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Os11g0247300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Alfa-tubulin.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.4 (0.0263) R2 : 0.0325
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.216 (0.0553) R2dN8 : 0.0419 R2N8 : 0.0325
σ : 0.495
deviance : 112.44
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
69.22 0.391 13.4 -0.383 0.477 0.575 -0.00548 3.99 0.152 18.9 43.56 3638 -- --
82.14 0.422 13.4 -0.582 0.461 0.605 0.445 -- 0.087 18.9 40 2677 -- --
68.82 0.386 13.4 -0.366 0.466 0.701 -- 4.5 0.153 18.8 45.61 3690 -- --
82.26 0.422 13.4 -0.628 0.46 0.603 -- -- 0.0955 18.8 40 2680 -- --
80.43 0.418 13.4 -0.418 -- 0.776 -- 4.31 0.138 -- 46.18 3690 -- --
89.41 0.443 13.4 -0.601 0.491 -- 0.274 -- 0.156 19.4 -- -- -- --
89.61 0.443 13.4 -0.607 0.492 -- -- -- 0.156 19.3 -- -- -- --
91 0.444 13.4 -0.601 -- 0.632 -- -- 0.091 -- 40 2144 -- --
92.83 0.449 13.4 -- 0.478 0.56 -- -- 0.143 18.7 40.1 2682 -- --
102.47 0.473 13.4 -0.615 -- -- -- -- 0.148 -- -- -- -- --
99.31 0.466 13.4 -- 0.498 -- -- -- 0.224 19.3 -- -- -- --
101.75 0.47 13.4 -- -- 0.624 -- -- 0.131 -- 40 2145 -- --
112.44 0.495 13.4 -- -- -- -- -- 0.216 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 65.71 radiation 40 4320 < th dose independent rect. 15 18
2 65.78 radiation 10 4320 < th dose independent rect. 17 1
4 65.94 radiation 30 14400 > th dose independent rect. 16 16
5 66.02 radiation 30 14400 > th dose independent rect. 7 1
20 66.07 wind 7 43200 > th dose independent rect. 10 1
21 66.18 radiation 10 4320 < th dose independent rect. 17 10
25 66.23 radiation 20 4320 < th dose independent rect. 16 16
26 66.32 radiation 10 4320 < th dose independent rect. 17 4
31 66.37 wind 5 43200 > th dose dependent rect. 10 1
33 66.40 wind 7 43200 < th dose independent rect. 10 1
34 66.45 wind 7 43200 < th dose independent rect. 8 3
35 66.46 wind 7 43200 > th dose independent rect. 8 3
41 66.63 radiation 40 14400 > th dose dependent rect. 7 2
63 66.79 wind 5 43200 > th dose dependent rect. 6 7
66 66.82 radiation 10 4320 > th dose dependent rect. 16 16
67 66.83 radiation 40 4320 < th dose independent rect. 7 2
70 66.86 radiation 40 4320 < th dose independent rect. 24 9
75 66.89 wind 5 43200 > th dose dependent rect. 8 4
76 66.90 radiation 40 4320 < th dose independent rect. 19 14
78 66.90 radiation 40 14400 < th dose dependent rect. 18 9
90 66.97 radiation 1 4320 > th dose dependent rect. 17 2
135 67.08 wind 3 43200 < th dose independent rect. 3 1
140 67.08 radiation 10 14400 < th dose dependent rect. 18 11
147 67.10 radiation 30 14400 < th dose independent rect. 16 10
150 67.11 wind 7 43200 < th dose independent rect. 2 11
153 67.12 wind 3 43200 > th dose independent rect. 3 1
182 67.20 wind 5 43200 < th dose dependent rect. 3 1
183 67.21 wind 7 43200 > th dose independent rect. 2 11
214 67.29 radiation 40 4320 > th dose dependent rect. 13 20
216 67.30 wind 1 43200 > th dose dependent rect. 10 1
235 67.32 wind 1 43200 > th dose dependent rect. 3 1
239 67.34 wind 7 43200 > th dose independent rect. 23 14
246 67.37 radiation 30 14400 < th dose independent rect. 16 5
252 67.40 radiation 30 14400 < th dose independent rect. 16 2
271 67.44 radiation 10 14400 < th dose dependent rect. 18 5
273 67.45 radiation 10 14400 < th dose dependent rect. 18 3
344 67.62 wind 9 43200 < th dose dependent rect. 3 10
369 67.68 wind 3 43200 > th dose dependent sin 5 NA
377 67.69 radiation 40 4320 > th dose dependent rect. 13 2
394 67.72 wind 9 43200 < th dose dependent rect. 10 1
425 67.77 radiation 20 4320 < th dose dependent rect. 17 13
452 67.83 wind 9 43200 < th dose dependent rect. 8 3
473 67.84 wind 9 43200 < th dose dependent rect. 7 5
599 68.10 radiation 40 4320 < th dose dependent rect. 16 16
675 68.24 wind 5 43200 < th dose independent sin 5 NA
687 68.27 radiation 40 4320 < th dose independent sin 12 NA
704 68.31 wind 5 43200 > th dose independent sin 5 NA
789 68.44 wind 7 43200 > th dose independent sin 7 NA
802 68.47 humidity 90 43200 > th dose independent rect. 8 1
804 68.47 humidity 90 43200 > th dose dependent rect. 8 5
807 68.48 humidity 90 43200 < th dose independent rect. 8 1
846 68.54 humidity 90 43200 > th dose dependent rect. 9 3
848 68.54 wind 9 43200 < th dose dependent rect. 24 5
889 68.62 humidity 90 43200 > th dose dependent rect. 9 1
896 68.63 humidity 90 43200 > th dose independent rect. 8 6
911 68.66 wind 1 43200 > th dose dependent rect. 24 5
914 68.67 wind 3 43200 > th dose dependent rect. 5 1
974 68.75 radiation 10 4320 > th dose dependent rect. 6 2