BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0105600 Os03g0105600|J033139L01
(133 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0105600 Similar to Tubulin beta-2 chain (Beta-2 tubulin) 278 6e-76
Os01g0805900 Tubulin beta-2 chain (Beta-2 tubulin) 270 2e-73
Os05g0413200 Beta-tubulin 268 8e-73
Os01g0282800 Similar to Tubulin beta-5 chain (Beta-5 tubulin) 268 1e-72
Os03g0780600 Tubulin beta-1 chain (Beta-1 tubulin) 265 6e-72
Os02g0167300 Tubulin beta-3 chain (Beta-3 tubulin) 265 9e-72
Os06g0671900 Similar to Beta-tubulin 264 1e-71
AK109162 249 5e-67
Os03g0661300 Beta-tubulin (Beta-3 tubulin) (Tubulin beta su... 247 1e-66
AK110204 231 1e-61
AK110638 165 1e-41
AK106047 130 2e-31
Os07g0574800 Tubulin alpha-1 chain 129 5e-31
Os03g0219300 Similar to Tubulin alpha-2 chain (Alpha-2 tubu... 128 1e-30
Os11g0247300 Alfa-tubulin 125 8e-30
Os03g0726100 Similar to Tubulin alpha-1 chain (Alpha-1 tubu... 124 2e-29
AK067478 122 6e-29
AK105538 119 4e-28
Os05g0156600 Similar to Tubulin gamma-1 chain (Gamma-1 tubu... 108 1e-24
>Os03g0105600 Similar to Tubulin beta-2 chain (Beta-2 tubulin)
Length = 133
Score = 278 bits (712), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 133/133 (100%), Positives = 133/133 (100%)
Query: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDATGRYDGDSDLQLERVNVYYNEASCGRFV 60
MREILHIQGGQCGNQIGAKFWEVVCAEHGIDATGRYDGDSDLQLERVNVYYNEASCGRFV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDATGRYDGDSDLQLERVNVYYNEASCGRFV 60
Query: 61 PRAVLMDLEPGTMDSVRSGPYGHIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
PRAVLMDLEPGTMDSVRSGPYGHIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGHIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
Query: 121 RKEAENCDCLQGN 133
RKEAENCDCLQGN
Sbjct: 121 RKEAENCDCLQGN 133
>Os01g0805900 Tubulin beta-2 chain (Beta-2 tubulin)
Length = 447
Score = 270 bits (691), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 125/132 (94%), Positives = 128/132 (96%)
Query: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDATGRYDGDSDLQLERVNVYYNEASCGRFV 60
MREILHIQGGQCGNQIGAKFWEVVC EHGID TGRY G+SDLQLERVNVYYNEASCGRFV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGNSDLQLERVNVYYNEASCGRFV 60
Query: 61 PRAVLMDLEPGTMDSVRSGPYGHIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
PRAVLMDLEPGTMDSVR+GPYG IFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 121 RKEAENCDCLQG 132
RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132
>Os05g0413200 Beta-tubulin
Length = 444
Score = 268 bits (685), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 124/132 (93%), Positives = 127/132 (96%)
Query: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDATGRYDGDSDLQLERVNVYYNEASCGRFV 60
MREILHIQGGQCGNQIG+KFWEVVC EHGID TGRY G SDLQLERVNVYYNEASCGRFV
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGTSDLQLERVNVYYNEASCGRFV 60
Query: 61 PRAVLMDLEPGTMDSVRSGPYGHIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
PRAVLMDLEPGTMDSVR+GPYG IFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 121 RKEAENCDCLQG 132
RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132
>Os01g0282800 Similar to Tubulin beta-5 chain (Beta-5 tubulin)
Length = 447
Score = 268 bits (684), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 124/132 (93%), Positives = 127/132 (96%)
Query: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDATGRYDGDSDLQLERVNVYYNEASCGRFV 60
MREILHIQGGQCGNQIG+KFWEVVC EHGID TGRY G SDLQLERVNVYYNEASCGRFV
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFV 60
Query: 61 PRAVLMDLEPGTMDSVRSGPYGHIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
