Os01g0936800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : PapD-like domain containing protein.
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Os01g0936800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : PapD-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.46 | 0.28 | 12.4 | 0.352 | 1.03 | -0.435 | 0.367 | 0.766 | 0.223 | 6.17 | 1.934 | 10 | -- | -- |
| 38.92 | 0.291 | 12.4 | 0.376 | 1.03 | -0.436 | 0.189 | -- | 0.219 | 6.12 | 2.982 | 10 | -- | -- |
| 35.78 | 0.279 | 12.4 | 0.357 | 1.04 | -0.435 | -- | 0.718 | 0.222 | 6.16 | 2.02 | 10 | -- | -- |
| 38.94 | 0.291 | 12.4 | 0.37 | 1.04 | -0.415 | -- | -- | 0.222 | 6.26 | 2.77 | 10 | -- | -- |
| 90.24 | 0.445 | 12.4 | 0.378 | -- | -0.519 | -- | 0.641 | 0.242 | -- | 1.92 | 10 | -- | -- |
| 41.96 | 0.304 | 12.3 | 0.4 | 1.22 | -- | -0.431 | -- | 0.24 | 7.86 | -- | -- | -- | -- |
| 42.48 | 0.305 | 12.3 | 0.388 | 1.22 | -- | -- | -- | 0.24 | 7.81 | -- | -- | -- | -- |
| 92.87 | 0.451 | 12.4 | 0.393 | -- | -0.524 | -- | -- | 0.241 | -- | 2.77 | 10 | -- | -- |
| 42.51 | 0.304 | 12.4 | -- | 1.04 | -0.426 | -- | -- | 0.182 | 6.19 | 2.259 | 10 | -- | -- |
| 122.98 | 0.518 | 12.4 | 0.402 | -- | -- | -- | -- | 0.257 | -- | -- | -- | -- | -- |
| 46.45 | 0.319 | 12.3 | -- | 1.22 | -- | -- | -- | 0.197 | 7.79 | -- | -- | -- | -- |
| 96.37 | 0.457 | 12.4 | -- | -- | -0.535 | -- | -- | 0.198 | -- | 2.52 | 2 | -- | -- |
| 127.25 | 0.527 | 12.4 | -- | -- | -- | -- | -- | 0.212 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.01 | temperature | 30.0 | 30 | > th | dose dependent | rect. | 9 | 1 |
| 61 | 33.05 | temperature | 30.0 | 90 | > th | dose independent | rect. | 8 | 1 |
| 174 | 33.97 | temperature | 25.0 | 30 | < th | dose independent | rect. | 14 | 14 |
| 196 | 34.05 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 198 | 34.09 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 23 | 21 |
| 200 | 34.13 | radiation | 1.0 | 10 | < th | dose independent | rect. | 23 | 21 |
| 204 | 34.18 | radiation | 1.0 | 10 | < th | dose independent | rect. | 21 | 23 |
| 222 | 34.23 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 266 | 35.11 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 14 | 15 |
| 269 | 35.16 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 18 | 5 |
| 271 | 35.18 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 20 | 12 |
| 273 | 35.23 | radiation | 1.0 | 10 | < th | dose independent | rect. | 6 | 23 |
| 274 | 35.28 | radiation | 1.0 | 10 | > th | dose independent | rect. | 7 | 23 |
| 281 | 35.37 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 11 | 18 |
| 283 | 35.40 | radiation | 1.0 | 10 | < th | dose independent | rect. | 11 | 18 |
| 287 | 35.41 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 9 | 2 |
| 291 | 35.42 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 6 | 23 |
| 293 | 35.43 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 13 | 16 |
| 298 | 35.48 | atmosphere | 1015.0 | 720 | < th | dose dependent | rect. | 8 | 1 |
| 300 | 35.50 | radiation | 1.0 | 10 | < th | dose independent | rect. | 13 | 16 |
| 306 | 35.55 | radiation | 1.0 | 10 | > th | dose independent | no | NA | NA |
| 307 | 35.55 | radiation | 1.0 | 10 | < th | dose independent | no | NA | NA |
| 308 | 35.55 | radiation | 1.0 | 10 | > th | dose independent | rect. | 5 | 14 |
| 373 | 35.55 | radiation | 1.0 | 10 | < th | dose independent | rect. | 13 | 23 |
| 374 | 35.55 | radiation | 1.0 | 10 | < th | dose independent | rect. | 15 | 23 |
| 403 | 35.61 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 8 | 12 |
| 412 | 35.63 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 15 | 3 |
| 439 | 35.65 | radiation | 1.0 | 10 | < th | dose independent | rect. | 13 | 19 |
| 451 | 35.65 | radiation | 1.0 | 10 | < th | dose dependent | no | NA | NA |
| 460 | 35.65 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 461 | 35.65 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 479 | 35.67 | radiation | 1.0 | 10 | < th | dose independent | rect. | 17 | 23 |
| 493 | 35.72 | radiation | 1.0 | 10 | < th | dose independent | rect. | 1 | 23 |
| 497 | 35.73 | radiation | 1.0 | 10 | > th | dose independent | rect. | 17 | 23 |
| 501 | 35.74 | radiation | 1.0 | 10 | > th | dose independent | rect. | 11 | 23 |
| 503 | 35.74 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 504 | 35.75 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 3 | 11 |
| 515 | 35.76 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 5 | 11 |
| 523 | 35.77 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 525 | 35.78 | radiation | 1.0 | 10 | < th | dose independent | rect. | 15 | 14 |
| 531 | 35.79 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 1 |
| 532 | 35.79 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 10 |
| 538 | 35.80 | radiation | 30.0 | 720 | < th | dose dependent | rect. | 15 | 12 |
| 547 | 35.82 | radiation | 1.0 | 10 | < th | dose independent | rect. | 19 | 23 |
| 549 | 35.83 | radiation | 1.0 | 10 | < th | dose independent | rect. | 15 | 21 |
| 554 | 35.83 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 16 | 9 |
| 558 | 35.85 | radiation | 30.0 | 90 | < th | dose independent | rect. | 20 | 15 |
| 565 | 35.86 | wind | 9.0 | 720 | < th | dose dependent | rect. | 8 | 1 |
| 579 | 35.92 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 9 | 3 |
| 582 | 35.92 | radiation | 1.0 | 10 | < th | dose independent | rect. | 15 | 17 |
| 594 | 35.92 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 596 | 35.93 | humidity | 70.0 | 90 | > th | dose independent | rect. | 20 | 15 |
| 599 | 35.93 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 15 | 21 |
| 603 | 35.94 | radiation | 1.0 | 10 | > th | dose independent | sin | 1 | NA |
| 606 | 35.94 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 23 | 19 |
| 615 | 35.98 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 3 | 5 |
| 618 | 35.98 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 20 | 15 |
| 626 | 36.01 | radiation | 1.0 | 10 | < th | dose independent | rect. | 23 | 19 |
| 629 | 36.02 | wind | 5.0 | 720 | < th | dose independent | rect. | 8 | 1 |
| 654 | 36.08 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 657 | 36.09 | temperature | 30.0 | 720 | < th | dose independent | rect. | 16 | 4 |
| 660 | 36.09 | radiation | 40.0 | 10 | < th | dose independent | rect. | 20 | 14 |
| 705 | 36.15 | temperature | 15.0 | 720 | > th | dose independent | rect. | 20 | 1 |
| 707 | 36.15 | wind | 9.0 | 30 | < th | dose independent | rect. | 8 | 12 |
| 708 | 36.15 | temperature | 15.0 | 30 | > th | dose independent | rect. | 20 | 12 |
| 729 | 36.20 | temperature | 30.0 | 10 | < th | dose independent | rect. | 20 | 14 |
| 737 | 36.21 | temperature | 25.0 | 30 | < th | dose independent | sin | 14 | NA |
| 798 | 36.22 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 20 | 12 |
| 811 | 36.22 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 20 | 12 |
| 837 | 36.25 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 8 | 1 |
| 841 | 36.25 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 8 | 1 |
| 843 | 36.25 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 18 | 16 |
| 863 | 36.27 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 20 | 1 |
| 893 | 36.29 | temperature | 10.0 | 720 | > th | dose independent | rect. | 8 | 1 |
| 895 | 36.29 | humidity | 50.0 | 720 | > th | dose independent | rect. | 8 | 1 |
| 896 | 36.29 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 8 | 1 |
| 897 | 36.29 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 8 | 1 |
| 898 | 36.29 | wind | 1.0 | 30 | > th | dose independent | rect. | 8 | 12 |
| 899 | 36.29 | radiation | 1.0 | 720 | < th | dose independent | rect. | 13 | 14 |
| 900 | 36.29 | temperature | 10.0 | 720 | > th | dose independent | rect. | 9 | 23 |
| 903 | 36.29 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 12 |
| 905 | 36.30 | humidity | 90.0 | 720 | < th | dose independent | rect. | 8 | 1 |
| 906 | 36.30 | radiation | 1.0 | 720 | > th | dose independent | rect. | 8 | 1 |
| 908 | 36.30 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 12 |
| 911 | 36.30 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 12 |
| 914 | 36.30 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 21 | 12 |
| 916 | 36.30 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 12 |
| 917 | 36.30 | radiation | 1.0 | 720 | < th | dose independent | rect. | 11 | 16 |
| 939 | 36.32 | wind | 9.0 | 720 | < th | dose independent | rect. | 20 | 1 |
| 941 | 36.32 | temperature | 30.0 | 720 | < th | dose independent | rect. | 20 | 1 |
| 942 | 36.32 | humidity | 50.0 | 720 | > th | dose independent | rect. | 20 | 1 |
| 945 | 36.32 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 20 | 1 |
| 946 | 36.32 | radiation | 1.0 | 720 | < th | dose independent | rect. | 20 | 1 |
| 952 | 36.32 | temperature | 10.0 | 30 | > th | dose independent | rect. | 8 | 12 |
| 955 | 36.32 | temperature | 30.0 | 30 | < th | dose independent | rect. | 20 | 12 |
| 956 | 36.32 | humidity | 50.0 | 30 | > th | dose independent | rect. | 20 | 12 |
| 958 | 36.32 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 20 | 12 |
| 959 | 36.32 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 8 | 12 |
| 960 | 36.32 | radiation | 1.0 | 720 | < th | dose independent | rect. | 15 | 12 |
| 962 | 36.32 | temperature | 10.0 | 720 | > th | dose independent | rect. | 21 | 23 |
| 964 | 36.32 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 969 | 36.32 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 20 | 12 |
| 973 | 36.34 | wind | 1.0 | 720 | > th | dose independent | rect. | 20 | 1 |
| 974 | 36.34 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 9 | 1 |
| 981 | 36.34 | wind | 9.0 | 30 | < th | dose independent | rect. | 20 | 12 |
| 986 | 36.35 | wind | 1.0 | 720 | > th | dose independent | rect. | 18 | 5 |
| 989 | 36.36 | wind | 7.0 | 720 | < th | dose independent | rect. | 6 | 5 |
| 1000 | 36.37 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 20 | 12 |