BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0661900 Os02g0661900|AK061447
(106 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0661900 Similar to Vesicle-associated membrane protein... 219 2e-58
Os04g0554200 Major sperm protein domain containing protein 143 2e-35
Os08g0155100 Major sperm protein domain containing protein 139 7e-34
Os08g0156700 Similar to VAP27 129 4e-31
Os04g0534400 Major sperm protein domain containing protein 121 1e-28
Os02g0643000 Similar to VAP27 115 7e-27
Os10g0507600 Major sperm protein domain containing protein 112 7e-26
Os01g0936800 PapD-like domain containing protein 109 4e-25
Os02g0652550 Major sperm protein domain containing protein 105 8e-24
Os10g0549100 Major sperm protein domain containing protein 103 3e-23
Os05g0373000 Major sperm protein domain containing protein 96 7e-21
Os11g0274300 Protein kinase-like domain containing protein 72 6e-14
Os10g0200000 Protein kinase-like domain containing protein 67 4e-12
>Os02g0661900 Similar to Vesicle-associated membrane protein-associated protein
B/C (VAMP- associated protein B/C) (VAMP-B/VAMP-C)
(VAP-B/VAP-C). Splice isoform 2
Length = 106
Score = 219 bits (559), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 106/106 (100%), Positives = 106/106 (100%)
Query: 1 MSNTLLRIYPSELKIPFELKRQNSGILELTNKTDHHVAFKVKTTNPRKYSVRPTTGIVLP 60
MSNTLLRIYPSELKIPFELKRQNSGILELTNKTDHHVAFKVKTTNPRKYSVRPTTGIVLP
Sbjct: 1 MSNTLLRIYPSELKIPFELKRQNSGILELTNKTDHHVAFKVKTTNPRKYSVRPTTGIVLP 60
Query: 61 RGSCGITISMQPPKEIPTDYNCKDKFLIQSVVVEDGTTQKDIHSDM 106
RGSCGITISMQPPKEIPTDYNCKDKFLIQSVVVEDGTTQKDIHSDM
Sbjct: 61 RGSCGITISMQPPKEIPTDYNCKDKFLIQSVVVEDGTTQKDIHSDM 106
>Os04g0554200 Major sperm protein domain containing protein
Length = 244
Score = 143 bits (361), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 66/102 (64%), Positives = 82/102 (80%)
Query: 1 MSNTLLRIYPSELKIPFELKRQNSGILELTNKTDHHVAFKVKTTNPRKYSVRPTTGIVLP 60
MSNTLLR++PSELKIP+E KR+ S ++LTNKT+ +VAFKVKTTNPRKYSVR GI+ P
Sbjct: 1 MSNTLLRVHPSELKIPYEYKRKRSCCMQLTNKTNQYVAFKVKTTNPRKYSVRHACGILPP 60
Query: 61 RGSCGITISMQPPKEIPTDYNCKDKFLIQSVVVEDGTTQKDI 102
R SC IT++MQ P E+ +DY+CKDKFL+QSV V G T +D
Sbjct: 61 RSSCDITVTMQAPVEMLSDYHCKDKFLVQSVAVGYGATMRDF 102
>Os08g0155100 Major sperm protein domain containing protein
Length = 237
Score = 139 bits (349), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 80/106 (75%)
Query: 1 MSNTLLRIYPSELKIPFELKRQNSGILELTNKTDHHVAFKVKTTNPRKYSVRPTTGIVLP 60
MS + L I PSEL PFEL +Q+S ++LTNKTDH+VAFKVKTTNP++Y VRP G+VLP
Sbjct: 1 MSASFLEIQPSELSFPFELLKQSSCSMQLTNKTDHYVAFKVKTTNPKQYCVRPNIGVVLP 60
Query: 61 RGSCGITISMQPPKEIPTDYNCKDKFLIQSVVVEDGTTQKDIHSDM 106
+C +T++MQ +E P D CKDKFL+QSV E+G T +DI ++M
Sbjct: 61 GSTCDVTVTMQAQREAPPDMQCKDKFLVQSVAAENGATTQDISAEM 106
>Os08g0156700 Similar to VAP27
Length = 243