PRAVLMDLEPGTMDSVR+GPYG IFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 121 RKEAENCDCLQG 132
RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132
>Os03g0780600 Tubulin beta-1 chain (Beta-1 tubulin)
Length = 444
Score = 265 bits (678), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 122/132 (92%), Positives = 128/132 (96%)
Query: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDATGRYDGDSDLQLERVNVYYNEASCGRFV 60
MREILHIQGGQCGNQIGAKFWEV+C EHG+DATGRY GDSDLQLER+NVYYNEAS GR+V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGVDATGRYAGDSDLQLERINVYYNEASGGRYV 60
Query: 61 PRAVLMDLEPGTMDSVRSGPYGHIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
PRAVLMDLEPGTMDSVRSGP+G IFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 121 RKEAENCDCLQG 132
RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132
>Os02g0167300 Tubulin beta-3 chain (Beta-3 tubulin)
Length = 447
Score = 265 bits (676), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 122/132 (92%), Positives = 127/132 (96%)
Query: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDATGRYDGDSDLQLERVNVYYNEASCGRFV 60
MREILHIQGGQCGNQIGAKFWEV+C EHGID TG+Y GDSDLQLER+NVYYNEAS GRFV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRFV 60
Query: 61 PRAVLMDLEPGTMDSVRSGPYGHIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
PRAVLMDLEPGTMDSVRSGP+G IFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 121 RKEAENCDCLQG 132
RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132
>Os06g0671900 Similar to Beta-tubulin
Length = 433
Score = 264 bits (675), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 122/132 (92%), Positives = 127/132 (96%)
Query: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDATGRYDGDSDLQLERVNVYYNEASCGRFV 60
MREILHIQGGQCGNQIGAKFWEV+C EHGID TG+Y GDSDLQLER+NVYYNEAS GR+V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYV 60
Query: 61 PRAVLMDLEPGTMDSVRSGPYGHIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
PRAVLMDLEPGTMDSVRSGPYG IFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 121 RKEAENCDCLQG 132
RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132
>AK109162
Length = 444
Score = 249 bits (635), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 112/132 (84%), Positives = 124/132 (93%)
Query: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDATGRYDGDSDLQLERVNVYYNEASCGRFV 60
MREI+HIQ GQCGNQIGAKFWEV+ EHGID TG Y GDSDLQLER+NVY+NEA+ G++V
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYFNEATGGKYV 60
Query: 61 PRAVLMDLEPGTMDSVRSGPYGHIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
PRAVL+DLEPGTMDSVRSGP+G IFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVV
Sbjct: 61 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 121 RKEAENCDCLQG 132
RKEAE+CDCLQG
Sbjct: 121 RKEAESCDCLQG 132
>Os03g0661300 Beta-tubulin (Beta-3 tubulin) (Tubulin beta subunit)
Length = 446
Score = 247 bits (631), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 115/132 (87%), Positives = 121/132 (91%)
Query: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDATGRYDGDSDLQLERVNVYYNEASCGRFV 60
MREILHIQGGQCGNQIGAKFWEV+C EHG+D TG Y G S QLER+NVY+NEAS GR V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGVDPTGTYTGTSPQQLERINVYFNEASGGRHV 60
Query: 61 PRAVLMDLEPGTMDSVRSGPYGHIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
PRAVLMDLEPGTMDS+RSGP G IFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPIGGIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 121 RKEAENCDCLQG 132
RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132
>AK110204
Length = 447
Score = 231 bits (588), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 100/132 (75%), Positives = 120/132 (90%)
Query: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDATGRYDGDSDLQLERVNVYYNEASCGRFV 60
MREI+H+Q GQCGNQ+GA FW+ + EHG+D++G Y+G SDLQLER+NVY+NEAS ++V
Sbjct: 1 MREIVHLQTGQCGNQVGAAFWQTISGEHGLDSSGVYNGTSDLQLERMNVYFNEASGNKYV 60
Query: 61 PRAVLMDLEPGTMDSVRSGPYGHIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
PRAVL+DLEPGTMD+VR+GP+G +FRPDNFVFGQSGAGNNWAKGHYTEGAEL+D VLDVV
Sbjct: 61 PRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVV 120
Query: 121 RKEAENCDCLQG 132
R+EAE CDCLQG
Sbjct: 121 RREAEGCDCLQG 132
>AK110638
Length = 465
Score = 165 bits (417), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 76/134 (56%), Positives = 102/134 (76%), Gaps = 2/134 (1%)
Query: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDATGRYDG-DSDLQLERVNVYYNEA-SCGR 58
MRE++ GQ GNQI + FW+ + EHG+D GRY G + D QL +V V++ + G+
Sbjct: 1 MRELITFACGQAGNQISSAFWQCILNEHGLDGDGRYIGSNEDEQLAKVGVFFEPSGQEGK 60
Query: 59 FVPRAVLMDLEPGTMDSVRSGPYGHIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 118
+VPR++ +DLEPGTMD++RSGP G +FRPDN++ G+SGAGNN++KG+YTEGAEL+D VLD
Sbjct: 61 YVPRSIQVDLEPGTMDTIRSGPLGKLFRPDNYINGESGAGNNFSKGYYTEGAELLDQVLD 120
Query: 119 VVRKEAENCDCLQG 132
V RKEAE D LQG
Sbjct: 121 VARKEAEKTDMLQG 134
>AK106047
Length = 451
Score = 130 bits (328), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 83/134 (61%), Gaps = 2/134 (1%)
Query: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDATGRYDGDSDLQLE--RVNVYYNEASCGR 58
MRE+L I GQ G Q+G WE+ C EHGI G D + +E N +++E G+
Sbjct: 1 MREVLSIHIGQAGVQVGNACWELFCLEHGIQPDGAMPSDKTIGVEDDAFNTFFSETGAGK 60
Query: 59 FVPRAVLMDLEPGTMDSVRSGPYGHIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 118
VPRAV +DLEP +D VR+G Y +F P+ + G+ A NN+A+GHYT G E++D LD
Sbjct: 61 HVPRAVFLDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIVDLCLD 120
Query: 119 VVRKEAENCDCLQG 132
+RK A+NC LQG
Sbjct: 121 RIRKLADNCTGLQG 134
>Os07g0574800 Tubulin alpha-1 chain
Length = 450
Score = 129 bits (325), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 85/134 (63%), Gaps = 2/134 (1%)
Query: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDATGRYDGDSDLQL--ERVNVYYNEASCGR 58
MREI+ I GQ G Q+G WE+ C EHGI+ G D+ + + + N +++E G+
Sbjct: 1 MREIISIHIGQAGIQVGNACWELYCLEHGIEPDGTMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 59 FVPRAVLMDLEPGTMDSVRSGPYGHIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 118
VPRA+ +DLEP +D VR+G Y +F P+ + G+ A NN+A+GHYT G E++D LD
Sbjct: 61 HVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
Query: 119 VVRKEAENCDCLQG 132
VRK A+NC LQG
Sbjct: 121 RVRKLADNCTGLQG 134
>Os03g0219300 Similar to Tubulin alpha-2 chain (Alpha-2 tubulin)
Length = 449
Score = 128 bits (322), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 84/134 (62%), Gaps = 2/134 (1%)
Query: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDATGRYDGDSDLQLER--VNVYYNEASCGR 58
MREI+ I GQ G Q+G WE+ C EHGI G D+ + R N +++E S G+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGLMPSDTTPGIARDAFNTFFSETSSGK 60
Query: 59 FVPRAVLMDLEPGTMDSVRSGPYGHIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 118
VPRA+ +DLEP +D V++GPY +F P+ + + A NN+A+GHYT G E++D LD
Sbjct: 61 HVPRALFVDLEPTVIDEVKTGPYRQLFHPEQLISYKEDAANNFARGHYTVGREVVDLCLD 120
Query: 119 VVRKEAENCDCLQG 132
+RK A+NC LQG
Sbjct: 121 RLRKLADNCTGLQG 134
>Os11g0247300 Alfa-tubulin
Length = 451
Score = 125 bits (314), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 83/134 (61%), Gaps = 2/134 (1%)
Query: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDATGRYDGDSDLQ--LERVNVYYNEASCGR 58
MRE + I GQ G Q+G WE+ C EHGI G+ GD + + N +++E G+
