BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0643000 Os02g0643000|AK073818
(259 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0643000 Similar to VAP27 460 e-130
Os04g0534400 Major sperm protein domain containing protein 251 5e-67
Os08g0156700 Similar to VAP27 231 5e-61
Os08g0155100 Major sperm protein domain containing protein 201 6e-52
Os10g0507600 Major sperm protein domain containing protein 176 2e-44
Os01g0936800 PapD-like domain containing protein 150 1e-36
Os10g0549100 Major sperm protein domain containing protein 148 3e-36
Os04g0554200 Major sperm protein domain containing protein 137 9e-33
Os05g0373000 Major sperm protein domain containing protein 130 8e-31
Os11g0274300 Protein kinase-like domain containing protein 123 1e-28
Os02g0661900 Similar to Vesicle-associated membrane protein... 115 3e-26
Os02g0652550 Major sperm protein domain containing protein 102 2e-22
Os10g0200000 Protein kinase-like domain containing protein 99 4e-21
Os10g0161666 Hypothetical protein 80 2e-15
Os04g0369000 Major sperm protein domain containing protein 77 8e-15
AK109135 77 1e-14
>Os02g0643000 Similar to VAP27
Length = 259
Score = 460 bits (1184), Expect = e-130, Method: Compositional matrix adjust.
Identities = 225/239 (94%), Positives = 225/239 (94%)
Query: 1 MQEAKKDSIFGGLASGAPVGADRFPFDPREYSPAMSSDSRELLGIDPPELIFPFELKKQI 60
MQEAKKDSIFGGLASGAPVGADRFPFDPREYSPAMSSDSRELLGIDPPELIFPFELKKQI
Sbjct: 1 MQEAKKDSIFGGLASGAPVGADRFPFDPREYSPAMSSDSRELLGIDPPELIFPFELKKQI 60
Query: 61 SCSLHLTNKTDEYVTFKVKTTSPKKYCVRPNNGIVAPQSTSNVLVTMQAQREAPPDMQCK 120
SCSLHLTNKTDEYVTFKVKTTSPKKYCVRPNNGIVAPQSTSNVLVTMQAQREAPPDMQCK
Sbjct: 61 SCSLHLTNKTDEYVTFKVKTTSPKKYCVRPNNGIVAPQSTSNVLVTMQAQREAPPDMQCK 120
Query: 121 DKFLVQSAIVTQELTPKDITGDMFTKESGNVVDEVKLKVVYTQPHPTXXXXXXXXXXXXX 180
DKFLVQSAIVTQELTPKDITGDMFTKESGNVVDEVKLKVVYTQPHPT
Sbjct: 121 DKFLVQSAIVTQELTPKDITGDMFTKESGNVVDEVKLKVVYTQPHPTSLNGGSEEGLGSL 180
Query: 181 XYQEATKGSRESETVTSEPLALISKLKEEKSSAIQQNMKLREELDLLRRQMGSQHGGFS 239
YQEATKGSRESETVTSEPLALISKLKEEKSSAIQQNMKLREELDLLRRQMGSQHGGFS
Sbjct: 181 SYQEATKGSRESETVTSEPLALISKLKEEKSSAIQQNMKLREELDLLRRQMGSQHGGFS 239
>Os04g0534400 Major sperm protein domain containing protein
Length = 250
Score = 251 bits (640), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 133/229 (58%), Positives = 160/229 (69%), Gaps = 25/229 (10%)
Query: 35 MSSDSRELLGIDPPELIFPFELKKQISCSLHLTNKTDEYVTFKVKTTSPKKYCVRPNNGI 94
M SDS+ELLGI+P EL F FE KKQISCS+ LTN+TD+Y+ FKVKTTSPKKYCVRPN+GI
Sbjct: 1 MGSDSKELLGIEPLELRFSFETKKQISCSMQLTNRTDDYIAFKVKTTSPKKYCVRPNSGI 60
Query: 95 VAPQSTSNVLVTMQAQREAPPDMQCKDKFLVQSAIVTQELTPKDITGDMFTKESGNVVDE 154
