Os04g0369000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Major sperm protein domain containing protein.
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Os04g0369000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Major sperm protein domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 380.76 | 0.917 | 10.7 | 5.65 | 0.755 | -3.39 | 0.897 | -8.53 | -4.29 | 22.4 | 0.4178 | 4325 | 17.9 | 11.9 |
| 467.39 | 1.01 | 10.7 | 5.62 | 0.714 | -3.35 | 0.823 | -- | -4.22 | 22.4 | 3.662 | 5760 | 17.8 | 11.9 |
| 382.38 | 0.911 | 10.7 | 5.63 | 0.652 | -3.42 | -- | -8.49 | -4.28 | 22.1 | 0.3814 | 4311 | 17.8 | 11.8 |
| 452.17 | 0.99 | 10.7 | 4.88 | 0.448 | -3.44 | -- | -- | -4.14 | 21.9 | 3.318 | 5750 | 17.9 | 11.9 |
| 391.97 | 0.922 | 10.7 | 5.65 | -- | -3.44 | -- | -8.48 | -4.28 | -- | 0.4872 | 4282 | 17.8 | 11.8 |
| 718.78 | 1.26 | 10.6 | 3.2 | 0.788 | -- | 1.12 | -- | -4.16 | 23.2 | -- | -- | -- | -- |
| 723.85 | 1.26 | 10.6 | 3.16 | 0.789 | -- | -- | -- | -4.16 | 22.9 | -- | -- | -- | -- |
| 456.53 | 0.995 | 10.6 | 4.79 | -- | -3.52 | -- | -- | -4.35 | -- | 2.742 | 5728 | 17.8 | 12 |
| 409.27 | 0.942 | 10.8 | -- | 0.665 | -3.94 | -- | -- | -5.62 | 23.2 | 0.3356 | 47520 | 18.3 | 12.2 |
| 762.44 | 1.29 | 10.6 | 3.18 | -- | -- | -- | -- | -4.15 | -- | -- | -- | -- | -- |
| 987.22 | 1.47 | 10.7 | -- | 0.816 | -- | -- | -- | -4.51 | 23.1 | -- | -- | -- | -- |
| 410.51 | 0.944 | 10.9 | -- | -- | -3.96 | -- | -- | -5.7 | -- | 0.3259 | 44245 | 18.3 | 12.4 |
| 1028.83 | 1.5 | 10.7 | -- | -- | -- | -- | -- | -4.51 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 351.49 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 2 | 351.65 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 4 | 355.36 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 7 | 355.47 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 8 | 355.49 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 14 | 355.94 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 34 | 359.72 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 22 |
| 35 | 360.52 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 18 |
| 39 | 362.09 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 22 |
| 44 | 363.21 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 19 |
| 49 | 364.18 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 8 |
| 50 | 364.29 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 10 |
| 72 | 365.50 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 6 |
| 79 | 365.82 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 4 |
| 111 | 367.73 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 18 |
| 112 | 367.86 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 22 |
| 117 | 368.46 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 119 | 368.57 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 159 | 370.35 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 165 | 370.54 | radiation | 1 | 14400 | > th | dose independent | rect. | 6 | 23 |
| 175 | 370.90 | radiation | 1 | 14400 | < th | dose dependent | sin | 10 | NA |
| 178 | 370.94 | radiation | 1 | 14400 | < th | dose dependent | rect. | 15 | 21 |
| 179 | 370.99 | radiation | 1 | 14400 | > th | dose independent | rect. | 6 | 13 |
| 216 | 371.44 | radiation | 1 | 14400 | > th | dose independent | sin | 2 | NA |
| 217 | 371.44 | radiation | 1 | 14400 | < th | dose independent | rect. | 1 | 15 |
| 218 | 371.44 | radiation | 1 | 14400 | < th | dose independent | rect. | 23 | 17 |
| 221 | 371.45 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 12 |
| 235 | 371.48 | radiation | 1 | 14400 | < th | dose independent | rect. | 3 | 13 |
| 276 | 371.98 | radiation | 1 | 14400 | < th | dose independent | sin | 3 | NA |
| 283 | 372.01 | radiation | 1 | 14400 | < th | dose dependent | rect. | 23 | 13 |
| 321 | 372.27 | radiation | 1 | 14400 | < th | dose dependent | rect. | 9 | 23 |
| 323 | 372.29 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 21 |
| 325 | 372.30 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 23 |
| 328 | 372.31 | radiation | 1 | 14400 | > th | dose independent | rect. | 14 | 22 |
| 329 | 372.31 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 9 |
| 331 | 372.32 | radiation | 1 | 14400 | < th | dose dependent | rect. | 23 | 22 |
| 332 | 372.32 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 23 |
| 347 | 372.34 | radiation | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 357 | 372.36 | radiation | 1 | 14400 | < th | dose dependent | rect. | 20 | 23 |
| 382 | 372.47 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 16 |
| 392 | 372.50 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 18 |
| 424 | 372.59 | radiation | 1 | 14400 | < th | dose dependent | rect. | 23 | 9 |
| 461 | 372.78 | radiation | 1 | 14400 | > th | dose independent | no | NA | NA |
| 462 | 372.78 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 15 |
| 514 | 372.84 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 23 |
| 529 | 372.91 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 5 |
| 606 | 373.28 | radiation | 1 | 14400 | > th | dose independent | rect. | 11 | 23 |
| 614 | 373.40 | atmosphere | 1005 | 43200 | > th | dose dependent | sin | 15 | NA |
| 665 | 373.73 | radiation | 1 | 14400 | > th | dose independent | rect. | 9 | 23 |
| 706 | 374.32 | radiation | 1 | 14400 | > th | dose independent | sin | 10 | NA |
| 772 | 374.84 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 23 |
| 823 | 375.25 | radiation | 1 | 14400 | < th | dose independent | rect. | 14 | 22 |
| 824 | 375.26 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 20 |
| 832 | 375.31 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 18 |
| 834 | 375.32 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 15 |
| 855 | 375.60 | radiation | 1 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 861 | 375.65 | radiation | 1 | 14400 | < th | dose independent | rect. | 3 | 23 |
| 862 | 375.66 | radiation | 1 | 14400 | < th | dose independent | rect. | 1 | 20 |
| 864 | 375.66 | radiation | 1 | 14400 | < th | dose independent | rect. | 23 | 21 |
| 866 | 375.66 | radiation | 1 | 14400 | < th | dose independent | rect. | 1 | 23 |
| 869 | 375.67 | radiation | 1 | 14400 | < th | dose independent | no | NA | NA |
| 878 | 375.68 | radiation | 1 | 14400 | < th | dose independent | rect. | 3 | 18 |
| 991 | 376.18 | radiation | 1 | 14400 | < th | dose dependent | rect. | 15 | 11 |
| 992 | 376.19 | radiation | 1 | 14400 | < th | dose independent | rect. | 11 | 23 |