Os03g0219300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Tubulin alpha-2 chain (Alpha-2 tubulin).
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Os03g0219300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Tubulin alpha-2 chain (Alpha-2 tubulin).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.14 | 0.282 | 13.3 | -0.302 | 0.332 | 0.745 | 0.255 | -1.62 | -0.00981 | 8.04 | 23.01 | 5693 | -- | -- |
| 36.92 | 0.283 | 13.2 | -0.0672 | 0.331 | 0.949 | 0.209 | -- | -0.0372 | 8.02 | 11.5 | 7188 | -- | -- |
| 36.33 | 0.281 | 13.3 | -0.299 | 0.332 | 0.745 | -- | -1.63 | -0.0123 | 7.98 | 23 | 5706 | -- | -- |
| 36.97 | 0.283 | 13.2 | -0.00833 | 0.331 | 0.931 | -- | -- | 0.00191 | 8 | 10.95 | 7166 | -- | -- |
| 42.31 | 0.303 | 13.3 | -0.299 | -- | 0.746 | -- | -1.61 | -0.00981 | -- | 22.94 | 5739 | -- | -- |
| 51.58 | 0.337 | 13.2 | 0.46 | 0.338 | -- | 0.229 | -- | 0.249 | 7.61 | -- | -- | -- | -- |
| 51.73 | 0.337 | 13.2 | 0.465 | 0.338 | -- | -- | -- | 0.248 | 7.58 | -- | -- | -- | -- |
| 42.91 | 0.305 | 13.2 | -0.00693 | -- | 0.933 | -- | -- | 0.00416 | -- | 10.73 | 7185 | -- | -- |
| 36.97 | 0.283 | 13.2 | -- | 0.33 | 0.925 | -- | -- | 0.004 | 8 | 10.87 | 7166 | -- | -- |
| 57.87 | 0.355 | 13.2 | 0.47 | -- | -- | -- | -- | 0.253 | -- | -- | -- | -- | -- |
| 57.43 | 0.354 | 13.2 | -- | 0.342 | -- | -- | -- | 0.196 | 7.49 | -- | -- | -- | -- |
| 42.91 | 0.305 | 13.2 | -- | -- | 0.929 | -- | -- | 0.0063 | -- | 10.14 | 7181 | -- | -- |
| 63.7 | 0.373 | 13.2 | -- | -- | -- | -- | -- | 0.201 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.26 | temperature | 20 | 270 | > th | dose dependent | rect. | 2 | 7 |
| 3 | 36.62 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 15 |
| 5 | 36.64 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 3 |
| 7 | 36.70 | temperature | 10 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 11 | 36.75 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 11 |
| 13 | 36.75 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 15 | 36.75 | temperature | 30 | 4320 | < th | dose dependent | rect. | 7 | 2 |
| 17 | 36.78 | temperature | 25 | 4320 | > th | dose independent | rect. | 3 | 11 |
| 18 | 36.78 | temperature | 25 | 4320 | > th | dose independent | rect. | 2 | 13 |
| 47 | 36.88 | temperature | 20 | 4320 | > th | dose dependent | rect. | 4 | 7 |
| 62 | 36.91 | temperature | 25 | 4320 | > th | dose independent | sin | 4 | NA |
| 66 | 36.92 | temperature | 25 | 4320 | < th | dose independent | sin | 4 | NA |
| 91 | 36.97 | temperature | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 137 | 37.06 | temperature | 20 | 4320 | > th | dose dependent | sin | 3 | NA |
| 177 | 37.11 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 16 |
| 259 | 37.21 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 272 | 37.23 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 348 | 37.29 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 421 | 37.36 | temperature | 25 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 422 | 37.36 | temperature | 25 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 433 | 37.37 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 455 | 37.38 | temperature | 25 | 14400 | < th | dose independent | rect. | 14 | 6 |
| 469 | 37.38 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 509 | 37.41 | temperature | 10 | 4320 | > th | dose dependent | rect. | 4 | 14 |
| 545 | 37.43 | temperature | 10 | 4320 | > th | dose dependent | rect. | 6 | 13 |
| 560 | 37.44 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 585 | 37.45 | temperature | 10 | 4320 | > th | dose dependent | sin | 2 | NA |
| 610 | 37.46 | temperature | 25 | 14400 | > th | dose independent | rect. | 15 | 4 |
| 611 | 37.46 | temperature | 25 | 14400 | > th | dose independent | rect. | 14 | 6 |
| 670 | 37.48 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 18 |
| 682 | 37.49 | temperature | 20 | 4320 | > th | dose dependent | no | NA | NA |
| 736 | 37.50 | temperature | 20 | 4320 | > th | dose dependent | rect. | 6 | 23 |
| 760 | 37.51 | temperature | 20 | 4320 | > th | dose dependent | rect. | 14 | 23 |
| 785 | 37.52 | temperature | 20 | 4320 | > th | dose dependent | rect. | 11 | 23 |
| 875 | 37.57 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 2 |