Score = 129 bits (325), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 58/105 (55%), Positives = 78/105 (74%)
Query: 2 SNTLLRIYPSELKIPFELKRQNSGILELTNKTDHHVAFKVKTTNPRKYSVRPTTGIVLPR 61
+ LLRI P EL+ PFELK+Q S ++L+N +D ++AFKVKTT+P+KYSVRP TG+VLPR
Sbjct: 9 AGELLRIDPVELRFPFELKKQISCSMQLSNLSDDYIAFKVKTTSPKKYSVRPNTGVVLPR 68
Query: 62 GSCGITISMQPPKEIPTDYNCKDKFLIQSVVVEDGTTQKDIHSDM 106
+C + ++MQ +E P D CKDKFL+QSV+ G T KDI +M
Sbjct: 69 STCDVVVTMQAQREAPPDMQCKDKFLVQSVIAPSGVTVKDITGEM 113
>Os04g0534400 Major sperm protein domain containing protein
Length = 250
Score = 121 bits (303), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/105 (54%), Positives = 76/105 (72%)
Query: 2 SNTLLRIYPSELKIPFELKRQNSGILELTNKTDHHVAFKVKTTNPRKYSVRPTTGIVLPR 61
S LL I P EL+ FE K+Q S ++LTN+TD ++AFKVKTT+P+KY VRP +GIV PR
Sbjct: 5 SKELLGIEPLELRFSFETKKQISCSMQLTNRTDDYIAFKVKTTSPKKYCVRPNSGIVPPR 64
Query: 62 GSCGITISMQPPKEIPTDYNCKDKFLIQSVVVEDGTTQKDIHSDM 106
+ + ++MQ +E P D CKDKFL+QSVVV +GTT KD+ +M
Sbjct: 65 STSDVIVTMQAQREAPADMQCKDKFLVQSVVVTEGTTTKDVTGEM 109
>Os02g0643000 Similar to VAP27
Length = 259
Score = 115 bits (288), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 58/105 (55%), Positives = 70/105 (66%)
Query: 2 SNTLLRIYPSELKIPFELKRQNSGILELTNKTDHHVAFKVKTTNPRKYSVRPTTGIVLPR 61
S LL I P EL PFELK+Q S L LTNKTD +V FKVKTT+P+KY VRP GIV P+
Sbjct: 39 SRELLGIDPPELIFPFELKKQISCSLHLTNKTDEYVTFKVKTTSPKKYCVRPNNGIVAPQ 98
Query: 62 GSCGITISMQPPKEIPTDYNCKDKFLIQSVVVEDGTTQKDIHSDM 106
+ + ++MQ +E P D CKDKFL+QS +V T KDI DM
Sbjct: 99 STSNVLVTMQAQREAPPDMQCKDKFLVQSAIVTQELTPKDITGDM 143
>Os10g0507600 Major sperm protein domain containing protein
Length = 240
Score = 112 bits (279), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 71/105 (67%)
Query: 2 SNTLLRIYPSELKIPFELKRQNSGILELTNKTDHHVAFKVKTTNPRKYSVRPTTGIVLPR 61
S L+ + P EL+ PFEL +Q S L + NKT+ VAFKVKTT+P+KY VRP G+V PR
Sbjct: 4 SCDLVDVDPPELQFPFELDKQISCPLRIANKTERTVAFKVKTTSPKKYCVRPNNGVVRPR 63
Query: 62 GSCGITISMQPPKEIPTDYNCKDKFLIQSVVVEDGTTQKDIHSDM 106
+ + ++MQ P D CKDKFL+QSVVV+DG + KDI S M
Sbjct: 64 SASVVVVTMQAQIVAPPDLQCKDKFLVQSVVVDDGLSAKDITSQM 108
>Os01g0936800 PapD-like domain containing protein
Length = 380
Score = 109 bits (273), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 72/102 (70%)
Query: 1 MSNTLLRIYPSELKIPFELKRQNSGILELTNKTDHHVAFKVKTTNPRKYSVRPTTGIVLP 60
M L I+P EL+ FE+K+Q+S + L NK++ +VAFKVKTT+P++Y VRP TG++LP
Sbjct: 1 MGQDLAEIHPRELQFTFEVKKQSSCTVHLVNKSNEYVAFKVKTTSPKRYCVRPNTGVILP 60
Query: 61 RGSCGITISMQPPKEIPTDYNCKDKFLIQSVVVEDGTTQKDI 102
R +C T++MQ + P D KDKFL+Q+ VV GT+ +D+
Sbjct: 61 RSTCDFTVTMQAQRTAPPDMQLKDKFLVQTTVVPYGTSDEDL 102
>Os02g0652550 Major sperm protein domain containing protein
Length = 120
Score = 105 bits (262), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 65/102 (63%)
Query: 4 TLLRIYPSELKIPFELKRQNSGILELTNKTDHHVAFKVKTTNPRKYSVRPTTGIVLPRGS 63
