FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0554200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Major sperm protein domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.97 (0.0477) R2 : 0.321
β1 : -1.91 (0.175) R2dD : 0.183 R2D : 0.146
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.33 (0.129) R2dE : 0.157 R2E : 0.139
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.329 (0.102) R2dN8 : 0.0199 R2N8 : -0.00837
σ : 0.892
deviance : 366.92
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.5274
memory length : 578
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
326.05 0.848 4.02 -2.2 1.42 -1.9 -3.53 4.23 -0.376 23.8 0.2383 275 -- --
346.41 0.867 4 -1.93 1.24 -1.63 0.255 -- -0.373 23.2 0.3793 252 -- --
340.21 0.859 3.97 -1.95 1.07 -1.45 -- 1.46 -0.296 22.8 0.2718 271 -- --
345.51 0.866 4 -1.98 1.7 -2.1 -- -- -0.347 0.0927 0.3934 254 -- --
352.44 0.874 3.99 -1.93 -- -1.34 -- 2.09 -0.316 -- 0.3291 582 -- --
360.78 0.89 3.96 -1.77 1.24 -- -2.07 -- -0.24 16.6 -- -- -- --
372.1 0.903 3.97 -1.78 1.22 -- -- -- -0.25 16.5 -- -- -- --
366.92 0.892 3.97 -1.91 -- -1.33 -- -- -0.329 -- 0.5274 578 -- --
444.43 0.982 3.96 -- 1.07 -1.38 -- -- -0.0885 22.6 0.42 233 -- --
451.62 0.993 3.96 -1.83 -- -- -- -- -0.282 -- -- -- -- --
455.94 0.999 3.92 -- 1.25 -- -- -- -0.0517 16.5 -- -- -- --
460.22 0.999 3.92 -- -- -1.28 -- -- -0.104 -- 1.62 572 -- --
540.05 1.08 3.91 -- -- -- -- -- -0.0793 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 317.74 radiation 1.0 270 < th dose dependent rect. 5 23
3 318.54 radiation 1.0 270 < th dose dependent rect. 18 20
4 319.07 radiation 1.0 270 < th dose dependent sin 13 NA
20 322.87 radiation 1.0 270 > th dose independent rect. 15 15
23 323.35 radiation 1.0 270 < th dose independent sin 14 NA
24 323.35 temperature 15.0 270 > th dose independent rect. 4 14
27 323.57 temperature 10.0 270 > th dose dependent rect. 15 3
29 323.62 atmosphere 995.0 270 > th dose independent rect. 15 3
31 323.72 radiation 1.0 270 > th dose independent rect. 13 20
32 323.73 radiation 40.0 270 < th dose independent rect. 2 16
33 323.79 radiation 1.0 270 > th dose independent rect. 15 3
36 323.89 radiation 1.0 270 < th dose independent rect. 7 20
39 324.05 radiation 1.0 270 > th dose independent sin 14 NA
60 324.56 radiation 20.0 90 < th dose independent rect. 15 19
69 324.84 radiation 40.0 90 < th dose dependent rect. 15 20
70 324.89 temperature 15.0 10 > th dose independent rect. 20 20
71 324.91 atmosphere 1000.0 270 > th dose independent rect. 4 14
73 325.09 radiation 30.0 10 < th dose independent rect. 16 18
80 325.44 humidity 90.0 90 < th dose independent rect. 16 3
99 325.67 humidity 90.0 10 < th dose independent rect. 16 4
103 325.76 precipitation 0.1 270 < th dose independent rect. 15 3
104 325.76 precipitation 0.1 270 < th dose dependent rect. 15 3
111 325.96 temperature 20.0 90 > th dose independent rect. 16 3
113 325.97 radiation 40.0 10 < th dose dependent rect. 16 18
121 326.23 radiation 40.0 10 < th dose dependent rect. 5 15
122 326.25 temperature 20.0 90 > th dose dependent rect. 16 18
126 326.29 radiation 40.0 270 < th dose independent rect. 14 4
132 326.43 atmosphere 1005.0 270 > th dose independent rect. 9 4