V P+STS+V+VTMQAQREAP DMQCKDKFLVQS +VT+ T KD+TG+MF K SGNVVDE
Sbjct: 61 VPPRSTSDVIVTMQAQREAPADMQCKDKFLVQSVVVTEGTTTKDVTGEMFNKGSGNVVDE 120
Query: 155 VKLKVVYTQP-----------HPTXXXXXXXXXXXXXXYQE------------ATKGSRE 191
KLKVVY QP YQ+ AT+ ++
Sbjct: 121 RKLKVVYVQPPRPPSPVREGSEEGSSPRASLSEGGNLNYQDTTRESDEPPLLSATRAHKD 180
Query: 192 SETVT--SEPLALISKLKEEKSSAIQQNMKLREELDLLRRQMGSQHGGF 238
+E VT SE ALIS+L EE++SAIQQN KL EE+DL+RR++ Q+GGF
Sbjct: 181 AEDVTSDSETSALISRLTEERNSAIQQNNKLLEEMDLVRREISKQNGGF 229
>Os08g0156700 Similar to VAP27
Length = 243
Score = 231 bits (588), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 119/213 (55%), Positives = 147/213 (69%), Gaps = 14/213 (6%)
Query: 41 ELLGIDPPELIFPFELKKQISCSLHLTNKTDEYVTFKVKTTSPKKYCVRPNNGIVAPQST 100
ELL IDP EL FPFELKKQISCS+ L+N +D+Y+ FKVKTTSPKKY VRPN G+V P+ST
Sbjct: 11 ELLRIDPVELRFPFELKKQISCSMQLSNLSDDYIAFKVKTTSPKKYSVRPNTGVVLPRST 70
Query: 101 SNVLVTMQAQREAPPDMQCKDKFLVQSAIVTQELTPKDITGDMFTKESGNVVDEVKLKVV 160
+V+VTMQAQREAPPDMQCKDKFLVQS I +T KDITG+MFTKESGN V+EVKL+V
Sbjct: 71 CDVVVTMQAQREAPPDMQCKDKFLVQSVIAPSGVTVKDITGEMFTKESGNKVEEVKLRVT 130
Query: 161 YT--------------QPHPTXXXXXXXXXXXXXXYQEATKGSRESETVTSEPLALISKL 206
Y + P+ + A + E + + E ALI+KL
Sbjct: 131 YIAPPQPPSPVPEESEEGSPSRVSESENGDSLGGGFTRALRERIEPQENSLEAGALINKL 190
Query: 207 KEEKSSAIQQNMKLREELDLLRRQMGSQHGGFS 239
EEK+SAIQQN K+R+ELD++RR++ + GGFS
Sbjct: 191 NEEKNSAIQQNHKIRQELDMMRREISKKRGGFS 223
>Os08g0155100 Major sperm protein domain containing protein
Length = 237
Score = 201 bits (510), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 111/216 (51%), Positives = 131/216 (60%), Gaps = 16/216 (7%)
Query: 39 SRELLGIDPPELIFPFELKKQISCSLHLTNKTDEYVTFKVKTTSPKKYCVRPNNGIVAPQ 98
S L I P EL FPFEL KQ SCS+ LTNKTD YV FKVKTT+PK+YCVRPN G+V P
Sbjct: 2 SASFLEIQPSELSFPFELLKQSSCSMQLTNKTDHYVAFKVKTTNPKQYCVRPNIGVVLPG 61
Query: 99 STSNVLVTMQAQREAPPDMQCKDKFLVQSAIVTQELTPKDITGDMFTKESGNVVDEVKLK 158
ST +V VTMQAQREAPPDMQCKDKFLVQS T +DI+ +MF K +G VV+E KL+
Sbjct: 62 STCDVTVTMQAQREAPPDMQCKDKFLVQSVAAENGATTQDISAEMFNKVAGKVVEEFKLR 121
Query: 159 VVYTQPHPTXXXXXXXXXXXXXXYQEATKGSRESETV---------------TSEPLALI 203
VVY P T A + + T+ +EP ++I
Sbjct: 122 VVYV-PTTTSSAMPEDSEQGSSARPFAQENGIHNSTMPQPVFRSSAEPTKERPTEPSSMI 180
Query: 204 SKLKEEKSSAIQQNMKLREELDLLRRQMGSQHGGFS 239
SKL EE AIQQN KLR EL+LLR++ GGFS
Sbjct: 181 SKLNEENRVAIQQNQKLRHELELLRKESSKSSGGFS 216
>Os10g0507600 Major sperm protein domain containing protein
Length = 240
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 83/126 (65%), Positives = 98/126 (77%)
Query: 39 SRELLGIDPPELIFPFELKKQISCSLHLTNKTDEYVTFKVKTTSPKKYCVRPNNGIVAPQ 98
