BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0247100 Os02g0247100|Os02g0247100
(269 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0247100 Similar to BZIP protein BZO2H3 (Fragment) 347 5e-96
Os01g0756200 Similar to VirE2-interacting protein VIP1 201 7e-52
Os01g0211800 Similar to VirE2-interacting protein VIP1 156 1e-38
Os09g0516200 Transcription factor RF2a. Splice isoform 2 92 4e-19
Os07g0679500 Similar to Transcription factor RF2b 90 2e-18
Os12g0162500 Similar to BZIP-like protein 90 2e-18
Os03g0336200 Transcription factor RF2b 89 3e-18
Os08g0543900 Similar to Transcription factor RF2b 85 5e-17
Os10g0531900 Similar to BZIP-like protein 85 6e-17
Os03g0127500 Eukaryotic transcription factor, DNA-binding d... 85 6e-17
Os11g0218000 Eukaryotic transcription factor, DNA-binding d... 80 2e-15
Os02g0538900 Eukaryotic transcription factor, DNA-binding d... 78 6e-15
Os11g0160500 BZIP-like protein 77 1e-14
Os12g0194600 Basic-leucine zipper (bZIP) transcription fact... 77 1e-14
>Os02g0247100 Similar to BZIP protein BZO2H3 (Fragment)
Length = 269
Score = 347 bits (890), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 179/220 (81%), Positives = 179/220 (81%)
Query: 50 LMEAAVPMDDVIXXXXXXXEFDRLDDEQLMSMFSDVEAPAVSDGGGERGPAGEAHLXXXX 109
LMEAAVPMDDVI EFDRLDDEQLMSMFSDVEAPAVSDGGGERGPAGEAHL
Sbjct: 50 LMEAAVPMDDVIVGVGGGGEFDRLDDEQLMSMFSDVEAPAVSDGGGERGPAGEAHLMDMG 109
Query: 110 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPKRVKRILANRQSAQRSRVRKLQYISELE 169
DPKRVKRILANRQSAQRSRVRKLQYISELE
Sbjct: 110 DGDDGMGATSPAGAGAMAAAAAAAAADGIADPKRVKRILANRQSAQRSRVRKLQYISELE 169
Query: 170 RSVTTLQMEVSALSPRVAFLDHQRSLLTVGNSHLKQRIAALAQDKIFKDAHQEALKKEIE 229
RSVTTLQMEVSALSPRVAFLDHQRSLLTVGNSHLKQRIAALAQDKIFKDAHQEALKKEIE
Sbjct: 170 RSVTTLQMEVSALSPRVAFLDHQRSLLTVGNSHLKQRIAALAQDKIFKDAHQEALKKEIE 229
Query: 230 RLRQVYHQQQIKATGGADIATAASMQAKHELLACEGAAMR 269
RLRQVYHQQQIKATGGADIATAASMQAKHELLACEGAAMR
Sbjct: 230 RLRQVYHQQQIKATGGADIATAASMQAKHELLACEGAAMR 269
>Os01g0756200 Similar to VirE2-interacting protein VIP1
Length = 265
Score = 201 bits (510), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 112/183 (61%), Positives = 118/183 (64%), Gaps = 14/183 (7%)
Query: 69 EFDRLDDEQLMSMFSDVEAPAVSDGGGERGPAGEAHLXXXXXXXXXXXXXXX------XX 122
EFDRLDD+QLMSMF D GG P +
Sbjct: 68 EFDRLDDDQLMSMFPDE--------GGSSAPGSDNGGSDSDGGGDKHAAAQSDDGQHAAG 119
Query: 123 XXXXXXXXXXXXXXXXXDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQMEVSAL 182
DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQ EVS L
Sbjct: 120 EPTQEQAAATSPTELIRDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQNEVSVL 179
Query: 183 SPRVAFLDHQRSLLTVGNSHLKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQQIKA 242
SPRVAFLD QR++LTVGNSHLKQRIAALAQDKIFKDAHQEAL+KEIERLRQVY QQ K
Sbjct: 180 SPRVAFLDQQRTILTVGNSHLKQRIAALAQDKIFKDAHQEALRKEIERLRQVYQQQNTKL 239
Query: 243 TGG 245
+GG
Sbjct: 240 SGG 242
>Os01g0211800 Similar to VirE2-interacting protein VIP1
Length = 330
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/88 (88%), Positives = 81/88 (92%)
Query: 140 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQMEVSALSPRVAFLDHQRSLLTVG 199
