Os03g0105600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Tubulin beta-2 chain (Beta-2 tubulin).
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Os03g0105600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Tubulin beta-2 chain (Beta-2 tubulin).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 169.39 | 0.611 | 9.92 | 0.896 | 0.749 | 1.12 | 0.935 | 2.13 | 0.198 | 19.9 | 13.42 | 95 | -- | -- |
| 175.84 | 0.618 | 9.91 | 0.927 | 0.739 | 0.884 | 0.55 | -- | 0.213 | 19.3 | 11.5 | 91 | -- | -- |
| 171.54 | 0.61 | 9.91 | 0.888 | 0.722 | 1.1 | -- | 2.01 | 0.201 | 19.7 | 15.3 | 105 | -- | -- |
| 176.33 | 0.618 | 9.91 | 0.924 | 0.715 | 0.958 | -- | -- | 0.216 | 19.6 | 11.67 | 127 | -- | -- |
| 187.12 | 0.637 | 9.9 | 0.904 | -- | 0.904 | -- | 1.4 | 0.175 | -- | -0.6268 | 617 | -- | -- |
| 187.72 | 0.642 | 9.9 | 0.918 | 0.768 | -- | 0.943 | -- | 0.249 | 17.4 | -- | -- | -- | -- |
| 189.91 | 0.645 | 9.9 | 0.916 | 0.775 | -- | -- | -- | 0.253 | 17.5 | -- | -- | -- | -- |
| 189.65 | 0.641 | 9.91 | 0.847 | -- | 0.937 | -- | -- | 0.148 | -- | -23.03 | 679 | -- | -- |
| 197.79 | 0.655 | 9.94 | -- | 0.709 | 0.948 | -- | -- | 0.107 | 19.9 | 9.174 | 127 | -- | -- |
| 221.16 | 0.695 | 9.89 | 0.89 | -- | -- | -- | -- | 0.234 | -- | -- | -- | -- | -- |
| 212.02 | 0.681 | 9.92 | -- | 0.76 | -- | -- | -- | 0.151 | 17.5 | -- | -- | -- | -- |
| 208.55 | 0.673 | 9.93 | -- | -- | 0.965 | -- | -- | 0.0519 | -- | -65.9 | 679 | -- | -- |
| 242.06 | 0.726 | 9.91 | -- | -- | -- | -- | -- | 0.135 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 163.94 | humidity | 90 | 10 | < th | dose independent | rect. | 2 | 7 |
| 3 | 164.51 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 24 | 7 |
| 4 | 164.88 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 11 | 166.40 | radiation | 40 | 10 | < th | dose independent | rect. | 6 | 14 |
| 13 | 166.66 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 3 | 6 |
| 25 | 167.72 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 34 | 168.53 | humidity | 90 | 720 | > th | dose dependent | rect. | 9 | 18 |
| 35 | 168.58 | radiation | 1 | 90 | > th | dose dependent | rect. | 8 | 9 |
| 36 | 168.60 | radiation | 1 | 90 | > th | dose dependent | rect. | 8 | 22 |
| 71 | 169.16 | humidity | 90 | 720 | > th | dose dependent | rect. | 22 | 4 |
| 94 | 169.42 | radiation | 10 | 90 | > th | dose dependent | sin | 2 | NA |
| 96 | 169.47 | humidity | 90 | 4320 | > th | dose dependent | rect. | 1 | 2 |
| 98 | 169.50 | radiation | 40 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 99 | 169.50 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 101 | 169.54 | radiation | 40 | 10 | < th | dose independent | rect. | 23 | 23 |
| 103 | 169.61 | radiation | 40 | 10 | < th | dose independent | rect. | 21 | 23 |
| 118 | 169.64 | radiation | 10 | 90 | > th | dose dependent | no | NA | NA |
| 226 | 169.76 | radiation | 40 | 10 | > th | dose independent | rect. | 13 | 23 |
| 363 | 169.93 | radiation | 10 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 387 | 169.96 | radiation | 40 | 90 | < th | dose dependent | rect. | 6 | 13 |
| 393 | 170.01 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 420 | 170.22 | wind | 1 | 4320 | > th | dose independent | rect. | 17 | 7 |
| 424 | 170.25 | radiation | 20 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 425 | 170.29 | radiation | 10 | 270 | > th | dose dependent | sin | 7 | NA |
| 492 | 170.63 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 14 |
| 493 | 170.64 | wind | 1 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 602 | 170.78 | radiation | 40 | 10 | < th | dose independent | rect. | 13 | 23 |
| 619 | 170.82 | humidity | 90 | 720 | > th | dose dependent | sin | 16 | NA |
| 622 | 170.82 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 633 | 170.84 | radiation | 40 | 90 | < th | dose dependent | sin | 1 | NA |
| 640 | 170.93 | radiation | 20 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 651 | 171.07 | radiation | 40 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 687 | 171.16 | radiation | 40 | 270 | < th | dose dependent | sin | 5 | NA |
| 692 | 171.19 | humidity | 90 | 270 | < th | dose independent | rect. | 1 | 6 |
| 695 | 171.21 | radiation | 40 | 270 | < th | dose independent | rect. | 9 | 23 |
| 699 | 171.23 | radiation | 40 | 90 | < th | dose independent | rect. | 21 | 23 |
| 721 | 171.27 | radiation | 40 | 90 | < th | dose independent | sin | 5 | NA |
| 733 | 171.28 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 737 | 171.28 | radiation | 40 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 739 | 171.30 | radiation | 20 | 270 | > th | dose independent | sin | 7 | NA |
| 757 | 171.33 | radiation | 40 | 10 | > th | dose independent | no | NA | NA |
| 758 | 171.33 | radiation | 40 | 10 | > th | dose independent | rect. | 9 | 6 |
| 940 | 171.41 | radiation | 40 | 10 | > th | dose independent | sin | 3 | NA |
| 945 | 171.44 | humidity | 90 | 720 | > th | dose independent | rect. | 22 | 4 |
| 958 | 171.50 | radiation | 40 | 10 | < th | dose independent | rect. | 15 | 23 |
| 965 | 171.54 | radiation | 40 | 10 | < th | dose independent | no | NA | NA |
| 970 | 171.57 | radiation | 20 | 270 | < th | dose independent | sin | 6 | NA |
| 974 | 171.58 | atmosphere | 1005 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 977 | 171.59 | radiation | 40 | 90 | > th | dose independent | sin | 5 | NA |
| 978 | 171.59 | wind | 1 | 30 | > th | dose independent | rect. | 4 | 5 |
| 981 | 171.60 | radiation | 40 | 10 | > th | dose independent | rect. | 11 | 23 |
| 985 | 171.61 | radiation | 40 | 270 | > th | dose independent | rect. | 9 | 1 |
| 990 | 171.64 | wind | 1 | 4320 | > th | dose dependent | rect. | 23 | 11 |