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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0200000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.68 (0.0304) R2 : 0.491
β1 : 2.28 (0.111) R2dD : 0.486 R2D : 0.387
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.543 (0.0649) R2dN8 : 0.105 R2N8 : 0.00548
σ : 0.571
deviance : 149.23
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
126.91 0.529 4.73 1.93 0.189 0.792 -0.475 -0.36 0.361 19.5 21.52 1075 -- --
127.01 0.525 4.72 2.02 0.194 0.77 -0.536 -- 0.383 19.5 21.6 1096 -- --
127.5 0.526 4.73 1.89 0.191 0.801 -- -0.559 0.348 19.5 21.7 1075 -- --
127.65 0.526 4.72 2.04 0.223 0.748 -- -- 0.387 19.5 21.6 1136 -- --
128.2 0.527 4.73 1.85 -- 0.909 -- -0.874 0.338 -- 21.7 884 -- --
143.66 0.562 4.68 2.27 0.298 -- -0.313 -- 0.544 21.3 -- -- -- --
144 0.562 4.68 2.28 0.298 -- -- -- 0.544 21.5 -- -- -- --
128.91 0.529 4.71 2.04 -- 0.851 -- -- 0.385 -- 21.4 892 -- --
137.84 0.547 4.87 -- 0.278 1.89 -- -- -0.294 21.1 13.72 47520 -- --
149.23 0.571 4.68 2.28 -- -- -- -- 0.543 -- -- -- -- --
281.09 0.784 4.74 -- 0.304 -- -- -- 0.29 22.1 -- -- -- --
142.19 0.555 4.87 -- -- 1.9 -- -- -0.298 -- 13.8 47520 -- --
286.7 0.79 4.73 -- -- -- -- -- 0.29 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 125.07 radiation 1 14400 < th dose dependent rect. 8 10
3 125.46 radiation 1 14400 < th dose independent rect. 8 9
4 125.46 radiation 10 43200 < th dose dependent rect. 18 12
7 125.52 radiation 1 14400 > th dose independent rect. 8 9
12 125.63 radiation 10 14400 < th dose dependent rect. 16 14
21 125.86 atmosphere 1015 43200 > th dose independent rect. 13 8
22 125.86 humidity 90 43200 > th dose dependent rect. 23 2
23 125.87 humidity 80 43200 > th dose dependent rect. 18 8
27 125.92 atmosphere 1015 43200 < th dose independent rect. 14 3
30 125.94 atmosphere 1015 43200 > th dose dependent rect. 20 4
32 125.95 atmosphere 1015 43200 > th dose independent rect. 13 5
34 125.96 atmosphere 1015 43200 > th dose dependent rect. 23 1
36 125.96 atmosphere 1015 43200 > th dose dependent rect. 19 7
55 126.08 radiation 10 14400 < th dose dependent rect. 4 2
56 126.08 radiation 10 14400 < th dose dependent rect. 2 4
63 126.09 radiation 10 14400 < th dose dependent rect. 21 9
78 126.14 atmosphere 1015 43200 < th dose independent rect. 13 6
80 126.15 atmosphere 1015 43200 < th dose independent rect. 15 6
82 126.15 radiation 1 43200 < th dose dependent rect. 15 3
85 126.16 atmosphere 1015 43200 > th dose independent rect. 17 4
86 126.17 humidity 90 43200 < th dose independent rect. 23 2
103 126.21 humidity 80 43200 > th dose dependent sin 14 NA
110 126.23 radiation 40 14400 < th dose dependent rect. 16 14
111 126.23 radiation 1 43200 < th dose dependent rect. 8 20
144 126.27 wind 1 43200 < th dose dependent rect. 7 1
157 126.29 radiation 1 43200 < th dose dependent rect. 4 14
178 126.32 radiation 1 43200 < th dose dependent sin 0 NA
193 126.33 radiation 10 14400 < th dose dependent rect. 16 11
198 126.33 radiation 1 14400 > th dose dependent rect. 16 14
202 126.34 humidity 90 43200 > th dose independent rect. 23 3
203 126.34 temperature 25 1440 < th dose independent rect. 15 7
204 126.34 radiation 1 43200 < th dose independent rect. 8 11
229 126.35 humidity 80 43200 > th dose dependent rect. 12 18
233 126.35 radiation 1 43200 < th dose dependent rect. 15 20
236 126.35 radiation 1 43200 < th dose dependent rect. 12 23
237 126.36 temperature 25 1440 < th dose independent rect. 16 5
243 126.37 radiation 10 14400 < th dose dependent rect. 18 4
251 126.38 radiation 40 14400 > th dose dependent rect. 14 2
252 126.38 radiation 10 14400 < th dose dependent rect. 18 2
292 126.40 radiation 30 43200 < th dose independent rect. 4 3
293 126.40 radiation 1 43200 < th dose dependent no NA NA
297 126.40 radiation 1 43200 < th dose dependent rect. 4 7
303 126.40 radiation 10 14400 < th dose dependent rect. 18 9
321 126.40 radiation 1 43200 < th dose dependent rect. 2 21
389 126.42 humidity 90 43200 < th dose independent rect. 21 7
391 126.42 radiation 1 43200 > th dose dependent rect. 18 1
513 126.47 atmosphere 1015 43200 > th dose dependent rect. 1 1
541 126.48 humidity 90 43200 > th dose independent rect. 23 1
611 126.50 atmosphere 1015 43200 > th dose dependent rect. 12 15
662 126.53 humidity 90 43200 > th dose independent rect. 1 1
684 126.54 radiation 1 43200 < th dose dependent rect. 14 9
709 126.55 atmosphere 1015 43200 > th dose dependent sin 15 NA
748 126.56 humidity 50 43200 > th dose independent rect. 10 2
755 126.57 humidity 50 43200 < th dose independent rect. 10 2
776 126.58 temperature 25 1440 > th dose independent rect. 16 3
816 126.60 radiation 30 43200 < th dose independent rect. 19 12
854 126.62 radiation 1 14400 > th dose dependent rect. 16 3
871 126.62 radiation 1 1440 < th dose dependent rect. 8 22
884 126.63 radiation 1 14400 > th dose dependent rect. 16 1
931 126.66 radiation 30 43200 < th dose independent rect. 23 8
936 126.66 radiation 40 14400 < th dose dependent rect. 16 4
943 126.66 radiation 40 14400 < th dose dependent rect. 16 8
959 126.67 humidity 60 43200 < th dose independent rect. 8 1
980 126.68 radiation 1 43200 < th dose independent sin 20 NA