DPKRVKRILANRQSAQRSRVRKLQYISELERSVT+LQ EVSALSPRVAFLDHQRSLLT+G
Sbjct: 188 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSALSPRVAFLDHQRSLLTLG 247
Query: 200 NSHLKQRIAALAQDKIFKDAHQEALKKE 227
NSHLKQRIAALAQDKIFKD E +E
Sbjct: 248 NSHLKQRIAALAQDKIFKDGGTEEGDRE 275
>Os09g0516200 Transcription factor RF2a. Splice isoform 2
Length = 368
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 62/93 (66%)
Query: 140 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQMEVSALSPRVAFLDHQRSLLTVG 199
DPKR KRI ANRQSA RS+ RK++YI+ELER V TLQ E + LS ++A L S LT
Sbjct: 169 DPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLALLQRDTSGLTTE 228
Query: 200 NSHLKQRIAALAQDKIFKDAHQEALKKEIERLR 232
NS LK R+ + Q +DA + LK E++RL+
Sbjct: 229 NSELKLRLQTMEQQVHLQDALNDTLKSEVQRLK 261
>Os07g0679500 Similar to Transcription factor RF2b
Length = 330
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 63/93 (67%)
Query: 140 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQMEVSALSPRVAFLDHQRSLLTVG 199
DPKR KRILANRQSA RS+ RK +YI+ELER V TLQ E + LS ++ + L+
Sbjct: 123 DPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLFQRDTTGLSAE 182
Query: 200 NSHLKQRIAALAQDKIFKDAHQEALKKEIERLR 232
N+ LK R+ A+ Q +DA +ALK+E+ERL+
Sbjct: 183 NAELKIRLQAMEQQAQLRDALNDALKQEVERLK 215
>Os12g0162500 Similar to BZIP-like protein
Length = 328
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 63/93 (67%)
Query: 140 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQMEVSALSPRVAFLDHQRSLLTVG 199
DPKR KRILANRQSA RS+ RK++Y SELER V TLQ E + LS ++ L S LT
Sbjct: 162 DPKRAKRILANRQSAARSKERKIKYTSELERKVQTLQTEATTLSAQLTLLQRDTSGLTAE 221
Query: 200 NSHLKQRIAALAQDKIFKDAHQEALKKEIERLR 232
N LK R+ ++ + +DA EAL++E++RL+
Sbjct: 222 NRELKLRLQSMEEQAKLRDALNEALREEVQRLK 254
>Os03g0336200 Transcription factor RF2b
Length = 329
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 63/93 (67%)
Query: 140 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQMEVSALSPRVAFLDHQRSLLTVG 199
DPKR KRILANRQSA RS+ RK +YI+ELER V TLQ E + LS ++ + L+
Sbjct: 132 DPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLFQRDTTGLSAE 191
Query: 200 NSHLKQRIAALAQDKIFKDAHQEALKKEIERLR 232
N+ LK R+ A+ Q +DA +ALK+E+ERL+
Sbjct: 192 NAELKIRLQAMEQQAQLRDALNDALKQELERLK 224
>Os08g0543900 Similar to Transcription factor RF2b
Length = 464
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 60/93 (64%)
Query: 140 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQMEVSALSPRVAFLDHQRSLLTVG 199
DPKRVKRILANRQSA RS+ RK++YI ELE V LQ E + LS ++ L + L
Sbjct: 320 DPKRVKRILANRQSAARSKERKMRYIQELEHKVQVLQTEATTLSAQLTMLQRDSTGLATQ 379
Query: 200 NSHLKQRIAALAQDKIFKDAHQEALKKEIERLR 232
N+ LK R+ A+ Q +DA EAL E++RL+
Sbjct: 380 NNELKIRLQAMEQQAQLRDALNEALTAEVQRLK 412
>Os10g0531900 Similar to BZIP-like protein
Length = 400
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 62/93 (66%)
Query: 140 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQMEVSALSPRVAFLDHQRSLLTVG 199
DPKRVKR+LANRQSA RS+ R+++YI+ELE+ V LQ E + LS ++ L S +
Sbjct: 246 DPKRVKRVLANRQSAARSKERRMRYIAELEQKVQILQTEATTLSAQLTLLQRDSSGMATQ 305