S +L+ +DPPEL FPFEL KQISC L + NKT+ V FKVKTTSPKKYCVRPNNG+V P+
Sbjct: 4 SCDLVDVDPPELQFPFELDKQISCPLRIANKTERTVAFKVKTTSPKKYCVRPNNGVVRPR 63
Query: 99 STSNVLVTMQAQREAPPDMQCKDKFLVQSAIVTQELTPKDITGDMFTKESGNVVDEVKLK 158
S S V+VTMQAQ APPD+QCKDKFLVQS +V L+ KDIT MF ++ N+V+EVKLK
Sbjct: 64 SASVVVVTMQAQIVAPPDLQCKDKFLVQSVVVDDGLSAKDITSQMFLRDENNMVEEVKLK 123
Query: 159 VVYTQP 164
V Y P
Sbjct: 124 VSYVMP 129
>Os01g0936800 PapD-like domain containing protein
Length = 380
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 71/121 (58%), Positives = 92/121 (76%)
Query: 40 RELLGIDPPELIFPFELKKQISCSLHLTNKTDEYVTFKVKTTSPKKYCVRPNNGIVAPQS 99
++L I P EL F FE+KKQ SC++HL NK++EYV FKVKTTSPK+YCVRPN G++ P+S
Sbjct: 3 QDLAEIHPRELQFTFEVKKQSSCTVHLVNKSNEYVAFKVKTTSPKRYCVRPNTGVILPRS 62
Query: 100 TSNVLVTMQAQREAPPDMQCKDKFLVQSAIVTQELTPKDITGDMFTKESGNVVDEVKLKV 159
T + VTMQAQR APPDMQ KDKFLVQ+ +V + +D+ F+KESG ++E KL+V
Sbjct: 63 TCDFTVTMQAQRTAPPDMQLKDKFLVQTTVVPYGTSDEDLVPSYFSKESGRYIEESKLRV 122
Query: 160 V 160
V
Sbjct: 123 V 123
>Os10g0549100 Major sperm protein domain containing protein
Length = 233
Score = 148 bits (374), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 118/202 (58%), Gaps = 2/202 (0%)
Query: 39 SRELLGIDPPELIFPFELKKQISCSLHLTNKTDEYVTFKVKTTSPKKYCVRPNNGIVAPQ 98
S L+ I P +L F FEL K C+L + N ++ +V FKVKTTSP+KY VRPN I+ P
Sbjct: 4 SGRLISIYPEDLTFLFELDKPCYCNLKVVNNSEHHVAFKVKTTSPRKYFVRPNASIIQPW 63
Query: 99 STSNVLVTMQAQREAPPDMQCKDKFLVQSAIVTQELTPKDITGDMFTKESGNVVDEVKLK 158
+ + +T+QAQ+E PPDMQCKDKFL+QS V +I + F KE V++E+KLK
Sbjct: 64 DSCTITITLQAQKEYPPDMQCKDKFLIQSTKVAASTDMDEIPPNTFNKEVDKVIEEMKLK 123
Query: 159 VVYTQPHPTXXXXXXXXXXXXXXYQEATKGSRESETVTSEPLALISKLKEEKSSAIQQNM 218
VVYT P + ++ + + + E + I +LK+E+ + +QQN
Sbjct: 124 VVYTVPSGS-SDDSGITSLGSRSFKLGSDDLTMLKNASIEKIQTIQRLKDERDTTLQQNQ 182
Query: 219 KLREELDLLRRQMGSQH-GGFS 239
+++ ELD++RR+ + GFS
Sbjct: 183 QMQRELDVIRRRRSRKSDAGFS 204
>Os04g0554200 Major sperm protein domain containing protein
Length = 244
Score = 137 bits (345), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 118/218 (54%), Gaps = 20/218 (9%)
Query: 39 SRELLGIDPPELIFPFELKKQISCSLHLTNKTDEYVTFKVKTTSPKKYCVRPNNGIVAPQ 98
S LL + P EL P+E K++ SC + LTNKT++YV FKVKTT+P+KY VR GI+ P+
Sbjct: 2 SNTLLRVHPSELKIPYEYKRKRSCCMQLTNKTNQYVAFKVKTTNPRKYSVRHACGILPPR 61
Query: 99 STSNVLVTMQAQREAPPDMQCKDKFLVQSAIVTQELTPKDITGDMFTKESGNVVDEVKLK 158
S+ ++ VTMQA E D CKDKFLVQS V T +D ++FTK G V++E KL+
Sbjct: 62 SSCDITVTMQAPVEMLSDYHCKDKFLVQSVAVGYGATMRDFVPELFTKAPGRVIEEFKLR 121
Query: 159 VVYTQPHP-------------------TXXXXXXXXXXXXXXYQEATKGSRESETVTS-E 198
VVY +P +T R ++ V+S E
Sbjct: 122 VVYVAANPPSPVPEEEEEEEEDASPQSEVMSHGVKMTSVFDAVTVSTLTDRSADKVSSAE 181
Query: 199 PLALISKLKEEKSSAIQQNMKLREELDLLRRQMGSQHG 236
+++ S L E+ +++N KL+++++LLR SQ G
Sbjct: 182 GVSVESMLVAEREYPVEENQKLQQQMELLRAARSSQQG 219
>Os05g0373000 Major sperm protein domain containing protein
Length = 477
Score = 130 bits (328), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 86/126 (68%)
Query: 35 MSSDSRELLGIDPPELIFPFELKKQISCSLHLTNKTDEYVTFKVKTTSPKKYCVRPNNGI 94
M S L+ I P E+ F FE+KK+ SC + L NK++EYV FKVKTTSPK+YCVRPN G+
Sbjct: 1 MGSVDFGLVEIHPGEIRFEFEVKKKSSCYVCLVNKSEEYVAFKVKTTSPKRYCVRPNVGV 60
Query: 95 VAPQSTSNVLVTMQAQREAPPDMQCKDKFLVQSAIVTQELTPKDITGDMFTKESGNVVDE 154
+ P++T V MQAQ APPD+Q +DKFLVQ+ +V +DI F+KE G ++E
Sbjct: 61 ILPRATCVFTVIMQAQMIAPPDLQIRDKFLVQTTVVPFGTADEDIAPAFFSKEVGRYIEE 120
Query: 155 VKLKVV 160
KL+VV
Sbjct: 121 NKLRVV 126
>Os11g0274300 Protein kinase-like domain containing protein
Length = 693
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 87/129 (67%), Gaps = 5/129 (3%)
Query: 36 SSDSRELLGIDPP-ELIFPFELKKQISCSLHLTNKTDEYVTFKVKTTSPKKYCVRPNNGI 94
SS+S+ +G+DP EL FPFE+KK ISC L LTN+TD ++ F K KKY +PN G
Sbjct: 559 SSESK-YVGLDPVRELRFPFEVKKDISCCLQLTNQTDYFIAFNTKANQ-KKYSTQPNKGT 616
Query: 95 VAPQSTSNVLVTMQAQREAPPDMQCKDKFLVQSAIVTQELTP--KDITGDMFTKESGNVV 152
+AP S+ V VTM+AQ APP +QC D F+VQS V ++L P +DIT ++F K G VV
Sbjct: 617 IAPWSSCYVTVTMKAQETAPPYLQCHDMFVVQSTRVNEDLEPETEDITEELFKKTMGKVV 676
Query: 153 DEVKLKVVY 161
DE KL +VY
Sbjct: 677 DEEKLPIVY 685
>Os02g0661900 Similar to Vesicle-associated membrane protein-associated protein
B/C (VAMP- associated protein B/C) (VAMP-B/VAMP-C)
(VAP-B/VAP-C). Splice isoform 2
Length = 106
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/105 (55%), Positives = 70/105 (66%)
Query: 39 SRELLGIDPPELIFPFELKKQISCSLHLTNKTDEYVTFKVKTTSPKKYCVRPNNGIVAPQ 98
S LL I P EL PFELK+Q S L LTNKTD +V FKVKTT+P+KY VRP GIV P+
Sbjct: 2 SNTLLRIYPSELKIPFELKRQNSGILELTNKTDHHVAFKVKTTNPRKYSVRPTTGIVLPR 61
Query: 99 STSNVLVTMQAQREAPPDMQCKDKFLVQSAIVTQELTPKDITGDM 143
+ + ++MQ +E P D CKDKFL+QS +V T KDI DM
Sbjct: 62 GSCGITISMQPPKEIPTDYNCKDKFLIQSVVVEDGTTQKDIHSDM 106
>Os02g0652550 Major sperm protein domain containing protein
Length = 120
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/89 (53%), Positives = 62/89 (69%)
Query: 42 LLGIDPPELIFPFELKKQISCSLHLTNKTDEYVTFKVKTTSPKKYCVRPNNGIVAPQSTS 101
L+ I P +L F FEL K C+L + N ++ +V FKVKTTSP+KY VRPN IV P +
Sbjct: 7 LISIYPEDLTFLFELDKPCYCNLKVVNNSEHHVAFKVKTTSPRKYFVRPNANIVQPWDSC 66
Query: 102 NVLVTMQAQREAPPDMQCKDKFLVQSAIV 130
+ +T+QAQ+E P DMQCKDKFL+QS V
Sbjct: 67 TITITLQAQKEYPQDMQCKDKFLIQSTRV 95
