BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0643000 Os02g0643000|AK073818
(259 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G45140.1 | chr2:18611029-18612971 FORWARD LENGTH=240 208 2e-54
AT3G60600.1 | chr3:22400537-22402408 FORWARD LENGTH=257 198 2e-51
AT4G00170.1 | chr4:70732-72085 REVERSE LENGTH=240 189 9e-49
AT5G47180.1 | chr5:19161384-19163265 REVERSE LENGTH=221 166 1e-41
AT2G23830.1 | chr2:10143646-10144511 FORWARD LENGTH=150 156 8e-39
AT1G51270.3 | chr1:19007577-19011225 FORWARD LENGTH=638 153 8e-38
AT1G08820.1 | chr1:2821810-2824412 REVERSE LENGTH=387 145 2e-35
AT4G05060.1 | chr4:2590245-2592000 REVERSE LENGTH=288 60 2e-09
AT4G21450.3 | chr4:11426136-11428125 FORWARD LENGTH=315 52 3e-07
AT5G54110.1 | chr5:21958356-21960367 FORWARD LENGTH=267 48 6e-06
>AT2G45140.1 | chr2:18611029-18612971 FORWARD LENGTH=240
Length = 239
Score = 208 bits (530), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 110/216 (50%), Positives = 142/216 (65%), Gaps = 16/216 (7%)
Query: 39 SRELLGIDPPELIFPFELKKQISCSLHLTNKTDEYVTFKVKTTSPKKYCVRPNNGIVAPQ 98
S ELL IDP +L FPFELKKQISCSL+L NKTD YV FKVKTT+PKKYCVRPN G+V P+
Sbjct: 2 SNELLTIDPVDLQFPFELKKQISCSLYLGNKTDNYVAFKVKTTNPKKYCVRPNTGVVHPR 61
Query: 99 STSNVLVTMQAQREAPPDMQCKDKFLVQSAIVTQELTPKDITGDMFTKESGNVVDEVKLK 158
S+S VLVTMQAQ+EAP D+QCKDKFL+Q + + TPKD+T +MF+KE+G+ V+E KL+
Sbjct: 62 SSSEVLVTMQAQKEAPADLQCKDKFLLQCVVASPGATPKDVTHEMFSKEAGHRVEETKLR 121
Query: 159 VVYTQP---------------HPTXXXXXXXXXXXXXXYQEATKGSRESETVTSEPLALI 203
VVY P P + +++ +SE AL+
Sbjct: 122 VVYVAPPRPPSPVREGSEEGSSPRASVSDNGNASDFTAAPRFSADRVDAQDNSSEARALV 181
Query: 204 SKLKEEKSSAIQQNMKLREELDLLRRQMG-SQHGGF 238
+KL EEK+SA+Q N +L++ELD LRR+ S+ GG
Sbjct: 182 TKLTEEKNSAVQLNNRLQQELDQLRRESKRSKSGGI 217
>AT3G60600.1 | chr3:22400537-22402408 FORWARD LENGTH=257
Length = 256
Score = 198 bits (503), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 110/214 (51%), Positives = 135/214 (63%), Gaps = 16/214 (7%)
Query: 41 ELLGIDPPELIFPFELKKQISCSLHLTNKTDEYVTFKVKTTSPKKYCVRPNNGIVAPQST 100
ELL ++P +L FPFELKKQISCSL+LTNKTD V FKVKTT+PKKYCVRPN G+V P+ST
Sbjct: 21 ELLTVEPLDLQFPFELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGVVLPRST 80
Query: 101 SNVLVTMQAQREAPPDMQCKDKFLVQSAIVTQELTPKDITGDMFTKESGNVVDEVKLKVV 160
VLVTMQAQ+EAP DMQCKDKFL+Q I + +T K++T +MF+KE+G+ V+E KL+V
Sbjct: 81 CEVLVTMQAQKEAPSDMQCKDKFLLQGVIASPGVTAKEVTPEMFSKEAGHRVEETKLRVT 140
