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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0661900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Vesicle-associated membrane protein-associated protein B/C (VAMP- associated protein B/C) (VAMP-B/VAMP-C) (VAP-B/VAP-C). Splice isoform 2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.83 (0.0343) R2 : 0.897
β1 : -2.32 (0.126) R2dD : 0.0797 R2D : 0.116
β2 : 4.78 (0.0936) R2dC : 0.723 R2C : 0.146
β3 : -5.4 (0.112) R2dE : 0.648 R2E : 0.0805
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.129 (0.0736) R2dN8 : 0.00096 R2N8 : -0.000444
σ : 0.641
deviance : 189.67
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C
peak time of C : 14.6
E
wheather : temperature
threshold : 13.58
memory length : 290
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.97
open length of G : 8.7

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
187.55 0.643 6.86 -2.41 4.75 -5.34 0.982 -1.64 0.0942 14.8 14.46 274 3.02 8.92
190.94 0.644 6.85 -2.33 4.72 -5.25 0.844 -- 0.111 14.8 13.97 279 3 8.87
188.2 0.639 6.84 -2.38 4.8 -5.41 -- -1.04 0.0991 14.6 13.52 285 3.01 8.75
189.67 0.641 6.83 -2.32 4.78 -5.4 -- -- 0.129 14.6 13.58 290 2.97 8.7
660.02 1.2 7.01 -2.62 -- -4.86 -- -0.542 -0.434 -- 11.56 226 0.0096 10.3
419.98 0.961 7.01 -2.79 4.79 -- 1.53 -- -0.197 17.9 -- -- -- --
425.6 0.966 7.01 -2.8 4.8 -- -- -- -0.19 17.9 -- -- -- --
631.99 1.17 6.83 -2.41 -- -4.86 -- -- 0.181 -- 12.6 219 0.0166 10.2
323.31 0.837 6.75 -- 4.85 -6.01 -- -- 0.467 14.3 14.77 297 2.66 8.98
1620.03 1.88 6.93 -2.95 -- -- -- -- -0.302 -- -- -- -- --
632.96 1.18 6.94 -- 4.84 -- -- -- 0.122 17.8 -- -- -- --
782.36 1.3 6.84 -- -- -5.19 -- -- 0.449 -- 15.61 258 0.0167 9.8
1849.71 2.01 6.86 -- -- -- -- -- 0.0253 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 189.34 temperature 15.0 270 > th dose dependent rect. 3 9
14 217.58 temperature 20.0 90 > th dose dependent rect. 19 18
18 220.91 temperature 10.0 270 > th dose dependent rect. 18 17
22 223.92 temperature 20.0 10 > th dose dependent rect. 4 10
36 227.44 temperature 20.0 10 > th dose dependent rect. 20 18
61 236.33 temperature 30.0 90 < th dose dependent rect. 1 16
66 237.27 temperature 20.0 10 > th dose dependent sin 4 NA
71 239.00 temperature 20.0 10 > th dose dependent rect. 7 7
76 239.76 temperature 10.0 270 > th dose dependent rect. 16 21
92 241.58 temperature 10.0 10 > th dose dependent sin 4 NA
130 246.19 temperature 30.0 10 < th dose dependent sin 4 NA
159 249.97 temperature 20.0 90 > th dose dependent rect. 23 14
180 252.16 temperature 30.0 10 < th dose dependent rect. 24 18
235 257.05 temperature 25.0 270 > th dose independent rect. 6 5
243 257.66 temperature 25.0 90 > th dose independent rect. 19 18
253 258.23 temperature 20.0 270 > th dose independent rect. 4 8
407 268.73 temperature 25.0 10 > th dose independent rect. 7 7
623 279.12 temperature 10.0 270 > th dose dependent rect. 6 16
730 283.42 atmosphere 995.0 270 > th dose dependent rect. 11 6
775 284.88 temperature 25.0 90 < th dose independent rect. 1 16
801 285.89 temperature 10.0 10 > th dose dependent rect. 8 16
881 288.90 temperature 25.0 30 < th dose independent sin 4 NA
911 289.68 wind 7.0 270 < th dose independent rect. 17 18
942 290.59 temperature 25.0 30 > th dose independent sin 4 NA
968 291.35 precipitation 0.1 270 < th dose independent rect. 17 18
970 291.35 precipitation 0.1 270 < th dose dependent rect. 17 18