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Os03g0780600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tubulin beta-1 chain (Beta-1 tubulin).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.2 (0.018) R2 : 0.468
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.925 (0.0467) R2dC : 0.46 R2C : 0.457
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.103 (0.0379) R2dN8 : 0.0111 R2N8 : 0.00806
σ : 0.34
deviance : 52.78
__
_____
C
peak time of C : 7.3
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
38.69 0.29 12.2 -0.656 0.981 0.199 -0.553 -0.703 0.0221 7.85 20 10 -- --
40.71 0.297 12.2 -0.624 0.976 0.18 -0.0975 -- 0.029 7.78 21.24 11 -- --
39.17 0.291 12.2 -0.631 0.955 0.191 -- -0.597 0.0374 7.75 21.29 12 -- --
40.66 0.297 12.2 -0.631 0.981 0.189 -- -- 0.0313 7.78 19.46 13 -- --
58.49 0.356 12.3 -0.784 -- 0.753 -- -0.965 -0.131 -- 0.17 768 -- --
42.08 0.304 12.2 -0.628 0.932 -- -0.244 -- 0.0319 7.22 -- -- -- --
42.24 0.304 12.2 -0.633 0.931 -- -- -- 0.0325 7.25 -- -- -- --
47.33 0.32 12.3 -0.664 -- 1.14 -- -- 0.0445 -- 1.55 867 -- --
50.98 0.333 12.2 -- 0.94 0.22 -- -- 0.113 7.7 30.75 31 -- --
88.15 0.439 12.3 -0.616 -- -- -- -- 0.0484 -- -- -- -- --
52.78 0.34 12.2 -- 0.925 -- -- -- 0.103 7.3 -- -- -- --
53.01 0.339 12.3 -- -- 1.34 -- -- 0.136 -- 0.17 891 -- --
98.16 0.462 12.2 -- -- -- -- -- 0.117 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 34.65 temperature 10.0 90 > th dose dependent rect. 17 16
3 34.81 temperature 10.0 10 > th dose dependent rect. 17 17
13 35.41 radiation 1.0 90 > th dose independent rect. 17 16
25 35.71 atmosphere 1005.0 270 > th dose dependent rect. 3 4
34 35.82 temperature 10.0 270 > th dose dependent rect. 3 6
42 35.97 radiation 10.0 90 < th dose dependent sin 11 NA
48 36.04 temperature 25.0 10 > th dose independent rect. 6 3
51 36.05 temperature 15.0 270 > th dose dependent rect. 4 3
55 36.08 radiation 1.0 90 < th dose independent sin 10 NA
64 36.16 humidity 50.0 270 > th dose independent rect. 9 18
70 36.21 temperature 10.0 10 > th dose dependent rect. 10 7
74 36.25 humidity 50.0 270 > th dose independent rect. 7 21
79 36.28 atmosphere 1005.0 10 > th dose dependent rect. 5 4
80 36.28 wind 9.0 270 < th dose dependent rect. 3 6
86 36.31 radiation 1.0 270 > th dose independent rect. 17 14
87 36.32 radiation 1.0 90 > th dose independent sin 10 NA
98 36.35 wind 5.0 270 < th dose independent rect. 3 6
99 36.35 wind 1.0 90 > th dose independent rect. 9 8
103 36.36 radiation 1.0 10 > th dose independent rect. 10 7
106 36.37 wind 1.0 270 > th dose independent rect. 7 8
114 36.39 wind 1.0 10 > th dose independent rect. 10 7
117 36.39 temperature 30.0 10 < th dose dependent rect. 19 11
119 36.41 temperature 20.0 10 > th dose independent rect. 10 7
120 36.41 wind 9.0 270 < th dose independent rect. 9 18
123 36.43 humidity 90.0 30 < th dose independent rect. 6 3
126 36.45 temperature 25.0 30 > th dose independent rect. 17 16
129 36.45 temperature 15.0 10 > th dose dependent rect. 4 6
130 36.46 precipitation 0.1 270 < th dose independent rect. 19 9
132 36.46 temperature 10.0 270 > th dose dependent rect. 8 6
133 36.46 precipitation 0.1 270 < th dose dependent rect. 19 9
136 36.47 radiation 1.0 90 > th dose independent rect. 9 8
140 36.48 temperature 10.0 270 > th dose dependent rect. 9 4
141 36.48 humidity 50.0 270 > th dose dependent rect. 3 6
146 36.49 wind 9.0 10 < th dose independent rect. 10 7
147 36.49 temperature 15.0 10 > th dose independent rect. 17 17
151 36.50 humidity 80.0 270 < th dose independent rect. 10 3
155 36.50 radiation 1.0 90 > th dose dependent rect. 17 14
156 36.51 humidity 50.0 90 > th dose independent rect. 9 8
158 36.51 precipitation 0.1 270 < th dose independent rect. 9 18
162 36.51 precipitation 0.1 270 < th dose dependent rect. 9 18
168 36.53 wind 9.0 90 < th dose independent rect. 9 8
169 36.53 temperature 30.0 270 < th dose independent rect. 18 10
174 36.54 humidity 80.0 270 < th dose independent rect. 9 5
176 36.55 precipitation 0.1 270 < th dose independent rect. 3 6
182 36.55 precipitation 0.1 270 < th dose dependent rect. 3 6
184 36.56 atmosphere 995.0 10 > th dose independent rect. 17 17
204 36.60 humidity 60.0 270 > th dose independent rect. 18 10
213 36.62 radiation 1.0 270 < th dose dependent rect. 18 10
222 36.64 humidity 60.0 270 > th dose independent rect. 3 6
224 36.64 wind 9.0 270 < th dose independent rect. 19 9
225 36.64 temperature 10.0 270 > th dose independent rect. 19 9
228 36.64 atmosphere 995.0 270 > th dose independent rect. 19 9
229 36.64 radiation 1.0 270 < th dose independent rect. 19 9
234 36.64 temperature 10.0 270 > th dose independent rect. 4 15
235 36.64 atmosphere 1015.0 270 < th dose independent rect. 4 15
236 36.64 precipitation 0.1 270 < th dose independent rect. 4 15
242 36.64 precipitation 0.1 270 < th dose dependent rect. 4 15
243 36.65 wind 1.0 270 > th dose independent rect. 9 5
244 36.65 radiation 1.0 270 > th dose independent rect. 9 5
246 36.65 atmosphere 995.0 90 > th dose independent rect. 17 16
248 36.65 radiation 40.0 270 < th dose independent rect. 13 20
249 36.66 temperature 10.0 10 > th dose independent rect. 10 7
251 36.66 atmosphere 1015.0 10 < th dose independent rect. 10 7
252 36.66 precipitation 0.1 10 < th dose independent rect. 10 7
255 36.66 precipitation 0.1 10 < th dose dependent rect. 10 7
259 36.67 temperature 10.0 270 > th dose independent rect. 3 6
262 36.67 atmosphere 995.0 270 > th dose independent rect. 3 6
263 36.67 atmosphere 1015.0 270 < th dose independent rect. 3 6
264 36.67 atmosphere 995.0 10 > th dose independent rect. 10 7
266 36.67 atmosphere 1015.0 10 < th dose independent rect. 17 17
267 36.67 temperature 10.0 270 > th dose independent rect. 9 18
269 36.67 temperature 10.0 270 > th dose dependent rect. 14 9
278 36.70 wind 1.0 270 > th dose independent rect. 9 18
280 36.71 temperature 20.0 270 > th dose independent rect. 9 5
314 36.72 temperature 10.0 90 > th dose independent rect. 9 8
315 36.72 atmosphere 1015.0 90 < th dose independent rect. 9 8
323 36.73 wind 3.0 270 < th dose independent rect. 4 3
337 36.74 precipitation 0.1 10 < th dose independent rect. 17 17
338 36.74 precipitation 0.1 10 < th dose dependent rect. 17 17
340 36.76 humidity 80.0 270 > th dose independent rect. 4 3
350 36.78 radiation 1.0 270 > th dose independent rect. 4 3
363 36.79 radiation 1.0 270 > th dose independent rect. 6 1
365 36.79 radiation 40.0 270 < th dose independent rect. 3 6
366 36.79 precipitation 0.1 90 < th dose independent rect. 9 8
368 36.79 precipitation 0.1 90 < th dose dependent rect. 9 8
398 36.83 radiation 1.0 90 < th dose independent rect. 19 12
410 36.85 temperature 30.0 270 < th dose independent rect. 3 6
428 36.87 wind 9.0 270 < th dose independent rect. 9 5
429 36.87 humidity 80.0 270 > th dose independent rect. 3 6
438 36.88 radiation 40.0 90 < th dose independent rect. 17 16
440 36.88 wind 7.0 270 < th dose dependent rect. 4 3
469 36.91 temperature 20.0 270 > th dose independent rect. 4 3
475 36.91 wind 9.0 10 < th dose independent rect. 17 17
476 36.91 radiation 40.0 270 < th dose independent rect. 15 17
485 36.92 wind 9.0 90 < th dose independent rect. 17 16
491 36.93 humidity 50.0 10 > th dose independent rect. 17 17
531 36.97 precipitation 0.1 270 < th dose independent rect. 9 5
532 36.97 humidity 80.0 270 < th dose independent rect. 23 15
537 36.97 precipitation 0.1 270 < th dose dependent rect. 9 5
549 36.99 temperature 10.0 270 > th dose independent rect. 9 5
550 36.99 atmosphere 995.0 270 > th dose independent rect. 9 5
551 36.99 atmosphere 1015.0 270 < th dose independent rect. 9 5
556 36.99 temperature 10.0 270 > th dose independent rect. 14 19
565 37.00 wind 9.0 270 < th dose independent rect. 7 21
602 37.03 radiation 40.0 270 < th dose independent rect. 3 15
610 37.03 radiation 1.0 90 > th dose dependent rect. 17 16
615 37.04 wind 9.0 270 < th dose independent rect. 15 17
625 37.05 precipitation 0.1 270 < th dose independent rect. 15 17
632 37.05 precipitation 0.1 270 < th dose dependent rect. 15 17
635 37.06 humidity 80.0 10 < th dose independent rect. 10 7
645 37.07 atmosphere 1005.0 270 > th dose independent rect. 4 3
665 37.08 wind 7.0 30 < th dose dependent rect. 6 4
684 37.10 atmosphere 995.0 270 > th dose independent rect. 4 15
690 37.11 wind 9.0 270 < th dose independent rect. 4 15
701 37.12 atmosphere 995.0 270 > th dose independent rect. 14 19
720 37.15 humidity 50.0 270 > th dose independent rect. 9 5
723 37.15 atmosphere 1015.0 270 < th dose independent rect. 14 19
725 37.15 precipitation 0.1 270 < th dose independent rect. 7 21
730 37.15 precipitation 0.1 270 < th dose dependent rect. 7 21
750 37.17 wind 1.0 30 > th dose independent rect. 10 20
754 37.18 precipitation 0.1 270 < th dose independent rect. 4 3
756 37.18 wind 9.0 270 < th dose independent rect. 23 14
759 37.18 precipitation 0.1 270 < th dose independent rect. 14 19
760 37.18 precipitation 0.1 270 < th dose dependent rect. 4 3
766 37.18 precipitation 0.1 270 < th dose dependent rect. 14 19
768 37.19 wind 5.0 10 < th dose independent rect. 6 4
775 37.19 wind 9.0 270 < th dose independent rect. 14 19
786 37.20 radiation 40.0 10 < th dose independent rect. 17 17
791 37.21 temperature 30.0 720 < th dose independent rect. 18 1
819 37.23 radiation 10.0 30 > th dose independent sin 19 NA
833 37.24 radiation 20.0 270 < th dose independent rect. 4 3
841 37.24 temperature 30.0 30 < th dose independent rect. 10 20
845 37.24 atmosphere 1005.0 90 > th dose dependent rect. 24 9
849 37.25 temperature 10.0 270 > th dose independent rect. 4 3
851 37.25 temperature 30.0 270 < th dose independent rect. 4 3
852 37.25 humidity 50.0 270 > th dose independent rect. 4 3
854 37.25 atmosphere 995.0 270 > th dose independent rect. 4 3
855 37.25 atmosphere 1015.0 270 < th dose independent rect. 4 3
861 37.25 temperature 10.0 270 > th dose independent rect. 13 10
862 37.25 temperature 10.0 270 > th dose independent rect. 23 14
863 37.25 atmosphere 995.0 270 > th dose independent rect. 23 14
869 37.25 temperature 10.0 270 > th dose independent rect. 7 21
880 37.26 temperature 25.0 10 > th dose dependent sin 10 NA
894 37.27 radiation 1.0 90 < th dose dependent rect. 19 13
901 37.28 wind 9.0 10 < th dose independent rect. 10 20
912 37.29 humidity 80.0 270 > th dose independent rect. 3 10
913 37.29 wind 9.0 43200 > th dose independent rect. 16 16
959 37.32 atmosphere 1015.0 270 < th dose independent rect. 13 10
967 37.33 atmosphere 1005.0 10 > th dose independent rect. 6 4
986 37.33 radiation 20.0 10 < th dose independent rect. 6 17