Os04g0534400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Major sperm protein domain containing protein.
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Os04g0534400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Major sperm protein domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.7 | 0.209 | 9.2 | -0.426 | 0.539 | 0.681 | -0.717 | -0.945 | -0.177 | 17.5 | 8.966 | 5497 | -- | -- |
| 20.31 | 0.21 | 9.18 | -0.261 | 0.526 | 0.752 | -0.673 | -- | -0.182 | 17.5 | 9.217 | 7998 | -- | -- |
| 20.62 | 0.212 | 9.21 | -0.457 | 0.517 | 0.673 | -- | -0.95 | -0.23 | 17.8 | 12.96 | 7750 | -- | -- |
| 21.39 | 0.215 | 9.18 | -0.254 | 0.518 | 0.75 | -- | -- | -0.181 | 17.7 | 7.687 | 7887 | -- | -- |
| 32.02 | 0.265 | 9.18 | -0.253 | -- | 0.879 | -- | -1.53 | -0.155 | -- | 14.25 | 7760 | -- | -- |
| 29.44 | 0.254 | 9.13 | 0.126 | 0.522 | -- | -0.661 | -- | 0.0312 | 17.7 | -- | -- | -- | -- |
| 30.46 | 0.258 | 9.13 | 0.129 | 0.519 | -- | -- | -- | 0.0282 | 17.9 | -- | -- | -- | -- |
| 34.02 | 0.273 | 9.15 | -0.0413 | -- | 0.85 | -- | -- | -0.097 | -- | 12.8 | 6339 | -- | -- |
| 22.53 | 0.221 | 9.16 | -- | 0.539 | 0.599 | -- | -- | -0.104 | 17.7 | 10.95 | 6923 | -- | -- |
| 44.45 | 0.312 | 9.12 | 0.113 | -- | -- | -- | -- | 0.0163 | -- | -- | -- | -- | -- |
| 30.9 | 0.26 | 9.14 | -- | 0.518 | -- | -- | -- | 0.0139 | 18 | -- | -- | -- | -- |
| 34.06 | 0.273 | 9.15 | -- | -- | 0.837 | -- | -- | -0.0909 | -- | 12.8 | 6339 | -- | -- |
| 44.79 | 0.312 | 9.13 | -- | -- | -- | -- | -- | 0.00369 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.33 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 15 |
| 3 | 19.33 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 17 |
| 4 | 19.33 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 20 |
| 14 | 19.35 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 22 | 19.36 | wind | 5 | 43200 | < th | dose independent | rect. | 7 | 16 |
| 23 | 19.36 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 16 |
| 24 | 19.36 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 17 |
| 31 | 19.36 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 17 |
| 46 | 19.37 | wind | 5 | 43200 | > th | dose dependent | rect. | 7 | 15 |
| 47 | 19.37 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 17 |
| 72 | 19.39 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 128 | 19.41 | wind | 5 | 43200 | > th | dose dependent | sin | 21 | NA |
| 138 | 19.42 | wind | 5 | 43200 | > th | dose independent | sin | 23 | NA |
| 176 | 19.43 | wind | 5 | 43200 | > th | dose dependent | sin | 17 | NA |
| 214 | 19.45 | wind | 5 | 43200 | < th | dose independent | sin | 0 | NA |
| 242 | 19.46 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 12 |
| 280 | 19.47 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 291 | 19.47 | wind | 7 | 43200 | < th | dose independent | rect. | 23 | 22 |
| 307 | 19.48 | wind | 5 | 43200 | > th | dose independent | sin | 17 | NA |
| 308 | 19.48 | radiation | 30 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 309 | 19.48 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 8 |
| 334 | 19.48 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 350 | 19.49 | wind | 5 | 43200 | < th | dose independent | rect. | 7 | 9 |
| 361 | 19.49 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 20 |
| 381 | 19.50 | wind | 5 | 43200 | > th | dose independent | no | NA | NA |
| 404 | 19.50 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 410 | 19.50 | wind | 5 | 43200 | > th | dose dependent | no | NA | NA |
| 419 | 19.51 | wind | 7 | 43200 | < th | dose independent | no | NA | NA |
| 431 | 19.51 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 20 |
| 443 | 19.51 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 23 |
| 448 | 19.51 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 23 |
| 450 | 19.51 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 23 |
| 474 | 19.52 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 23 |
| 491 | 19.52 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 23 |
| 495 | 19.53 | radiation | 30 | 14400 | < th | dose independent | rect. | 20 | 12 |
| 506 | 19.53 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 21 |
| 622 | 19.56 | wind | 5 | 43200 | < th | dose independent | sin | 17 | NA |
| 728 | 19.59 | radiation | 10 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 861 | 19.62 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 862 | 19.62 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 6 |
| 964 | 19.66 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 8 |