>Os10g0200000 Protein kinase-like domain containing protein
Length = 478
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 75/122 (61%), Gaps = 4/122 (3%)
Query: 33 PAMSSDS--RELLGIDPPELIFPFELKKQISCSLHLTNKTDEYVTFKVKTTSPKKYCVRP 90
PA DS +E+L ++P EL FP + +++ SCS+ L NKT YV +K+ Y + P
Sbjct: 342 PAHQVDSNMKEILSVNPLELWFPMKAQEEFSCSMLLKNKTHHYVAYKINAQKLNIYRIEP 401
Query: 91 NNGIVAPQSTSNVLVTMQAQREAPPDMQCKDKFLVQSAIVTQELTPKDITGDMFTKESGN 150
+G+++PQ T N+ V MQAQ+ P+MQ D+ LVQS +V+ +L DI D+ K+ G
Sbjct: 402 CSGLISPQFTCNISVRMQAQQGVSPNMQLMDRILVQSVVVSDDLI--DIAKDLSCKQKGK 459
Query: 151 VV 152
+V
Sbjct: 460 LV 461
>Os10g0161666 Hypothetical protein
Length = 67
Score = 80.1 bits (196), Expect = 2e-15, Method: Composition-based stats.
Identities = 39/42 (92%), Positives = 42/42 (100%)
Query: 198 EPLALISKLKEEKSSAIQQNMKLREELDLLRRQMGSQHGGFS 239
+PLALISKLKEEKSSAIQQNMKL+EELDLLRRQMGSQ+GGFS
Sbjct: 6 QPLALISKLKEEKSSAIQQNMKLQEELDLLRRQMGSQNGGFS 47
>Os04g0369000 Major sperm protein domain containing protein
Length = 137
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 69/123 (56%), Gaps = 5/123 (4%)
Query: 41 ELLGIDPPELIFPFELKKQISCSLHLTNKTDEYVTFKVKTTSPKKYCVRPNNGIVAPQST 100
E L IDP E+ FPFE + +SC L LTN++ + V F V+ KY P+ G+V P+S
Sbjct: 9 ERLVIDPLEVRFPFEKDRDVSCVLQLTNRSADRVAFAVQVDE-SKYRAVPDRGVVQPRSR 67
Query: 101 SNVLVTMQAQREAPPDMQCKDKFLVQSAIVTQELTPKDITGDMFTKESGNVVD--EVKLK 158
++ T +AQ AP ++Q D FL++S V E + D + F K G VD ++L
Sbjct: 68 RYIVATSRAQASAPTNLQRDDSFLLRSKRV--EGSADDDFAEDFEKLMGKAVDGETMRLP 125
Query: 159 VVY 161
VVY
Sbjct: 126 VVY 128
>AK109135
Length = 294
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 61/103 (59%), Gaps = 6/103 (5%)
Query: 43 LGIDPPELIFPFELKKQISCSLHLTNKTDEYVTFKVKTTSPKKYCVRPNNGIVAPQSTSN 102
L I P +L+F K I+ S+ LTN + E +++KVKTT+PK+YCV+PN G ++P +
Sbjct: 6 LKISPADLVFLPPFTKPINNSIKLTNTSTEALSYKVKTTAPKRYCVKPNTGTISPNESVE 65
Query: 103 VLVTMQAQREAPPDMQCKDKFLVQSAIVTQELTPKDITGDMFT 145
V +T+ ++ P + + DKF +Q VT D T D+ T
Sbjct: 66 VTITLNFTKDPPANPKVADKFQIQCIPVT------DTTADLKT 102
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.129 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,668,860
Number of extensions: 293532
Number of successful extensions: 671
Number of sequences better than 1.0e-10: 17
Number of HSP's gapped: 666
Number of HSP's successfully gapped: 17
Length of query: 259
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 160
Effective length of database: 11,866,615
Effective search space: 1898658400
Effective search space used: 1898658400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 155 (64.3 bits)