Os06g0671900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Beta-tubulin.
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Os06g0671900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Beta-tubulin.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.57 | 0.251 | 13.1 | -0.0287 | 0.356 | 0.95 | -0.147 | -0.612 | 0.0978 | 13.6 | 18.8 | 843 | -- | -- |
| 28.96 | 0.251 | 13.1 | 0.057 | 0.352 | 0.956 | -0.0694 | -- | 0.118 | 13.5 | 18 | 844 | -- | -- |
| 28.56 | 0.249 | 13.1 | -0.0596 | 0.406 | 0.938 | -- | -0.531 | 0.0912 | 14.4 | 18.7 | 986 | -- | -- |
| 28.68 | 0.249 | 13.1 | 0.0974 | 0.408 | 0.863 | -- | -- | 0.131 | 15 | 18.6 | 1084 | -- | -- |
| 30.74 | 0.258 | 13.1 | 0.0128 | -- | 1.04 | -- | -0.604 | 0.102 | -- | 17.17 | 368 | -- | -- |
| 45.84 | 0.317 | 13 | 0.384 | 0.316 | -- | -0.17 | -- | 0.311 | 16.3 | -- | -- | -- | -- |
| 45.92 | 0.317 | 13 | 0.382 | 0.315 | -- | -- | -- | 0.31 | 16.3 | -- | -- | -- | -- |
| 31.23 | 0.26 | 13.1 | 0.133 | -- | 1.02 | -- | -- | 0.138 | -- | 17.11 | 362 | -- | -- |
| 28.89 | 0.25 | 13.1 | -- | 0.414 | 0.906 | -- | -- | 0.116 | 14.9 | 18.41 | 1084 | -- | -- |
| 51.27 | 0.335 | 13 | 0.37 | -- | -- | -- | -- | 0.301 | -- | -- | -- | -- | -- |
| 49.77 | 0.33 | 13 | -- | 0.308 | -- | -- | -- | 0.267 | 16.4 | -- | -- | -- | -- |
| 31.66 | 0.262 | 13.1 | -- | -- | 1.03 | -- | -- | 0.12 | -- | 17.61 | 401 | -- | -- |
| 54.87 | 0.346 | 13 | -- | -- | -- | -- | -- | 0.26 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.46 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 17 |
| 2 | 27.46 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 20 |
| 59 | 28.42 | temperature | 15 | 720 | > th | dose dependent | sin | 14 | NA |
| 70 | 28.50 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 85 | 28.63 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 19 |
| 86 | 28.65 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 14 |
| 92 | 28.68 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 17 |
| 124 | 28.80 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 133 | 28.85 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 137 | 28.85 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 9 |
| 141 | 28.86 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 155 | 28.89 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 186 | 28.94 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 230 | 29.02 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 16 |
| 253 | 29.05 | temperature | 20 | 1440 | > th | dose dependent | sin | 9 | NA |
| 254 | 29.05 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 269 | 29.06 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 270 | 29.06 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 23 |
| 303 | 29.10 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 357 | 29.13 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 398 | 29.17 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 11 |
| 407 | 29.18 | temperature | 30 | 720 | < th | dose dependent | sin | 14 | NA |
| 415 | 29.18 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 9 |
| 432 | 29.19 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 6 |
| 443 | 29.19 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 490 | 29.22 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 500 | 29.22 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 544 | 29.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 550 | 29.25 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 13 |
| 553 | 29.25 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 586 | 29.26 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 10 |
| 732 | 29.33 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 737 | 29.33 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 5 |
| 758 | 29.33 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 907 | 29.39 | temperature | 30 | 1440 | < th | dose dependent | sin | 11 | NA |
| 939 | 29.40 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |