BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0661900 Os02g0661900|AK061447
(106 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G00170.1 | chr4:70732-72085 REVERSE LENGTH=240 136 2e-33
AT3G60600.1 | chr3:22400537-22402408 FORWARD LENGTH=257 127 9e-31
AT2G45140.1 | chr2:18611029-18612971 FORWARD LENGTH=240 126 3e-30
AT1G51270.3 | chr1:19007577-19011225 FORWARD LENGTH=638 114 1e-26
AT2G23830.1 | chr2:10143646-10144511 FORWARD LENGTH=150 113 2e-26
AT1G08820.1 | chr1:2821810-2824412 REVERSE LENGTH=387 110 1e-25
AT5G47180.1 | chr5:19161384-19163265 REVERSE LENGTH=221 104 1e-23
>AT4G00170.1 | chr4:70732-72085 REVERSE LENGTH=240
Length = 239
Score = 136 bits (343), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 64/103 (62%), Positives = 81/103 (78%), Gaps = 1/103 (0%)
Query: 5 LLRIYPSELKIPFELKRQNSGILELTNKTDHH-VAFKVKTTNPRKYSVRPTTGIVLPRGS 63
L+ I+P+ELK PFELK+Q+S ++LTNKT VAFKVKTTNPRKY VRP TG+VLP S
Sbjct: 6 LVNIHPTELKFPFELKKQSSCSMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVVLPGDS 65
Query: 64 CGITISMQPPKEIPTDYNCKDKFLIQSVVVEDGTTQKDIHSDM 106
C +T++MQ KE P D CKDKFL+Q+VVV DGTT K++ ++M
Sbjct: 66 CNVTVTMQAQKEAPLDMQCKDKFLVQTVVVSDGTTSKEVLAEM 108
>AT3G60600.1 | chr3:22400537-22402408 FORWARD LENGTH=257
Length = 256
Score = 127 bits (320), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 61/107 (57%), Positives = 80/107 (74%), Gaps = 1/107 (0%)
Query: 1 MSNT-LLRIYPSELKIPFELKRQNSGILELTNKTDHHVAFKVKTTNPRKYSVRPTTGIVL 59
MSN+ LL + P +L+ PFELK+Q S L LTNKTD++VAFKVKTTNP+KY VRP TG+VL
Sbjct: 17 MSNSELLTVEPLDLQFPFELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGVVL 76
Query: 60 PRGSCGITISMQPPKEIPTDYNCKDKFLIQSVVVEDGTTQKDIHSDM 106
PR +C + ++MQ KE P+D CKDKFL+Q V+ G T K++ +M
Sbjct: 77 PRSTCEVLVTMQAQKEAPSDMQCKDKFLLQGVIASPGVTAKEVTPEM 123
>AT2G45140.1 | chr2:18611029-18612971 FORWARD LENGTH=240
Length = 239
Score = 126 bits (316), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/106 (58%), Positives = 75/106 (70%)
Query: 1 MSNTLLRIYPSELKIPFELKRQNSGILELTNKTDHHVAFKVKTTNPRKYSVRPTTGIVLP 60
MSN LL I P +L+ PFELK+Q S L L NKTD++VAFKVKTTNP+KY VRP TG+V P
Sbjct: 1 MSNELLTIDPVDLQFPFELKKQISCSLYLGNKTDNYVAFKVKTTNPKKYCVRPNTGVVHP 60
Query: 61 RGSCGITISMQPPKEIPTDYNCKDKFLIQSVVVEDGTTQKDIHSDM 106
R S + ++MQ KE P D CKDKFL+Q VV G T KD+ +M
Sbjct: 61 RSSSEVLVTMQAQKEAPADLQCKDKFLLQCVVASPGATPKDVTHEM 106
>AT1G51270.3 | chr1:19007577-19011225 FORWARD LENGTH=638
Length = 637
Score = 114 bits (285), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/106 (52%), Positives = 72/106 (67%)
Query: 1 MSNTLLRIYPSELKIPFELKRQNSGILELTNKTDHHVAFKVKTTNPRKYSVRPTTGIVLP 60
MS+ LL I P +++ P EL ++ S L LTNKT+++VAFK KTTN +KY VRP G+VLP
Sbjct: 172 MSDELLIIDPVDVQFPIELNKKVSCSLNLTNKTENYVAFKAKTTNAKKYYVRPNVGVVLP 231