Query: 200 NSHLKQRIAALAQDKIFKDAHQEALKKEIERLR 232
N+ LK R+ ++ Q +DA EAL E++RL+
Sbjct: 306 NNELKFRLQSMEQQAQLRDALNEALTAEVQRLK 338
>Os03g0127500 Eukaryotic transcription factor, DNA-binding domain containing
protein
Length = 426
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 62/93 (66%)
Query: 140 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQMEVSALSPRVAFLDHQRSLLTVG 199
DPKRVKR+LANRQSA RS+ RK++YI+ELE+ V LQ E + LS ++ + + L
Sbjct: 275 DPKRVKRVLANRQSAARSKERKMRYIAELEQKVQILQSEATNLSAQLTMMQRDSAGLATQ 334
Query: 200 NSHLKQRIAALAQDKIFKDAHQEALKKEIERLR 232
N+ LK R+ A+ Q +DA EAL E++RL+
Sbjct: 335 NNELKFRLHAMEQQAQLRDALNEALTTEVQRLK 367
>Os11g0218000 Eukaryotic transcription factor, DNA-binding domain containing
protein
Length = 364
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 58/87 (66%)
Query: 149 ANRQSAQRSRVRKLQYISELERSVTTLQMEVSALSPRVAFLDHQRSLLTVGNSHLKQRIA 208
A +Q AQRSRVRKLQYI+ELER V LQ E +S + FL Q +L + N LKQR+
Sbjct: 227 AKQQYAQRSRVRKLQYIAELERKVQALQSEGIDVSAEMEFLSQQNIMLDLENKALKQRLE 286
Query: 209 ALAQDKIFKDAHQEALKKEIERLRQVY 235
+LAQ+++ K QE ++EI RLR +Y
Sbjct: 287 SLAQEQLIKRFQQEMFEREIGRLRSLY 313
>Os02g0538900 Eukaryotic transcription factor, DNA-binding domain containing
protein
Length = 326
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 60/84 (71%)
Query: 151 RQSAQRSRVRKLQYISELERSVTTLQMEVSALSPRVAFLDHQRSLLTVGNSHLKQRIAAL 210
R+S QRSRVRKLQYI++LER+V +LQ + L+ RVA L R+ L++ N L+++I +L
Sbjct: 190 RRSGQRSRVRKLQYIADLERTVDSLQNIGADLAVRVASLFQLRNALSMENKQLRRQITSL 249
Query: 211 AQDKIFKDAHQEALKKEIERLRQV 234
Q K+ KD + LKKE ERL+Q+
Sbjct: 250 QQAKLIKDGQTQMLKKETERLKQL 273
>Os11g0160500 BZIP-like protein
Length = 200
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 62/93 (66%)
Query: 140 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQMEVSALSPRVAFLDHQRSLLTVG 199
DPKR KRILANRQSA RS+ RK++Y ELER V TLQ E + LS ++ L S LT
Sbjct: 34 DPKRAKRILANRQSAARSKERKIKYTGELERKVQTLQTEATTLSTQLTLLQRDTSGLTAE 93
Query: 200 NSHLKQRIAALAQDKIFKDAHQEALKKEIERLR 232
N LK R+ ++ + +DA +AL++E++RL+
Sbjct: 94 NRELKLRLQSMEEQAKLRDALNDALREEVQRLK 126
>Os12g0194600 Basic-leucine zipper (bZIP) transcription factor domain containing
protein
Length = 150
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 56/85 (65%)
Query: 151 RQSAQRSRVRKLQYISELERSVTTLQMEVSALSPRVAFLDHQRSLLTVGNSHLKQRIAAL 210
RQ AQRSRVRKLQYI+ELER V LQ E +S + FL Q +L + N LKQR+ +L
Sbjct: 15 RQYAQRSRVRKLQYIAELERRVQALQTEGVEVSAEMDFLGQQNIMLDLENKALKQRLESL 74
Query: 211 AQDKIFKDAHQEALKKEIERLRQVY 235
+Q+ + K QE ++EI RLR ++
Sbjct: 75 SQEHLIKRFQQEMFEREIGRLRSLF 99
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.129 0.348
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,451,977
Number of extensions: 165041
Number of successful extensions: 921
Number of sequences better than 1.0e-10: 15
Number of HSP's gapped: 921
Number of HSP's successfully gapped: 15
Length of query: 269
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 170
Effective length of database: 11,866,615
Effective search space: 2017324550
Effective search space used: 2017324550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)