137 326.57 temperature 10.0 270 > th dose independent rect. 15 3
139 326.57 atmosphere 1010.0 270 < th dose independent rect. 15 3
141 326.57 temperature 10.0 270 > th dose independent rect. 18 21
144 326.59 radiation 30.0 10 < th dose independent rect. 5 15
150 326.74 radiation 20.0 90 < th dose independent rect. 15 4
155 326.80 atmosphere 995.0 270 > th dose dependent rect. 9 4
158 326.85 humidity 50.0 270 > th dose independent rect. 18 21
159 326.87 wind 1.0 270 > th dose independent rect. 15 3
160 326.90 atmosphere 995.0 270 > th dose independent rect. 13 20
180 327.25 radiation 40.0 90 < th dose dependent rect. 16 3
181 327.25 temperature 10.0 10 > th dose dependent rect. 16 4
200 327.50 wind 9.0 270 < th dose independent rect. 18 21
214 327.58 radiation 40.0 270 < th dose independent rect. 13 21
217 327.65 atmosphere 995.0 270 > th dose independent rect. 18 20
240 327.79 temperature 20.0 10 > th dose dependent rect. 16 18
248 327.90 radiation 1.0 270 < th dose dependent rect. 18 10
250 327.92 precipitation 0.1 270 < th dose independent rect. 18 21
251 327.92 precipitation 0.1 270 < th dose dependent rect. 18 21
271 328.19 radiation 40.0 270 > th dose independent rect. 9 4
272 328.22 atmosphere 995.0 10 > th dose independent rect. 16 4
309 328.52 radiation 40.0 270 < th dose independent rect. 21 22
313 328.61 precipitation 0.1 270 < th dose independent rect. 4 14
314 328.61 precipitation 0.1 270 < th dose dependent rect. 4 14
323 328.70 radiation 40.0 90 < th dose dependent rect. 4 15
327 328.75 radiation 1.0 10 < th dose dependent rect. 20 21
328 328.78 atmosphere 1000.0 10 > th dose independent rect. 5 15
330 328.80 precipitation 0.1 270 < th dose independent rect. 13 20
331 328.80 precipitation 0.1 270 < th dose dependent rect. 13 20
333 328.81 temperature 10.0 270 > th dose dependent rect. 24 9
362 329.10 temperature 30.0 270 < th dose independent rect. 18 10
367 329.15 wind 9.0 270 < th dose independent rect. 15 3
373 329.18 wind 1.0 90 > th dose dependent rect. 16 3
385 329.35 wind 1.0 90 > th dose dependent rect. 11 4
390 329.40 humidity 60.0 270 > th dose independent rect. 18 10
399 329.48 radiation 40.0 10 < th dose dependent rect. 8 12
403 329.52 radiation 1.0 270 < th dose independent rect. 18 10
404 329.53 wind 1.0 90 > th dose independent rect. 9 7
413 329.58 atmosphere 995.0 90 > th dose dependent rect. 11 5
423 329.68 wind 1.0 270 > th dose independent rect. 9 4
426 329.68 wind 1.0 10 > th dose dependent rect. 17 3
431 329.74 humidity 90.0 90 < th dose dependent rect. 17 2
443 329.82 humidity 50.0 270 > th dose independent rect. 9 4
445 329.82 temperature 10.0 270 > th dose dependent rect. 14 19
449 329.84 precipitation 0.1 10 < th dose independent rect. 16 4
451 329.84 precipitation 0.1 10 < th dose dependent rect. 16 4
456 329.88 temperature 10.0 270 > th dose independent rect. 9 4
457 329.88 atmosphere 995.0 270 > th dose independent rect. 9 4
458 329.88 atmosphere 1015.0 270 < th dose independent rect. 9 4
459 329.88 temperature 10.0 270 > th dose independent rect. 13 20
466 329.94 wind 1.0 10 > th dose independent rect. 16 4
473 329.98 atmosphere 1015.0 90 < th dose dependent rect. 16 3
477 330.02 temperature 20.0 10 > th dose independent rect. 16 4