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 59 FVPRAVLMDLEPGTMDSVRSGPYGHIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 118
VPRAV +DLEP +D VR+G Y +F P+ + G+ A NN+A+GHYT G E++D LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGDYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 119 VVRKEAENCDCLQG 132
+RK A+NC LQG
Sbjct: 121 RIRKLADNCTGLQG 134
>Os03g0726100 Similar to Tubulin alpha-1 chain (Alpha-1 tubulin)
Length = 451
Score = 124 bits (310), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 83/134 (61%), Gaps = 2/134 (1%)
Query: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDATGRYDGDSDLQ--LERVNVYYNEASCGR 58
MRE + I GQ G Q+G WE+ C EHGI A G+ D + + N +++E G+
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQADGQMPSDRTVGGGDDAFNTFFSETGAGK 60
Query: 59 FVPRAVLMDLEPGTMDSVRSGPYGHIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 118
VPRAV +DLEP +D VR+G Y +F P+ + G+ A NN+A+GHYT G E++D LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGCYRQLFHPEQLINGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 119 VVRKEAENCDCLQG 132
+RK A+NC LQG
Sbjct: 121 RIRKLADNCTGLQG 134
>AK067478
Length = 453
Score = 122 bits (307), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 81/134 (60%), Gaps = 2/134 (1%)
Query: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDATGRYDGDSDL--QLERVNVYYNEASCGR 58
MRE + I GQ G Q+G WE+ C EH I G D+ L + N +++E GR
Sbjct: 1 MRECISIHVGQAGVQMGNSCWELYCLEHNITPDGTMPSDTTLGSSDDSFNTFFSETGAGR 60
Query: 59 FVPRAVLMDLEPGTMDSVRSGPYGHIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 118
VPRAV +DLEP +D VR+G Y +F P+ + G+ A NN+A+GHYT G E++D VLD
Sbjct: 61 HVPRAVYVDLEPTVVDEVRTGVYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 120
Query: 119 VVRKEAENCDCLQG 132
+R+ ++ C LQG
Sbjct: 121 RIRRLSDQCTGLQG 134
>AK105538
Length = 449
Score = 119 bits (299), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 79/132 (59%)
Query: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDATGRYDGDSDLQLERVNVYYNEASCGRFV 60
MRE++ I GQ G Q+G W++ C EHGI G D E +++E G++V
Sbjct: 1 MREVISIHVGQAGVQMGQSCWQLYCLEHGIQPDGTMPSDKQPGDESFTTFFSETGTGQYV 60
Query: 61 PRAVLMDLEPGTMDSVRSGPYGHIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
PR+V++DLEP +D +R+G Y +F P + G+ A NN+A+GHYT G E +D V+D +
Sbjct: 61 PRSVMVDLEPTVVDEIRTGTYRQLFHPAGLISGKEDAANNYARGHYTVGKENVDTVVDRL 120
Query: 121 RKEAENCDCLQG 132
K AEN LQG
Sbjct: 121 GKIAENSSGLQG 132
>Os05g0156600 Similar to Tubulin gamma-1 chain (Gamma-1 tubulin)
Length = 469
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 87/133 (65%), Gaps = 3/133 (2%)
Query: 2 REILHIQGGQCGNQIGAKFWEVVCAEHGIDATGRYDGDSDLQLERVNVYYNEASCGRFVP 61
REI+ IQ GQCGNQIG +FW+ +C EHGI G + + +R +V++ +A ++P
Sbjct: 3 REIITIQVGQCGNQIGMEFWKQLCLEHGIGKDGLLEDFATQGGDRKDVFFYQADDQHYIP 62
Query: 62 RAVLMDLEPGTMDSVRSGPYGHIFRPDNFVFGQS--GAGNNWAKGHYTEGAELIDAVLDV 119
RA+L+DLEP ++ +++ Y +++ +N + GAGNNWA G Y +G +++D ++D+
Sbjct: 63 RALLVDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASG-YHQGEQVVDDIMDM 121
Query: 120 VRKEAENCDCLQG 132
+ +EA+ D L+G
Sbjct: 122 IDREADGSDSLEG 134
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.140 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,257,847
Number of extensions: 215666
Number of successful extensions: 404
Number of sequences better than 1.0e-10: 19
Number of HSP's gapped: 395
Number of HSP's successfully gapped: 19
Length of query: 133
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 43
Effective length of database: 12,336,541
Effective search space: 530471263
Effective search space used: 530471263
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 150 (62.4 bits)