Query: 161 YTQP---------------HPTXXXXXXXXXXXXXXYQEATKGSRESETVTSEPLALISK 205
Y P P + + TSE ALI+K
Sbjct: 141 YVAPPRPPSPVHEGSEEGSSPRASVSDNGHGSEFSFERFIVDNKAGHQENTSEARALITK 200
Query: 206 LKEEKSSAIQQNMKLREELDLLRRQ-MGSQHGGF 238
L EEK SAIQ N +L+ ELD LRR+ SQ GG
Sbjct: 201 LTEEKQSAIQLNNRLQRELDQLRRESKKSQSGGI 234
>AT4G00170.1 | chr4:70732-72085 REVERSE LENGTH=240
Length = 239
Score = 189 bits (481), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 101/214 (47%), Positives = 136/214 (63%), Gaps = 15/214 (7%)
Query: 41 ELLGIDPPELIFPFELKKQISCSLHLTNKTD-EYVTFKVKTTSPKKYCVRPNNGIVAPQS 99
+L+ I P EL FPFELKKQ SCS+ LTNKT + V FKVKTT+P+KYCVRPN G+V P
Sbjct: 5 DLVNIHPTELKFPFELKKQSSCSMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVVLPGD 64
Query: 100 TSNVLVTMQAQREAPPDMQCKDKFLVQSAIVTQELTPKDITGDMFTKESGNVVDEVKLKV 159
+ NV VTMQAQ+EAP DMQCKDKFLVQ+ +V+ T K++ +MF KE+G V+++ KL+V
Sbjct: 65 SCNVTVTMQAQKEAPLDMQCKDKFLVQTVVVSDGTTSKEVLAEMFNKEAGRVIEDFKLRV 124
Query: 160 VYTQPHPTX-------------XXXXXXXXXXXXXYQEATKGSRESETVTSEPLALISKL 206
VY +P + + ++ E+ +SE ++ISKL
Sbjct: 125 VYIPANPPSPVPEGSEEGNSPMASLNDIASQSASLFDDVSRTFEETSEKSSEAWSMISKL 184
Query: 207 KEEKSSAIQQNMKLREELDLLRRQMG-SQHGGFS 239
EEK+SA QQ+ KLR EL++LR++ Q GG S
Sbjct: 185 TEEKTSATQQSQKLRLELEMLRKETSKKQSGGHS 218
>AT5G47180.1 | chr5:19161384-19163265 REVERSE LENGTH=221
Length = 220
Score = 166 bits (420), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 121/197 (61%), Gaps = 14/197 (7%)
Query: 41 ELLGIDPPELIFPFELKKQISCSLHLTNKTDEYVTFKVKTTSPKKYCVRPNNGIVAPQST 100
+L+ I P EL F FEL+KQ C L + NKT+ YV FKVKTTSPKKY VRPN G++ P +
Sbjct: 8 QLISIQPDELKFLFELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTGVIQPWDS 67
Query: 101 SNVLVTMQAQREAPPDMQCKDKFLVQSAIVTQELTPKDITGDMFTKESGNVVDEVKLKVV 160
+ VT+QAQRE PPDMQCKDKFL+QS IV ++ D FTK+SG + E KLKV
Sbjct: 68 CIIRVTLQAQREYPPDMQCKDKFLLQSTIVPPHTDVDELPQDTFTKDSGKTLTECKLKVS 127
Query: 161 YTQPHPTXXXXXXXXXXXXXXYQEATKGSRESETVTSEPLALISKLKEEKSSAIQQNMKL 220
Y P T + + G+ + +SE ++ I +LKEE+ +A++Q +L
Sbjct: 128 YITPSTTQ--------------RSSESGATNGDGQSSETISTIQRLKEERDAAVKQTQQL 173
Query: 221 REELDLLRRQMGSQHGG 237
+ EL+ +RR+ ++ G
Sbjct: 174 QHELETVRRRRNQRNSG 190
>AT2G23830.1 | chr2:10143646-10144511 FORWARD LENGTH=150
Length = 149
Score = 156 bits (395), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 74/124 (59%), Positives = 96/124 (77%)