479 330.03 atmosphere 995.0 90 > th dose independent rect. 16 17
482 330.06 temperature 10.0 10 > th dose independent rect. 16 4
484 330.06 atmosphere 1010.0 10 < th dose independent rect. 16 4
486 330.06 radiation 20.0 10 < th dose independent rect. 16 4
487 330.06 radiation 40.0 10 < th dose independent rect. 16 4
494 330.12 atmosphere 995.0 90 > th dose dependent rect. 16 3
504 330.20 temperature 10.0 270 > th dose independent rect. 18 10
506 330.20 radiation 20.0 270 < th dose independent rect. 18 10
510 330.20 atmosphere 1015.0 270 < th dose independent rect. 4 14
518 330.23 radiation 40.0 270 < th dose dependent rect. 18 10
521 330.25 radiation 40.0 10 < th dose dependent rect. 16 4
522 330.26 precipitation 0.1 270 < th dose independent rect. 9 4
523 330.26 precipitation 0.1 270 < th dose dependent rect. 9 4
528 330.29 precipitation 0.1 10 < th dose independent rect. 20 20
530 330.29 precipitation 0.1 10 < th dose dependent rect. 20 20
540 330.36 atmosphere 995.0 270 > th dose independent rect. 18 10
583 330.71 wind 9.0 270 < th dose independent rect. 9 4
585 330.71 wind 9.0 270 < th dose independent rect. 18 10
591 330.76 radiation 20.0 10 < th dose independent rect. 8 12
606 330.77 atmosphere 995.0 90 > th dose dependent rect. 9 7
619 330.81 precipitation 0.1 90 < th dose independent rect. 16 17
621 330.81 precipitation 0.1 90 < th dose dependent rect. 16 17
637 330.85 radiation 1.0 10 < th dose independent rect. 20 21
657 330.92 temperature 10.0 90 > th dose dependent rect. 16 17
710 331.16 radiation 1.0 90 < th dose independent rect. 19 21
722 331.18 radiation 20.0 10 > th dose dependent rect. 12 22
726 331.21 humidity 50.0 90 > th dose independent rect. 9 7
728 331.22 precipitation 0.1 270 < th dose independent rect. 18 10
729 331.22 precipitation 0.1 270 < th dose dependent rect. 18 10
786 331.49 wind 1.0 43200 > th dose independent rect. 7 1
804 331.56 radiation 40.0 270 > th dose independent sin 7 NA
816 331.62 atmosphere 995.0 10 > th dose independent rect. 20 20
818 331.63 humidity 90.0 10 < th dose independent rect. 4 16
829 331.67 radiation 1.0 10 < th dose dependent rect. 20 18
848 331.77 atmosphere 1015.0 10 < th dose dependent rect. 16 4
856 331.82 temperature 10.0 90 > th dose independent rect. 9 7
857 331.82 atmosphere 1015.0 90 < th dose independent rect. 9 7
858 331.82 temperature 10.0 90 > th dose independent rect. 16 17
885 331.95 humidity 50.0 90 > th dose independent rect. 16 3
888 331.95 wind 1.0 90 > th dose independent rect. 19 21
892 331.97 temperature 15.0 10 > th dose independent rect. 20 9
894 331.98 precipitation 0.1 90 < th dose independent rect. 9 7
895 331.98 precipitation 0.1 90 < th dose dependent rect. 9 7
900 332.00 wind 1.0 43200 < th dose independent rect. 7 1
904 332.02 temperature 20.0 270 > th dose dependent rect. 9 4
924 332.12 radiation 1.0 270 < th dose dependent no NA NA
945 332.21 humidity 50.0 10 > th dose independent rect. 17 3
950 332.21 humidity 50.0 270 > th dose independent rect. 9 16
953 332.22 temperature 25.0 10 < th dose independent rect. 22 18
954 332.23 temperature 10.0 270 > th dose dependent rect. 9 4
956 332.24 radiation 30.0 270 < th dose independent rect. 1 9
962 332.26 radiation 40.0 270 > th dose independent rect. 11 2