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Os01g0282800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Tubulin beta-5 chain (Beta-5 tubulin).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.27 (0.0702) R2 : 0.555
β1 : -5.75 (0.264) R2dD : 0.507 R2D : 0.339
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.62 (0.184) R2dE : 0.209 R2E : 0.0588
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.273 (0.15) R2dN8 : 0.00434 R2N8 : -0.0105
σ : 1.31
deviance : 795.29
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 29.56
memory length : 1300
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
783.86 1.32 9.36 -6.88 0.124 -3.13 -2.05 5.02 -0.192 18.9 29.8 1293 -- --
783.78 1.3 9.28 -5.79 0.14 -2.63 -1.93 -- -0.252 19 29.6 1307 -- --
790.51 1.31 9.35 -6.53 0.354 -2.99 -- 3.92 -0.213 15.8 29.8 1275 -- --
787.69 1.31 9.27 -5.75 0.328 -2.67 -- -- -0.283 14.2 29.6 1285 -- --
790.09 1.31 9.4 -6.99 -- -3.19 -- 5.21 -0.481 -- 29.58 1294 -- --
1135.15 1.58 9.26 -4.92 0.0765 -- -2.31 -- -0.245 18.6 -- -- -- --
1147.98 1.59 9.27 -4.89 0.11 -- -- -- -0.254 22.2 -- -- -- --
795.29 1.31 9.27 -5.75 -- -2.62 -- -- -0.273 -- 29.56 1300 -- --
1619.52 1.87 9.26 -- 0.374 -1.77 -- -- 0.14 14.7 29.5 1270 -- --
1148.72 1.58 9.26 -4.89 -- -- -- -- -0.253 -- -- -- -- --
1778.49 1.97 9.14 -- 0.129 -- -- -- 0.291 19 -- -- -- --
1621.63 1.88 9.16 -- -- -1.69 -- -- 0.244 -- 29.4 1270 -- --
1779.36 1.97 9.14 -- -- -- -- -- 0.289 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 758.82 humidity 70.0 14400 < th dose independent rect. 18 14
2 760.10 humidity 70.0 14400 < th dose dependent rect. 17 2
5 764.07 humidity 70.0 14400 < th dose dependent rect. 16 16
7 764.78 humidity 70.0 14400 < th dose dependent rect. 16 6
17 765.01 humidity 70.0 14400 < th dose independent rect. 17 5
58 773.86 wind 3.0 43200 > th dose dependent rect. 6 1
59 774.54 wind 3.0 43200 > th dose dependent rect. 24 16
61 775.22 wind 3.0 43200 > th dose dependent rect. 3 12
62 775.86 humidity 70.0 14400 > th dose independent rect. 18 14
68 778.16 wind 3.0 43200 > th dose dependent sin 3 NA
71 778.76 wind 7.0 43200 > th dose independent rect. 19 21
76 780.48 wind 7.0 43200 > th dose independent rect. 15 23
77 780.55 wind 7.0 43200 < th dose independent rect. 19 21
82 781.72 humidity 70.0 14400 > th dose independent rect. 18 9
87 781.87 humidity 70.0 14400 > th dose independent rect. 18 5
90 781.95 wind 7.0 43200 < th dose independent rect. 15 23
124 783.93 precipitation 0.1 43200 > th dose dependent rect. 19 2
128 784.43 humidity 60.0 14400 > th dose independent rect. 17 1
141 785.70 wind 7.0 43200 > th dose independent rect. 24 16
145 785.88 wind 5.0 43200 < th dose independent rect. 3 13
164 786.69 wind 5.0 43200 > th dose independent rect. 3 13
165 786.69 wind 5.0 43200 > th dose dependent rect. 19 21
180 787.67 wind 7.0 43200 > th dose independent sin 3 NA
202 788.72 wind 7.0 43200 < th dose independent sin 3 NA
203 788.73 wind 3.0 43200 < th dose independent rect. 2 3
210 789.37 wind 5.0 43200 > th dose dependent rect. 15 23
213 789.65 wind 7.0 43200 > th dose independent rect. 1 21
221 789.86 wind 3.0 43200 > th dose independent rect. 3 4
223 790.03 wind 7.0 43200 > th dose independent rect. 8 22
239 790.58 wind 7.0 43200 > th dose independent no NA NA
252 790.86 wind 7.0 43200 > th dose independent rect. 3 23
254 790.89 wind 7.0 43200 > th dose dependent rect. 10 20
266 791.17 wind 7.0 43200 < th dose independent rect. 1 21