Query: 61 RGSCGITISMQPPKEIPTDYNCKDKFLIQSVVVEDGTTQKDIHSDM 106
R SC + + MQ KE P D C+DK L Q VVE TT KD+ S+M
Sbjct: 232 RSSCEVLVIMQALKEAPADMQCRDKLLFQCKVVEPETTAKDVTSEM 277
Score = 108 bits (269), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 69/105 (65%)
Query: 2 SNTLLRIYPSELKIPFELKRQNSGILELTNKTDHHVAFKVKTTNPRKYSVRPTTGIVLPR 61
++ LL +++ P EL +Q S L LTNKTD++VAFK +TT P+ Y V+P+ G+VLPR
Sbjct: 3 TDELLTFDHVDIRFPIELNKQGSCSLNLTNKTDNYVAFKAQTTKPKMYCVKPSVGVVLPR 62
Query: 62 GSCGITISMQPPKEIPTDYNCKDKFLIQSVVVEDGTTQKDIHSDM 106
SC + + MQ KE P D CKDK L Q VVE GT K++ S+M
Sbjct: 63 SSCEVLVVMQALKEAPADRQCKDKLLFQCKVVEPGTMDKEVTSEM 107
>AT2G23830.1 | chr2:10143646-10144511 FORWARD LENGTH=150
Length = 149
Score = 113 bits (282), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 73/105 (69%)
Query: 2 SNTLLRIYPSELKIPFELKRQNSGILELTNKTDHHVAFKVKTTNPRKYSVRPTTGIVLPR 61
+N LL I P L+ PFELK+Q S L LTNKTD++VAFKVKTTN Y VRP G++LP+
Sbjct: 3 NNELLEIEPMYLQFPFELKKQMSCSLYLTNKTDNNVAFKVKTTNRNNYCVRPNYGLILPK 62
Query: 62 GSCGITISMQPPKEIPTDYNCKDKFLIQSVVVEDGTTQKDIHSDM 106
+C + ++MQ KE+P+D +KF+IQSV+ G T K++ +M
Sbjct: 63 STCKVLVTMQAQKEVPSDMQSFEKFMIQSVLASPGVTAKEVTREM 107
>AT1G08820.1 | chr1:2821810-2824412 REVERSE LENGTH=387
Length = 386
Score = 110 bits (276), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 71/106 (66%)
Query: 1 MSNTLLRIYPSELKIPFELKRQNSGILELTNKTDHHVAFKVKTTNPRKYSVRPTTGIVLP 60
M+ LL I P L+ +LK+Q S +++LTN T H+VAFKVKTT+P+KY VRP G+V P
Sbjct: 1 MNMPLLDIQPRTLQFAVDLKKQTSCVVQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAP 60
Query: 61 RGSCGITISMQPPKEIPTDYNCKDKFLIQSVVVEDGTTQKDIHSDM 106
+ +C T+ MQ KE P D CKDKFLIQS V TT +DI + M
Sbjct: 61 KSTCEFTVIMQAFKEPPPDMVCKDKFLIQSTAVSAETTDEDITASM 106
>AT5G47180.1 | chr5:19161384-19163265 REVERSE LENGTH=221
Length = 220
Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 67/91 (73%)
Query: 3 NTLLRIYPSELKIPFELKRQNSGILELTNKTDHHVAFKVKTTNPRKYSVRPTTGIVLPRG 62
N L+ I P ELK FEL++Q+ L++ NKT+++VAFKVKTT+P+KY VRP TG++ P
Sbjct: 7 NQLISIQPDELKFLFELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTGVIQPWD 66
Query: 63 SCGITISMQPPKEIPTDYNCKDKFLIQSVVV 93
SC I +++Q +E P D CKDKFL+QS +V
Sbjct: 67 SCIIRVTLQAQREYPPDMQCKDKFLLQSTIV 97
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.134 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,394,411
Number of extensions: 89288
Number of successful extensions: 199
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 9
Length of query: 106
Length of database: 11,106,569
Length adjustment: 75
Effective length of query: 31
Effective length of database: 9,050,369
Effective search space: 280561439
Effective search space used: 280561439
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 105 (45.1 bits)