Os05g0156600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Tubulin gamma-1 chain (Gamma-1 tubulin).
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Os05g0156600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Tubulin gamma-1 chain (Gamma-1 tubulin).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.37 | 0.19 | 10 | 0.501 | 0.679 | -0.538 | -0.117 | -0.417 | 0.189 | 18.2 | 26 | 126 | -- | -- |
| 16.61 | 0.19 | 10 | 0.437 | 0.674 | -0.512 | -0.111 | -- | 0.169 | 18.3 | 26.57 | 133 | -- | -- |
| 16.4 | 0.189 | 10 | 0.498 | 0.677 | -0.537 | -- | -0.394 | 0.186 | 18.3 | 26.1 | 126 | -- | -- |
| 16.61 | 0.19 | 10 | 0.433 | 0.671 | -0.513 | -- | -- | 0.172 | 18.3 | 26.6 | 125 | -- | -- |
| 33.25 | 0.269 | 10 | 0.334 | -- | -1.06 | -- | -0.0873 | 0.124 | -- | 88.35 | 313 | -- | -- |
| 20.33 | 0.211 | 10 | 0.562 | 0.759 | -- | -0.0273 | -- | 0.284 | 17.8 | -- | -- | -- | -- |
| 20.33 | 0.211 | 10 | 0.563 | 0.759 | -- | -- | -- | 0.284 | 17.8 | -- | -- | -- | -- |
| 33.25 | 0.269 | 10 | 0.32 | -- | -1.06 | -- | -- | 0.121 | -- | 92.8 | 314 | -- | -- |
| 21.22 | 0.215 | 10.1 | -- | 0.654 | -0.623 | -- | -- | 0.115 | 18.2 | 26.03 | 182 | -- | -- |
| 50.18 | 0.331 | 10 | 0.539 | -- | -- | -- | -- | 0.266 | -- | -- | -- | -- | -- |
| 28.67 | 0.25 | 10 | -- | 0.75 | -- | -- | -- | 0.221 | 17.8 | -- | -- | -- | -- |
| 35.77 | 0.279 | 10.1 | -- | -- | -1.17 | -- | -- | 0.0725 | -- | 39.02 | 321 | -- | -- |
| 57.85 | 0.355 | 10 | -- | -- | -- | -- | -- | 0.206 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.58 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 2 | 15.60 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 6 | 15.98 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 8 | 16.01 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 16 | 16 |
| 40 | 16.40 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 45 | 16.42 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 46 | 16.42 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 11 | 21 |
| 61 | 16.48 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 62 | 16.48 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 63 | 16.48 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 84 | 16.59 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 4 |
| 93 | 16.63 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 15 | 22 |
| 94 | 16.63 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 102 | 16.65 | temperature | 25.0 | 90 | < th | dose dependent | no | NA | NA |
| 105 | 16.65 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 112 | 16.68 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 129 | 16.71 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 133 | 16.72 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 137 | 16.72 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 16 | 20 |
| 140 | 16.73 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 146 | 16.74 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 150 | 16.76 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 161 | 16.78 | wind | 7.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 193 | 16.83 | wind | 7.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 201 | 16.83 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 263 | 16.88 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 265 | 16.88 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 279 | 16.89 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 318 | 16.94 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 330 | 16.95 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 366 | 16.98 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 6 |
| 367 | 16.98 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 22 |
| 397 | 17.00 | temperature | 25.0 | 10 | < th | dose dependent | sin | 22 | NA |
| 426 | 17.03 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 3 |
| 443 | 17.04 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 9 | 4 |
| 445 | 17.04 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 446 | 17.04 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 9 |
| 472 | 17.06 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 473 | 17.06 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 495 | 17.06 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 527 | 17.07 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 8 | 8 |
| 547 | 17.08 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 651 | 17.11 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 679 | 17.12 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 702 | 17.12 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 797 | 17.16 | temperature | 25.0 | 90 | < th | dose independent | rect. | 5 | 18 |
| 829 | 17.18 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 4 | 9 |
| 849 | 17.19 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 8 | 5 |
| 883 | 17.21 | humidity | 70.0 | 43200 | < th | dose dependent | sin | 7 | NA |
| 901 | 17.22 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 13 |
| 914 | 17.23 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 22 |
| 935 | 17.24 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 13 |
| 944 | 17.25 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 982 | 17.26 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 9 | 13 |
| 999 | 17.27 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |