Os05g0413200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Beta-tubulin.
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Os05g0413200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Beta-tubulin.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 420.4 | 0.963 | 12.4 | -1.32 | 1.23 | -1.83 | 0.378 | -4.33 | -0.146 | 8.43 | 84.88 | 40 | -- | -- |
| 449.49 | 0.987 | 12.4 | -1.13 | 1.14 | -2.49 | -0.608 | -- | -0.251 | 9.88 | 84 | 200 | -- | -- |
| 420.78 | 0.955 | 12.4 | -1.3 | 1.23 | -1.88 | -- | -4.2 | -0.146 | 8.55 | 85 | 39 | -- | -- |
| 442.22 | 0.979 | 12.4 | -1.16 | 0.712 | -2.4 | -- | -- | -0.132 | 8.36 | 80.35 | 276 | -- | -- |
| 456.24 | 0.995 | 12.4 | -1.46 | -- | -2.43 | -- | -3.28 | -0.0395 | -- | 97 | 330 | -- | -- |
| 505.19 | 1.05 | 12.4 | -1.39 | 1.57 | -- | 2.79 | -- | -0.0715 | 5.42 | -- | -- | -- | -- |
| 521.47 | 1.07 | 12.4 | -1.38 | 1.61 | -- | -- | -- | -0.0818 | 5.93 | -- | -- | -- | -- |
| 455.87 | 0.994 | 12.4 | -1.12 | -- | -2.71 | -- | -- | -0.131 | -- | 81 | 409 | -- | -- |
| 476.42 | 1.02 | 12.4 | -- | 0.687 | -2.5 | -- | -- | -0.0288 | 8.18 | 78.47 | 295 | -- | -- |
| 656.47 | 1.2 | 12.4 | -1.33 | -- | -- | -- | -- | -0.0447 | -- | -- | -- | -- | -- |
| 571.37 | 1.12 | 12.3 | -- | 1.59 | -- | -- | -- | 0.0714 | 5.97 | -- | -- | -- | -- |
| 488.02 | 1.03 | 12.4 | -- | -- | -2.81 | -- | -- | -0.0201 | -- | 79.45 | 425 | -- | -- |
| 702.99 | 1.24 | 12.4 | -- | -- | -- | -- | -- | 0.103 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 369.28 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 2 | 383.72 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 3 | 389.87 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 4 | 390.38 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 5 | 390.76 | radiation | 20 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 6 | 391.87 | radiation | 10 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 7 | 391.93 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 5 |
| 9 | 392.19 | wind | 1 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 10 | 392.24 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 11 | 393.00 | radiation | 30 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 13 | 393.62 | radiation | 20 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 16 | 394.01 | radiation | 10 | 43200 | > th | dose independent | rect. | 7 | 4 |
| 17 | 394.24 | radiation | 10 | 43200 | > th | dose independent | rect. | 17 | 18 |
| 18 | 394.25 | radiation | 40 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 20 | 394.32 | wind | 1 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 22 | 394.50 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 24 | 394.58 | radiation | 10 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 38 | 394.66 | radiation | 10 | 43200 | > th | dose independent | rect. | 7 | 7 |
| 41 | 394.84 | radiation | 10 | 43200 | > th | dose independent | rect. | 5 | 6 |
| 58 | 395.00 | radiation | 10 | 43200 | > th | dose independent | sin | 8 | NA |
| 73 | 395.31 | radiation | 10 | 43200 | > th | dose independent | rect. | 17 | 20 |
| 178 | 396.11 | wind | 1 | 43200 | < th | dose independent | rect. | 8 | 5 |
| 181 | 396.33 | radiation | 40 | 43200 | > th | dose independent | sin | 18 | NA |
| 237 | 396.82 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 260 | 396.94 | radiation | 20 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 391 | 397.27 | radiation | 40 | 43200 | > th | dose independent | no | NA | NA |
| 543 | 397.62 | radiation | 20 | 43200 | > th | dose independent | sin | 3 | NA |
| 565 | 397.73 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 570 | 397.77 | humidity | 90 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 602 | 398.09 | wind | 1 | 43200 | < th | dose independent | rect. | 23 | 3 |
| 626 | 398.19 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 5 |
| 735 | 398.59 | radiation | 20 | 43200 | > th | dose independent | no | NA | NA |
| 949 | 398.85 | radiation | 1 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 954 | 398.91 | radiation | 1 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 977 | 399.05 | radiation | 20 | 43200 | < th | dose independent | rect. | 10 | 3 |