Os08g0543900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcription factor RF2b.
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Os08g0543900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transcription factor RF2b.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.11 | 0.245 | 11 | 0.0193 | 0.282 | 1.05 | -0.338 | -0.915 | 0.324 | 2.02 | 9.964 | 9 | -- | -- |
| 27.59 | 0.245 | 10.9 | 0.148 | 0.29 | 1.05 | -0.0956 | -- | 0.358 | 2.14 | 8.966 | 8 | -- | -- |
| 27.4 | 0.244 | 11 | 0.0805 | 0.289 | 1.06 | -- | -0.512 | 0.339 | 2.13 | 8.349 | 8 | -- | -- |
| 27.62 | 0.245 | 10.9 | 0.15 | 0.292 | 1.05 | -- | -- | 0.358 | 2.16 | 8.701 | 8 | -- | -- |
| 30.66 | 0.258 | 10.9 | 0.151 | -- | 0.726 | -- | -0.551 | 0.389 | -- | 11.42 | 44 | -- | -- |
| 37.96 | 0.289 | 10.9 | 0.348 | 0.00563 | -- | 0.24 | -- | 0.504 | 14 | -- | -- | -- | -- |
| 38.17 | 0.289 | 10.9 | 0.355 | 0.0157 | -- | -- | -- | 0.506 | 18.2 | -- | -- | -- | -- |
| 30.95 | 0.259 | 10.9 | 0.222 | -- | 0.713 | -- | -- | 0.411 | -- | 2.242 | 43 | -- | -- |
| 28.16 | 0.247 | 11 | -- | 0.315 | 1.13 | -- | -- | 0.332 | 2.18 | 9.825 | 8 | -- | -- |
| 38.18 | 0.289 | 10.9 | 0.355 | -- | -- | -- | -- | 0.506 | -- | -- | -- | -- | -- |
| 41.5 | 0.301 | 10.9 | -- | 0.0117 | -- | -- | -- | 0.466 | 19.9 | -- | -- | -- | -- |
| 32.16 | 0.264 | 10.9 | -- | -- | 0.785 | -- | -- | 0.379 | -- | 0.9703 | 44 | -- | -- |
| 41.5 | 0.301 | 10.9 | -- | -- | -- | -- | -- | 0.466 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.24 | temperature | 15 | 30 | > th | dose dependent | rect. | 6 | 21 |
| 20 | 26.29 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 27 | 26.47 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 37 | 27.02 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 38 | 27.05 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 40 | 27.06 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 46 | 27.13 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 47 | 27.13 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 49 | 27.16 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 50 | 27.18 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 64 | 27.38 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 86 | 27.72 | temperature | 30 | 30 | < th | dose dependent | sin | 5 | NA |
| 90 | 27.77 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 95 | 27.83 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 97 | 27.86 | temperature | 15 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 99 | 27.90 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 104 | 27.92 | temperature | 10 | 30 | > th | dose dependent | sin | 5 | NA |
| 109 | 27.94 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 20 |
| 113 | 27.97 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 118 | 28.01 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 18 |
| 143 | 28.14 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 20 |
| 152 | 28.19 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 16 |
| 166 | 28.25 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 192 | 28.37 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 18 |
| 331 | 28.88 | temperature | 15 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 408 | 29.08 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 443 | 29.17 | temperature | 15 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 483 | 29.25 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 21 |
| 503 | 29.30 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 21 |
| 543 | 29.39 | temperature | 15 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 544 | 29.39 | temperature | 15 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 608 | 29.51 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 611 | 29.52 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 16 |
| 759 | 29.80 | radiation | 30 | 4320 | < th | dose independent | rect. | 4 | 3 |
| 899 | 30.08 | radiation | 30 | 4320 | < th | dose independent | rect. | 18 | 13 |
| 931 | 30.14 | temperature | 20 | 10 | > th | dose dependent | rect. | 19 | 21 |
| 971 | 30.23 | temperature | 25 | 30 | < th | dose independent | rect. | 3 | 23 |
| 998 | 30.27 | temperature | 25 | 30 | < th | dose independent | rect. | 3 | 17 |