277 791.40 wind 5.0 43200 < th dose independent rect. 6 1
284 791.57 wind 7.0 43200 < th dose independent rect. 8 22
314 792.09 wind 7.0 43200 < th dose independent no NA NA
322 792.29 wind 7.0 43200 < th dose independent rect. 3 23
346 792.75 humidity 50.0 1440 > th dose dependent rect. 6 16
353 792.83 wind 5.0 43200 > th dose independent rect. 6 1
356 792.84 humidity 80.0 1440 < th dose dependent rect. 16 5
358 792.92 temperature 30.0 1440 < th dose independent sin 16 NA
376 793.31 wind 9.0 43200 < th dose dependent rect. 3 11
383 793.43 temperature 30.0 1440 < th dose independent rect. 11 17
388 793.44 temperature 30.0 1440 < th dose independent rect. 11 20
397 793.55 temperature 30.0 1440 < th dose independent rect. 11 14
400 793.61 temperature 30.0 1440 < th dose independent rect. 11 8
402 793.63 temperature 30.0 1440 < th dose independent rect. 11 12
404 793.65 temperature 30.0 1440 < th dose independent rect. 11 10
436 794.09 wind 5.0 43200 > th dose dependent rect. 24 22
442 794.25 humidity 70.0 1440 < th dose independent sin 14 NA
457 794.47 temperature 30.0 1440 > th dose independent sin 15 NA
459 794.49 wind 3.0 43200 < th dose independent rect. 4 1
510 795.21 wind 3.0 43200 > th dose independent rect. 2 8
532 795.44 wind 7.0 43200 > th dose independent rect. 7 16
559 795.92 temperature 30.0 1440 < th dose independent rect. 15 14
561 795.93 temperature 30.0 1440 < th dose independent rect. 15 16
576 796.09 wind 5.0 43200 > th dose dependent no NA NA
577 796.10 temperature 30.0 1440 > th dose independent rect. 11 8
594 796.16 temperature 30.0 1440 < th dose independent rect. 15 10
600 796.24 temperature 30.0 1440 > th dose independent rect. 15 4
615 796.27 temperature 30.0 1440 < th dose independent rect. 15 8
621 796.31 temperature 30.0 1440 < th dose independent rect. 15 4
623 796.32 temperature 30.0 1440 < th dose independent rect. 15 6
627 796.35 temperature 30.0 1440 < th dose independent rect. 13 23
646 796.52 wind 5.0 43200 > th dose dependent rect. 7 23
647 796.53 temperature 30.0 1440 < th dose independent rect. 17 23
655 796.63 temperature 30.0 1440 < th dose independent rect. 6 22
659 796.65 temperature 30.0 1440 < th dose independent rect. 15 23
660 796.65 temperature 30.0 1440 < th dose independent rect. 20 23
662 796.66 temperature 30.0 1440 < th dose independent rect. 22 21
669 796.68 temperature 30.0 1440 < th dose independent rect. 24 19
675 796.69 temperature 30.0 1440 < th dose independent rect. 2 23
677 796.70 temperature 30.0 1440 < th dose independent no NA NA
682 796.70 temperature 30.0 1440 < th dose independent rect. 24 23
688 796.72 temperature 30.0 1440 < th dose independent rect. 6 19
698 796.74 temperature 30.0 1440 < th dose independent rect. 2 17
701 796.76 temperature 30.0 1440 < th dose independent rect. 2 21
711 796.77 temperature 30.0 1440 < th dose independent rect. 6 13
745 796.81 temperature 30.0 1440 < th dose independent rect. 6 15
858 797.58 wind 7.0 43200 < th dose independent rect. 7 16
895 797.84 humidity 70.0 14400 < th dose dependent sin 12 NA
898 797.87 humidity 70.0 1440 > th dose independent sin 14 NA
920 798.06 wind 3.0 43200 < th dose independent rect. 2 8
955 798.42 humidity 90.0 1440 < th dose dependent rect. 6 16
981 798.57 temperature 30.0 1440 > th dose independent rect. 13 6
997 798.60 humidity 50.0 1440 > th dose dependent sin 20 NA
998 798.60 humidity 80.0 1440 < th dose dependent sin 15 NA