TL+ IYP +L FEL + L++ N ++HHVAFKVKTT+PRKY VRP IV P S
Sbjct: 6 TLISIYPEDLTFLFELDKPCYCNLKVVNNSEHHVAFKVKTTSPRKYFVRPNANIVQPWDS 65
Query: 64 CGITISMQPPKEIPTDYNCKDKFLIQSVVVEDGTTQKDIHSD 105
C ITI++Q KE P D CKDKFLIQS V T +I D
Sbjct: 66 CTITITLQAQKEYPQDMQCKDKFLIQSTRVAASTDMDEIPPD 107
>Os10g0549100 Major sperm protein domain containing protein
Length = 233
Score = 103 bits (256), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 64/101 (63%)
Query: 2 SNTLLRIYPSELKIPFELKRQNSGILELTNKTDHHVAFKVKTTNPRKYSVRPTTGIVLPR 61
S L+ IYP +L FEL + L++ N ++HHVAFKVKTT+PRKY VRP I+ P
Sbjct: 4 SGRLISIYPEDLTFLFELDKPCYCNLKVVNNSEHHVAFKVKTTSPRKYFVRPNASIIQPW 63
Query: 62 GSCGITISMQPPKEIPTDYNCKDKFLIQSVVVEDGTTQKDI 102
SC ITI++Q KE P D CKDKFLIQS V T +I
Sbjct: 64 DSCTITITLQAQKEYPPDMQCKDKFLIQSTKVAASTDMDEI 104
>Os05g0373000 Major sperm protein domain containing protein
Length = 477
Score = 95.5 bits (236), Expect = 7e-21, Method: Composition-based stats.
Identities = 45/98 (45%), Positives = 68/98 (69%)
Query: 5 LLRIYPSELKIPFELKRQNSGILELTNKTDHHVAFKVKTTNPRKYSVRPTTGIVLPRGSC 64
L+ I+P E++ FE+K+++S + L NK++ +VAFKVKTT+P++Y VRP G++LPR +C
Sbjct: 8 LVEIHPGEIRFEFEVKKKSSCYVCLVNKSEEYVAFKVKTTSPKRYCVRPNVGVILPRATC 67
Query: 65 GITISMQPPKEIPTDYNCKDKFLIQSVVVEDGTTQKDI 102
T+ MQ P D +DKFL+Q+ VV GT +DI
Sbjct: 68 VFTVIMQAQMIAPPDLQIRDKFLVQTTVVPFGTADEDI 105
>Os11g0274300 Protein kinase-like domain containing protein
Length = 693
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 12 ELKIPFELKRQNSGILELTNKTDHHVAFKVKTTNPRKYSVRPTTGIVLPRGSCGITISMQ 71
EL+ PFE+K+ S L+LTN+TD+ +AF K N +KYS +P G + P SC +T++M+
Sbjct: 572 ELRFPFEVKKDISCCLQLTNQTDYFIAFNTKA-NQKKYSTQPNKGTIAPWSSCYVTVTMK 630
Query: 72 PPKEIPTDYNCKDKFLIQSVVVED 95
+ P C D F++QS V +
Sbjct: 631 AQETAPPYLQCHDMFVVQSTRVNE 654
>Os10g0200000 Protein kinase-like domain containing protein
Length = 478
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Query: 5 LLRIYPSELKIPFELKRQNSGILELTNKTDHHVAFKVKTTNPRKYSVRPTTGIVLPRGSC 64
+L + P EL P + + + S + L NKT H+VA+K+ Y + P +G++ P+ +C
Sbjct: 353 ILSVNPLELWFPMKAQEEFSCSMLLKNKTHHYVAYKINAQKLNIYRIEPCSGLISPQFTC 412
Query: 65 GITISMQPPKEIPTDYNCKDKFLIQSVVVEDGTTQKDIHSDM 106
I++ MQ + + + D+ L+QSVVV D DI D+
Sbjct: 413 NISVRMQAQQGVSPNMQLMDRILVQSVVVSDDLI--DIAKDL 452
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.134 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,642,317
Number of extensions: 132667
Number of successful extensions: 228
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 14
Length of query: 106
Length of database: 17,035,801
Length adjustment: 74
Effective length of query: 32
Effective length of database: 13,171,965
Effective search space: 421502880
Effective search space used: 421502880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 149 (62.0 bits)