818 205.16 temperature 20 270 > th dose dependent rect. 14 23
989 206.00 temperature 30 10 < th dose dependent rect. 21 23