Os02g0643000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to VAP27.
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Os02g0643000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to VAP27.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.17 | 0.355 | 11.6 | 0.764 | 2.95 | 0.722 | 1.36 | -0.807 | 0.142 | 6.44 | 30.12 | 339 | -- | -- |
| 57.79 | 0.354 | 11.6 | 0.695 | 2.93 | 0.779 | 1.24 | -- | 0.135 | 6.42 | 29.9 | 389 | -- | -- |
| 61.03 | 0.364 | 11.6 | 0.668 | 2.93 | 0.781 | -- | -0.0952 | 0.103 | 6.4 | 30.3 | 378 | -- | -- |
| 60.95 | 0.364 | 11.6 | 0.659 | 2.94 | 0.772 | -- | -- | 0.104 | 6.39 | 30.2 | 384 | -- | -- |
| 392.41 | 0.923 | 11.6 | 1.2 | -- | 3.58 | -- | 0.477 | 0.498 | -- | 41.72 | 400 | -- | -- |
| 64.61 | 0.377 | 11.7 | 0.444 | 3.15 | -- | 1.23 | -- | -0.0389 | 6.36 | -- | -- | -- | -- |
| 68.36 | 0.387 | 11.7 | 0.459 | 3.16 | -- | -- | -- | -0.0432 | 6.34 | -- | -- | -- | -- |
| 392.48 | 0.923 | 11.6 | 1.29 | -- | 3.58 | -- | -- | 0.524 | -- | 46.56 | 393 | -- | -- |
| 70.94 | 0.392 | 11.7 | -- | 3.03 | 0.494 | -- | -- | -0.0343 | 6.36 | 49.92 | 389 | -- | -- |
| 585.98 | 1.13 | 11.7 | 0.542 | -- | -- | -- | -- | 0.0244 | -- | -- | -- | -- | -- |
| 73.91 | 0.402 | 11.7 | -- | 3.16 | -- | -- | -- | -0.0943 | 6.34 | -- | -- | -- | -- |
| 433.51 | 0.97 | 11.7 | -- | -- | 3.14 | -- | -- | 0.329 | -- | 60.19 | 389 | -- | -- |
| 593.73 | 1.14 | 11.7 | -- | -- | -- | -- | -- | -0.0357 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.84 | temperature | 20.0 | 270 | > th | dose independent | rect. | 12 | 14 |
| 2 | 53.93 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 19 | 17 |
| 4 | 53.96 | atmosphere | 1000.0 | 90 | > th | dose dependent | rect. | 18 | 17 |
| 7 | 54.09 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 16 |
| 24 | 54.55 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 25 | 54.56 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 49 | 54.93 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 17 | 10 |
| 54 | 54.99 | temperature | 20.0 | 30 | > th | dose independent | rect. | 12 | 16 |
| 63 | 55.08 | atmosphere | 1005.0 | 30 | > th | dose dependent | sin | 8 | NA |
| 73 | 55.14 | temperature | 30.0 | 270 | < th | dose dependent | sin | 20 | NA |
| 83 | 55.19 | temperature | 20.0 | 30 | > th | dose independent | rect. | 14 | 14 |
| 89 | 55.22 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 17 | 16 |
| 90 | 55.22 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 98 | 55.28 | temperature | 20.0 | 10 | > th | dose independent | rect. | 12 | 18 |
| 105 | 55.33 | wind | 1.0 | 270 | < th | dose dependent | rect. | 24 | 1 |
| 160 | 55.64 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 22 | 8 |
| 162 | 55.65 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 21 |
| 163 | 55.66 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 21 |
| 168 | 55.66 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 180 | 55.72 | radiation | 40.0 | 270 | < th | dose independent | rect. | 9 | 14 |
| 181 | 55.72 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 19 |
| 208 | 55.81 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 212 | 55.82 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 217 | 55.84 | radiation | 40.0 | 270 | < th | dose independent | rect. | 17 | 21 |
| 247 | 55.97 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 22 | 2 |
| 264 | 56.01 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 273 | 56.04 | wind | 1.0 | 270 | < th | dose independent | rect. | 23 | 2 |
| 286 | 56.07 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 294 | 56.10 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 3 | 6 |
| 301 | 56.12 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 2 | 8 |
| 324 | 56.18 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 344 | 56.22 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 1 | 5 |
| 352 | 56.24 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 1 | 18 |
| 362 | 56.27 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 1 | 7 |
| 366 | 56.28 | wind | 1.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 371 | 56.29 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 19 | 17 |
| 375 | 56.29 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 21 | 13 |
| 396 | 56.33 | radiation | 40.0 | 270 | > th | dose independent | rect. | 12 | 3 |
| 432 | 56.35 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 18 | 15 |
| 434 | 56.36 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 444 | 56.37 | temperature | 15.0 | 270 | > th | dose dependent | sin | 21 | NA |
| 455 | 56.39 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 459 | 56.40 | wind | 5.0 | 10 | > th | dose independent | rect. | 12 | 20 |
| 479 | 56.43 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 11 | 6 |
| 485 | 56.44 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 3 | 15 |
| 493 | 56.44 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 3 | 15 |
| 507 | 56.45 | atmosphere | 1005.0 | 720 | > th | dose dependent | rect. | 17 | 9 |
| 508 | 56.46 | radiation | 20.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 540 | 56.48 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 8 | 15 |
| 551 | 56.49 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 22 | 19 |
| 580 | 56.51 | humidity | 80.0 | 14400 | > th | dose dependent | sin | 8 | NA |
| 629 | 56.58 | atmosphere | 1005.0 | 720 | > th | dose independent | sin | 14 | NA |
| 662 | 56.62 | radiation | 30.0 | 270 | > th | dose independent | sin | 15 | NA |
| 671 | 56.63 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 740 | 56.70 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 12 | 5 |
| 751 | 56.71 | wind | 5.0 | 90 | > th | dose independent | rect. | 12 | 20 |
| 754 | 56.71 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 1 | 1 |
| 809 | 56.75 | wind | 1.0 | 90 | > th | dose dependent | rect. | 12 | 7 |
| 854 | 56.78 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 10 | 16 |
| 918 | 56.84 | radiation | 1.0 | 270 | > th | dose dependent | sin | 16 | NA |
| 919 | 56.84 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 921 | 56.84 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 21 | 3 |
| 927 | 56.84 | radiation | 10.0 | 270 | > th | dose dependent | rect. | 12 | 20 |
| 932 | 56.85 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 945 | 56.86 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 960 | 56.88 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 17 | 9 |