Os01g0805900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tubulin beta-2 chain (Beta-2 tubulin).
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Os01g0805900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tubulin beta-2 chain (Beta-2 tubulin).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 377.88 | 0.913 | 9.37 | -5.1 | 2.52 | 3.37 | 1.08 | -7.27 | 0.28 | 15.2 | 26.55 | 1224 | -- | -- |
| 389.21 | 0.919 | 9.15 | -3.38 | 2.51 | 2.63 | 1.14 | -- | 0.648 | 15.1 | 26.6 | 1210 | -- | -- |
| 381.64 | 0.91 | 9.37 | -5.07 | 2.52 | 3.35 | -- | -7.26 | 0.284 | 15.2 | 26.53 | 1217 | -- | -- |
| 394.49 | 0.925 | 9.16 | -3.38 | 2.53 | 2.58 | -- | -- | 0.629 | 15.2 | 26.56 | 1221 | -- | -- |
| 612.72 | 1.15 | 9.4 | -4.6 | -- | 3.81 | -- | -7.42 | -0.152 | -- | 22.85 | 333 | -- | -- |
| 656.87 | 1.2 | 9.15 | -2.61 | 2.16 | -- | 0.556 | -- | 0.698 | 15.6 | -- | -- | -- | -- |
| 657.8 | 1.2 | 9.15 | -2.6 | 2.16 | -- | -- | -- | 0.702 | 15.7 | -- | -- | -- | -- |
| 610.16 | 1.15 | 9.27 | -3.39 | -- | 3.4 | -- | -- | 0.114 | -- | 21.5 | 252 | -- | -- |
| 667.32 | 1.2 | 9 | -- | 2.46 | 1.86 | -- | -- | 1.39 | 15.4 | 30.4 | 1163 | -- | -- |
| 916.44 | 1.41 | 9.15 | -2.69 | -- | -- | -- | -- | 0.644 | -- | -- | -- | -- | -- |
| 835.8 | 1.35 | 9.09 | -- | 2.21 | -- | -- | -- | 0.991 | 15.7 | -- | -- | -- | -- |
| 895.4 | 1.39 | 9.15 | -- | -- | 2.71 | -- | -- | 0.633 | -- | 22.97 | 269 | -- | -- |
| 1107.18 | 1.55 | 9.08 | -- | -- | -- | -- | -- | 0.942 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 389.69 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 3 | 394.69 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 5 | 396.90 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 20 | 403.30 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 21 |
| 22 | 403.54 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 27 | 404.36 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 28 | 404.41 | temperature | 25 | 1440 | > th | dose dependent | sin | 20 | NA |
| 29 | 404.42 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 12 |
| 34 | 404.53 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 51 | 404.88 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 92 | 405.57 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 13 |
| 132 | 405.95 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 135 | 405.95 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 22 |
| 160 | 406.24 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 190 | 406.60 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 254 | 407.31 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 282 | 407.91 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 314 | 409.51 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 331 | 410.27 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 343 | 410.99 | wind | 5 | 43200 | < th | dose independent | rect. | 8 | 7 |
| 346 | 411.25 | wind | 5 | 43200 | > th | dose independent | rect. | 3 | 13 |
| 353 | 411.57 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 14 |
| 357 | 411.59 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 359 | 411.61 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 361 | 411.62 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 366 | 411.64 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 368 | 411.67 | wind | 5 | 43200 | < th | dose independent | rect. | 3 | 13 |
| 371 | 411.72 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 378 | 412.06 | wind | 5 | 43200 | < th | dose independent | rect. | 24 | 16 |
| 379 | 412.07 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 396 | 412.61 | wind | 5 | 43200 | > th | dose independent | rect. | 24 | 16 |
| 400 | 412.72 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 412 | 413.17 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 426 | 413.21 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 17 |
| 429 | 413.26 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 13 |
| 436 | 413.27 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 21 |
| 437 | 413.27 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 21 |
| 454 | 413.32 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 480 | 413.36 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 489 | 413.38 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 531 | 413.49 | radiation | 40 | 14400 | > th | dose dependent | rect. | 15 | 17 |
| 548 | 413.87 | temperature | 30 | 1440 | < th | dose independent | sin | 19 | NA |
| 568 | 414.43 | temperature | 30 | 1440 | > th | dose independent | sin | 16 | NA |
| 578 | 414.48 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 604 | 414.72 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 623 | 415.33 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 624 | 415.36 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 719 | 415.49 | wind | 5 | 43200 | < th | dose independent | sin | 3 | NA |
| 740 | 415.69 | wind | 5 | 43200 | > th | dose independent | sin | 2 | NA |
| 760 | 416.28 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 6 |
| 781 | 416.92 | wind | 5 | 43200 | > th | dose dependent | rect. | 4 | 11 |
| 790 | 417.22 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 9 |
| 792 | 417.25 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 16 |
| 886 | 418.06 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 4 |