Query: 38 DSRELLGIDPPELIFPFELKKQISCSLHLTNKTDEYVTFKVKTTSPKKYCVRPNNGIVAP 97
+ ELL I+P L FPFELKKQ+SCSL+LTNKTD V FKVKTT+ YCVRPN G++ P
Sbjct: 2 SNNELLEIEPMYLQFPFELKKQMSCSLYLTNKTDNNVAFKVKTTNRNNYCVRPNYGLILP 61
Query: 98 QSTSNVLVTMQAQREAPPDMQCKDKFLVQSAIVTQELTPKDITGDMFTKESGNVVDEVKL 157
+ST VLVTMQAQ+E P DMQ +KF++QS + + +T K++T +MF+KESG+VV+E KL
Sbjct: 62 KSTCKVLVTMQAQKEVPSDMQSFEKFMIQSVLASPGVTAKEVTREMFSKESGHVVEETKL 121
Query: 158 KVVY 161
+V Y
Sbjct: 122 RVTY 125
>AT1G51270.3 | chr1:19007577-19011225 FORWARD LENGTH=638
Length = 637
Score = 153 bits (387), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 73/126 (57%), Positives = 94/126 (74%)
Query: 39 SRELLGIDPPELIFPFELKKQISCSLHLTNKTDEYVTFKVKTTSPKKYCVRPNNGIVAPQ 98
S ELL IDP ++ FP EL K++SCSL+LTNKT+ YV FK KTT+ KKY VRPN G+V P+
Sbjct: 173 SDELLIIDPVDVQFPIELNKKVSCSLNLTNKTENYVAFKAKTTNAKKYYVRPNVGVVLPR 232
Query: 99 STSNVLVTMQAQREAPPDMQCKDKFLVQSAIVTQELTPKDITGDMFTKESGNVVDEVKLK 158
S+ VLV MQA +EAP DMQC+DK L Q +V E T KD+T +MF+KE+G+ +E +LK
Sbjct: 233 SSCEVLVIMQALKEAPADMQCRDKLLFQCKVVEPETTAKDVTSEMFSKEAGHPAEETRLK 292
Query: 159 VVYTQP 164
V+Y P
Sbjct: 293 VMYVTP 298
Score = 141 bits (355), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 69/130 (53%), Positives = 90/130 (69%), Gaps = 2/130 (1%)
Query: 35 MSSDSRELLGIDPPELIFPFELKKQISCSLHLTNKTDEYVTFKVKTTSPKKYCVRPNNGI 94
MS+D ELL D ++ FP EL KQ SCSL+LTNKTD YV FK +TT PK YCV+P+ G+
Sbjct: 1 MSTD--ELLTFDHVDIRFPIELNKQGSCSLNLTNKTDNYVAFKAQTTKPKMYCVKPSVGV 58
Query: 95 VAPQSTSNVLVTMQAQREAPPDMQCKDKFLVQSAIVTQELTPKDITGDMFTKESGNVVDE 154
V P+S+ VLV MQA +EAP D QCKDK L Q +V K++T +MF+KE+G+ V+E
Sbjct: 59 VLPRSSCEVLVVMQALKEAPADRQCKDKLLFQCKVVEPGTMDKEVTSEMFSKEAGHRVEE 118
Query: 155 VKLKVVYTQP 164
K++Y P
Sbjct: 119 TIFKIIYVAP 128
>AT1G08820.1 | chr1:2821810-2824412 REVERSE LENGTH=387
Length = 386
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/123 (58%), Positives = 84/123 (68%)
Query: 42 LLGIDPPELIFPFELKKQISCSLHLTNKTDEYVTFKVKTTSPKKYCVRPNNGIVAPQSTS 101
LL I P L F +LKKQ SC + LTN T YV FKVKTTSPKKYCVRPN G+VAP+ST
Sbjct: 5 LLDIQPRTLQFAVDLKKQTSCVVQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAPKSTC 64
Query: 102 NVLVTMQAQREAPPDMQCKDKFLVQSAIVTQELTPKDITGDMFTKESGNVVDEVKLKVVY 161
V MQA +E PPDM CKDKFL+QS V+ E T +DIT MF+K G ++E KL+V
Sbjct: 65 EFTVIMQAFKEPPPDMVCKDKFLIQSTAVSAETTDEDITASMFSKAEGKHIEENKLRVTL 124
Query: 162 TQP 164
P
Sbjct: 125 VPP 127
