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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0549100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Major sperm protein domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.97 (0.0412) R2 : 0.0864
β1 : 0.208 (0.153) R2dD : 0.00417 R2D : -0.00123
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.24 (0.508) R2dE : 0.272 R2E : -0.19
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 7.13 (1.15) R2dD*E : 0.256 R2D*E : -0.174
γ1 : 0.000711 (0.0868) R2dN8 : -1.71e-06 R2N8 : -0.00516
σ : 0.749
deviance : 258.64
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 19.8
memory length : 74
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 16.4
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
255.61 0.751 2.97 0.206 0.216 3.31 0.223 7.32 0.00197 12.7 19.8 71 16.3 --
274.84 0.772 2.93 0.235 0.188 0.533 0.16 -- 0.0276 11.7 22.58 813 16.3 --
255.78 0.745 2.97 0.209 0.216 3.27 -- 7.29 0.000916 12.3 19.8 70 16.3 --
274.07 0.771 2.92 0.315 0.174 0.523 -- -- 0.075 11.3 22.9 816 15.4 --
258.64 0.749 2.97 0.208 -- 3.24 -- 7.13 0.000711 -- 19.8 74 16.4 --
280.53 0.785 2.92 0.198 0.148 -- -0.0702 -- -0.027 11.4 -- -- -- --
280.54 0.784 2.92 0.195 0.148 -- -- -- -0.0271 11.6 -- -- -- --
275.6 0.773 2.9 0.351 -- 0.657 -- -- 0.0885 -- 22.9 813 16.7 --
276.03 0.774 2.9 -- 0.217 0.569 -- -- 0.0365 11.4 22.95 700 14.5 --
281.92 0.785 2.92 0.191 -- -- -- -- -0.0288 -- -- -- -- --
281.55 0.785 2.92 -- 0.146 -- -- -- -0.0489 11.5 -- -- -- --
278.07 0.777 2.91 -- -- 0.591 -- -- 0.0283 -- 22.4 813 16.2 --
282.89 0.785 2.93 -- -- -- -- -- -0.05 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 250.47 temperature 20.0 270 < th dose independent rect. 18 1
2 250.47 temperature 20.0 270 < th dose dependent rect. 18 1
7 251.74 temperature 20.0 270 < th dose dependent rect. 12 7
8 251.75 temperature 20.0 270 < th dose independent rect. 11 8
17 252.85 wind 5.0 10 > th dose dependent rect. 19 3
32 255.16 wind 5.0 30 > th dose independent rect. 19 3
36 255.62 wind 5.0 30 > th dose dependent rect. 19 14
40 255.71 wind 5.0 30 > th dose dependent rect. 19 10
41 255.72 temperature 20.0 90 < th dose independent rect. 7 14
67 257.06 temperature 20.0 90 < th dose independent sin 22 NA
70 257.23 temperature 20.0 30 > th dose independent sin 22 NA
81 258.14 temperature 20.0 90 < th dose independent rect. 5 17
92 258.35 temperature 30.0 90 > th dose dependent rect. 8 3
117 258.47 wind 5.0 30 > th dose independent rect. 19 14
123 258.76 wind 3.0 270 > th dose dependent rect. 19 1
128 258.93 wind 5.0 30 > th dose independent rect. 19 10
144 259.43 temperature 30.0 90 < th dose independent rect. 23 15
161 259.75 temperature 30.0 90 > th dose independent rect. 9 2
182 260.12 temperature 20.0 90 < th dose independent rect. 3 19
222 260.58 humidity 90.0 10 < th dose dependent rect. 22 1
262 261.10 temperature 30.0 10 > th dose dependent rect. 9 3
300 261.53 temperature 20.0 30 < th dose independent rect. 2 21
354 262.07 wind 1.0 10 > th dose dependent rect. 22 1
362 262.15 temperature 30.0 10 > th dose dependent sin 8 NA
374 262.37 temperature 30.0 10 < th dose independent rect. 23 15
378 262.46 temperature 20.0 90 < th dose dependent rect. 7 14
393 262.75 wind 3.0 30 > th dose independent rect. 22 1
413 263.02 temperature 30.0 90 > th dose independent sin 8 NA
430 263.19 humidity 80.0 10 < th dose dependent rect. 20 2
458 263.36 atmosphere 1005.0 10 < th dose dependent rect. 6 6
479 263.66 temperature 20.0 10 < th dose dependent rect. 7 14
539 264.06 temperature 30.0 90 < th dose independent sin 7 NA
571 264.46 humidity 90.0 10 < th dose independent rect. 22 1
572 264.46 atmosphere 1005.0 10 > th dose dependent rect. 22 1
679 265.24 temperature 30.0 30 < th dose dependent rect. 22 1
693 265.31 atmosphere 1005.0 30 > th dose dependent rect. 15 8
752 265.63 atmosphere 1005.0 270 > th dose dependent rect. 18 1
759 265.66 atmosphere 1005.0 10 < th dose dependent rect. 4 8
769 265.72 temperature 30.0 10 > th dose dependent rect. 12 1
772 265.73 atmosphere 1000.0 30 > th dose independent rect. 22 1
793 265.83 humidity 80.0 10 < th dose independent rect. 20 2
800 265.89 wind 5.0 30 < th dose independent rect. 22 1
803 265.89 temperature 10.0 30 > th dose independent rect. 22 1
805 265.89 temperature 30.0 30 < th dose independent rect. 22 1
806 265.89 humidity 50.0 30 > th dose independent rect. 22 1
810 265.89 atmosphere 1010.0 30 < th dose independent rect. 22 1
812 265.89 radiation 1.0 30 < th dose independent rect. 22 1
818 265.89 temperature 10.0 30 > th dose independent rect. 23 23
819 265.89 radiation 1.0 30 < th dose dependent rect. 22 1
831 265.93 radiation 20.0 4320 < th dose dependent rect. 23 1
836 266.00 radiation 1.0 10 < th dose independent rect. 6 11
837 266.00 wind 9.0 30 < th dose independent rect. 23 23
849 266.10 atmosphere 1005.0 30 > th dose dependent rect. 19 4
860 266.18 temperature 10.0 30 > th dose dependent rect. 22 1
884 266.35 humidity 50.0 30 > th dose dependent rect. 22 1
889 266.43 atmosphere 1005.0 90 < th dose independent rect. 6 6
893 266.45 wind 9.0 1440 < th dose independent rect. 23 1
894 266.45 temperature 10.0 1440 > th dose independent rect. 23 1
897 266.45 temperature 30.0 1440 < th dose independent rect. 23 1
901 266.45 humidity 50.0 1440 > th dose independent rect. 23 1
911 266.45 atmosphere 995.0 1440 > th dose independent rect. 23 1
912 266.45 radiation 1.0 1440 < th dose independent rect. 23 1
932 266.45 temperature 10.0 1440 > th dose independent rect. 24 23
941 266.46 wind 9.0 30 < th dose dependent rect. 22 1
974 266.53 atmosphere 1015.0 30 < th dose dependent rect. 22 1
979 266.55 precipitation 0.1 30 < th dose independent rect. 22 1
981 266.55 precipitation 0.1 30 < th dose dependent rect. 22 1
986 266.57 atmosphere 1005.0 270 < th dose dependent rect. 7 1
993 266.59 humidity 90.0 90 > th dose independent rect. 14 1
997 266.59 humidity 90.0 90 > th dose dependent rect. 14 1