BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0369000 Os04g0369000|AK119916
(137 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G45140.1 | chr2:18611029-18612971 FORWARD LENGTH=240 89 6e-19
AT3G60600.1 | chr3:22400537-22402408 FORWARD LENGTH=257 88 2e-18
AT1G51270.3 | chr1:19007577-19011225 FORWARD LENGTH=638 87 3e-18
AT4G00170.1 | chr4:70732-72085 REVERSE LENGTH=240 73 4e-14
AT2G23830.1 | chr2:10143646-10144511 FORWARD LENGTH=150 70 4e-13
AT5G47180.1 | chr5:19161384-19163265 REVERSE LENGTH=221 62 1e-10
AT1G08820.1 | chr1:2821810-2824412 REVERSE LENGTH=387 57 3e-09
>AT2G45140.1 | chr2:18611029-18612971 FORWARD LENGTH=240
Length = 239
Score = 89.4 bits (220), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 8 SERLVIDPLEVRFPFEKDRDVSCVLQLTNRSADRVAFAVQ-VDESKYRAVPDRGVVQPRS 66
+E L IDP++++FPFE + +SC L L N++ + VAF V+ + KY P+ GVV PRS
Sbjct: 3 NELLTIDPVDLQFPFELKKQISCSLYLGNKTDNYVAFKVKTTNPKKYCVRPNTGVVHPRS 62
Query: 67 RRYIVATSRAQASAPTNLQRDDSFLLRSKRVEGSA--DDDFAEDFEKLMGKAVDGETMRL 124
++ T +AQ AP +LQ D FLL+ A D E F K G V E +L
Sbjct: 63 SSEVLVTMQAQKEAPADLQCKDKFLLQCVVASPGATPKDVTHEMFSKEAGHRV--EETKL 120
Query: 125 PVVYIALPLPPS 136
VVY+A P PPS
Sbjct: 121 RVVYVAPPRPPS 132
>AT3G60600.1 | chr3:22400537-22402408 FORWARD LENGTH=257
Length = 256
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 77/132 (58%), Gaps = 5/132 (3%)
Query: 8 SERLVIDPLEVRFPFEKDRDVSCVLQLTNRSADRVAFAVQ-VDESKYRAVPDRGVVQPRS 66
SE L ++PL+++FPFE + +SC L LTN++ + VAF V+ + KY P+ GVV PRS
Sbjct: 20 SELLTVEPLDLQFPFELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGVVLPRS 79
Query: 67 RRYIVATSRAQASAPTNLQRDDSFLLRSKRVEG--SADDDFAEDFEKLMGKAVDGETMRL 124
++ T +AQ AP+++Q D FLL+ +A + E F K G V E +L
Sbjct: 80 TCEVLVTMQAQKEAPSDMQCKDKFLLQGVIASPGVTAKEVTPEMFSKEAGHRV--EETKL 137
Query: 125 PVVYIALPLPPS 136
V Y+A P PPS
Sbjct: 138 RVTYVAPPRPPS 149
>AT1G51270.3 | chr1:19007577-19011225 FORWARD LENGTH=638
Length = 637
Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 74/131 (56%), Gaps = 5/131 (3%)
Query: 9 ERLVIDPLEVRFPFEKDRDVSCVLQLTNRSADRVAF-AVQVDESKYRAVPDRGVVQPRSR 67
E L+IDP++V+FP E ++ VSC L LTN++ + VAF A + KY P+ GVV PRS
Sbjct: 175 ELLIIDPVDVQFPIELNKKVSCSLNLTNKTENYVAFKAKTTNAKKYYVRPNVGVVLPRSS 234
Query: 68 RYIVATSRAQASAPTNLQRDDSFLLRSKRV--EGSADDDFAEDFEKLMGKAVDGETMRLP 125
++ +A AP ++Q D L + K V E +A D +E F K G E RL
Sbjct: 235 CEVLVIMQALKEAPADMQCRDKLLFQCKVVEPETTAKDVTSEMFSKEAGHP--AEETRLK 292
Query: 126 VVYIALPLPPS 136
V+Y+ P PPS
Sbjct: 293 VMYVTPPQPPS 303
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 71/131 (54%), Gaps = 5/131 (3%)
Query: 9 ERLVIDPLEVRFPFEKDRDVSCVLQLTNRSADRVAFAVQVDESKYRAV-PDRGVVQPRSR 67
E L D +++RFP E ++ SC L LTN++ + VAF Q + K V P GVV PRS
Sbjct: 5 ELLTFDHVDIRFPIELNKQGSCSLNLTNKTDNYVAFKAQTTKPKMYCVKPSVGVVLPRSS 64
Query: 68 RYIVATSRAQASAPTNLQRDDSFLLRSKRVE-GSADDDF-AEDFEKLMGKAVDGETMRLP 125
++ +A AP + Q D L + K VE G+ D + +E F K G V+ ET+
Sbjct: 65 CEVLVVMQALKEAPADRQCKDKLLFQCKVVEPGTMDKEVTSEMFSKEAGHRVE-ETI-FK 122
Query: 126 VVYIALPLPPS 136
++Y+A P P S
Sbjct: 123 IIYVAPPQPQS 133
>AT4G00170.1 | chr4:70732-72085 REVERSE LENGTH=240
Length = 239
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 72/128 (56%), Gaps = 7/128 (5%)
Query: 13 IDPLEVRFPFEKDRDVSCVLQLTNRSADR-VAFAVQ-VDESKYRAVPDRGVVQPRSRRYI 70
I P E++FPFE + SC +QLTN++ + VAF V+ + KY P+ GVV P +
Sbjct: 9 IHPTELKFPFELKKQSSCSMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVVLPGDSCNV 68
Query: 71 VATSRAQASAPTNLQRDDSFLLRSKRV-EGSADDD-FAEDFEKLMGKAVDGETMRLPVVY 128
T +AQ AP ++Q D FL+++ V +G+ + AE F K G+ + E +L VVY
Sbjct: 69 TVTMQAQKEAPLDMQCKDKFLVQTVVVSDGTTSKEVLAEMFNKEAGRVI--EDFKLRVVY 126
Query: 129 IALPLPPS 136
I PPS
Sbjct: 127 IPAN-PPS 133
>AT2G23830.1 | chr2:10143646-10144511 FORWARD LENGTH=150
Length = 149
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 70/123 (56%), Gaps = 3/123 (2%)
Query: 8 SERLVIDPLEVRFPFEKDRDVSCVLQLTNRSADRVAFAVQ-VDESKYRAVPDRGVVQPRS 66
+E L I+P+ ++FPFE + +SC L LTN++ + VAF V+ + + Y P+ G++ P+S
Sbjct: 4 NELLEIEPMYLQFPFELKKQMSCSLYLTNKTDNNVAFKVKTTNRNNYCVRPNYGLILPKS 63
Query: 67 RRYIVATSRAQASAPTNLQRDDSFLLRSKRVE--GSADDDFAEDFEKLMGKAVDGETMRL 124
++ T +AQ P+++Q + F+++S +A + E F K G V+ +R+
Sbjct: 64 TCKVLVTMQAQKEVPSDMQSFEKFMIQSVLASPGVTAKEVTREMFSKESGHVVEETKLRV 123
Query: 125 PVV 127
V
Sbjct: 124 TYV 126
>AT5G47180.1 | chr5:19161384-19163265 REVERSE LENGTH=221
Length = 220
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 67/131 (51%), Gaps = 6/131 (4%)
Query: 4 AGCKSERLV-IDPLEVRFPFEKDRDVSCVLQLTNRSADRVAFAVQVDE-SKYRAVPDRGV 61
G +L+ I P E++F FE ++ C L++ N++ + VAF V+ KY P+ GV
Sbjct: 2 TGVGENQLISIQPDELKFLFELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTGV 61
Query: 62 VQPRSRRYIVATSRAQASAPTNLQRDDSFLLRSKRVEGSAD-DDFAED-FEKLMGKAVDG 119
+QP I T +AQ P ++Q D FLL+S V D D+ +D F K GK +
Sbjct: 62 IQPWDSCIIRVTLQAQREYPPDMQCKDKFLLQSTIVPPHTDVDELPQDTFTKDSGKTLT- 120
Query: 120 ETMRLPVVYIA 130
+L V YI
Sbjct: 121 -ECKLKVSYIT 130
>AT1G08820.1 | chr1:2821810-2824412 REVERSE LENGTH=387
Length = 386
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 9/129 (6%)
Query: 11 LVIDPLEVRFPFEKDRDVSCVLQLTNRSADRVAFAVQVDE-SKYRAVPDRGVVQPRSRRY 69
L I P ++F + + SCV+QLTN + VAF V+ KY P+ GVV P+S
Sbjct: 6 LDIQPRTLQFAVDLKKQTSCVVQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAPKSTCE 65
Query: 70 IVATSRAQASAPTNLQRDDSFLLRSKRV--EGSADDDFAEDFEKLMGKAVDGETMRLPVV 127
+A P ++ D FL++S V E + +D A F K GK ++ +R+ +V
Sbjct: 66 FTVIMQAFKEPPPDMVCKDKFLIQSTAVSAETTDEDITASMFSKAEGKHIEENKLRVTLV 125
Query: 128 YIALPLPPS 136
PPS
Sbjct: 126 ------PPS 128
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.133 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,799,823
Number of extensions: 99911
Number of successful extensions: 286
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 276
Number of HSP's successfully gapped: 8
Length of query: 137
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 49
Effective length of database: 8,693,961
Effective search space: 426004089
Effective search space used: 426004089
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 106 (45.4 bits)