>AT4G05060.1 | chr4:2590245-2592000 REVERSE LENGTH=288
Length = 287
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 14/143 (9%)
Query: 33 PAMSSDSRELL------GIDP-PELIFPFELKKQISCSLHLTNKTDEYVTFKVKTTSPKK 85
P+MSS +R LL +DP +L FP+E KQ+ ++ + N + +V FK +TT PK
Sbjct: 84 PSMSSVARSLLPTKRRLKLDPSAKLYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTVPKS 143
Query: 86 YCVRPNNGIVAPQ----STSNVLVTMQAQREAPPDMQCKDKFLVQSAIVTQELTPKDITG 141
+RP I+AP +T V E P + + KF + S + P D
Sbjct: 144 CFMRPAGAILAPGEEIIATVFKFVEPPENNEKPMEQKSGVKFKIMSLKMK---VPTDYMP 200
Query: 142 DMFTKESGNVVDEVKLKVVYTQP 164
++F ++ +V +E ++VV+ P
Sbjct: 201 ELFEEQKDHVSEEQVMRVVFLDP 223
>AT4G21450.3 | chr4:11426136-11428125 FORWARD LENGTH=315
Length = 314
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 23 RFPFDPRE--YSPAMSSDSRELLGIDPPELIFPF-ELKKQISCSLHLTNKTDEYVTFKVK 79
R DP E Y P S+ +L ID F E KQ+ ++ + N + +V FK +
Sbjct: 107 RLKLDPSEKLYFPWFVSE--DLRSIDTSLKFLSFNEPGKQVRSAIKIKNTSKSHVAFKFQ 164
Query: 80 TTSPKKYCVRPNNGIVAPQSTSNVLVTM------QAQREAPPDMQCKDKFLVQSAIVTQE 133
TT+PK +RP I+AP T ++ T+ E P D + + KF + S V
Sbjct: 165 TTAPKSCFMRPPGAILAPGET--IIATVFKFVEPPENNEKPMDQRSRVKFKIMSLKVK-- 220
Query: 134 LTPKDITGDMFTKESGNVVDEVKLKVVYTQP 164
P D ++F ++ +V E L+V++ P
Sbjct: 221 -GPMDYVPELFDEQKDDVSKEQILRVIFLDP 250
>AT5G54110.1 | chr5:21958356-21960367 FORWARD LENGTH=267
Length = 266
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 12/119 (10%)
Query: 50 LIFPFELKKQISCSLHLTNKTDEYVTFKVKTTSPKKYCVRPNNGIVAPQSTSNVLVTM-- 107
L FP+E KQ+ ++ L N + + FK +TT+PK +RP G++AP + V T+
Sbjct: 85 LYFPYEPGKQVRSAIKLKNTSKSHTAFKFQTTAPKSCYMRPPGGVLAPGES--VFATVFK 142
Query: 108 -----QAQREAPPDMQCKDKFLVQSAIVTQELTPKDITGDMFTKESGNVVDEVKLKVVY 161
+ + P + + K KF + S V + + ++F ++ V E L+V++
Sbjct: 143 FVEHPENNEKQPLNQKSKVKFKIMSLKVKPGV---EYVPELFDEQKDQVAVEQVLRVIF 198
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.129 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,932,872
Number of extensions: 194300
Number of successful extensions: 428
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 425
Number of HSP's successfully gapped: 11
Length of query: 259
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 163
Effective length of database: 8,474,633
Effective search space: 1381365179
Effective search space used: 1381365179
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 110 (47.0 bits)