BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0543900 Os08g0543900|Os08g0543900
(464 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0543900 Similar to Transcription factor RF2b 577 e-165
Os03g0127500 Eukaryotic transcription factor, DNA-binding d... 261 1e-69
Os10g0531900 Similar to BZIP-like protein 259 3e-69
AF467732 251 8e-67
Os07g0679500 Similar to Transcription factor RF2b 181 1e-45
Os04g0181300 180 2e-45
Os03g0336200 Transcription factor RF2b 175 6e-44
Os09g0516200 Transcription factor RF2a. Splice isoform 2 170 2e-42
Os12g0162500 Similar to BZIP-like protein 167 1e-41
Os11g0160500 BZIP-like protein 142 5e-34
Os01g0756200 Similar to VirE2-interacting protein VIP1 90 4e-18
Os02g0247100 Similar to BZIP protein BZO2H3 (Fragment) 86 6e-17
Os01g0211800 Similar to VirE2-interacting protein VIP1 79 8e-15
>Os08g0543900 Similar to Transcription factor RF2b
Length = 464
Score = 577 bits (1486), Expect = e-165, Method: Compositional matrix adjust.
Identities = 306/426 (71%), Positives = 306/426 (71%)
Query: 1 MDDPGAADPGARPHHLSPGQPPVVPRSPTPLDXXXXXXXXXXXXXXXXXXXXXXXXHPQA 60
MDDPGAADPGARPHHLSPGQPPVVPRSPTPLD HPQA
Sbjct: 1 MDDPGAADPGARPHHLSPGQPPVVPRSPTPLDLSSAAAAAAAASYRRLSPSLRPPAHPQA 60
Query: 61 RLPSPYPQIPXXXXXXXXXXXXXXXRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
RLPSPYPQIP R
Sbjct: 61 RLPSPYPQIPSSSSAAAAGSSGHHARSLSQPLFFSLDSLPPLPYADLAAPPAIPPSPPSS 120
Query: 121 XXXXXXXXXXXRKGGHRRSQSDIPFGFSHLSXXXXXXXXVKREAATAAEGCRSDGDDFAL 180
RKGGHRRSQSDIPFGFSHLS VKREAATAAEGCRSDGDDFAL
Sbjct: 121 SSDPPPPGLPPRKGGHRRSQSDIPFGFSHLSPPLPPPAPVKREAATAAEGCRSDGDDFAL 180
Query: 181 YDLVNSYMDLDGMEALNSSEERHEDRDSRASGTRTGSVADSSENEAESHSTPVERKDGGG 240
YDLVNSYMDLDGMEALNSSEERHEDRDSRASGTRTGSVADSSENEAESHSTPVERKDGGG
Sbjct: 181 YDLVNSYMDLDGMEALNSSEERHEDRDSRASGTRTGSVADSSENEAESHSTPVERKDGGG 240
Query: 241 KSRHCRSLSVDSFIEKLNFDESPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFANGEFT 300
KSRHCRSLSVDSFIEKLNFDESPK EFANGEFT
Sbjct: 241 KSRHCRSLSVDSFIEKLNFDESPKLPLPSPSGGLSRSGSGSLDGGAASLFGAEFANGEFT 300
Query: 301 EAEKKKIMANERLAEIALTDPKRVKRILANRQSAARSKERKMRYIQELEHKVQVLQTEAT 360
EAEKKKIMANERLAEIALTDPKRVKRILANRQSAARSKERKMRYIQELEHKVQVLQTEAT
Sbjct: 301 EAEKKKIMANERLAEIALTDPKRVKRILANRQSAARSKERKMRYIQELEHKVQVLQTEAT 360
Query: 361 TLSAQLTMLQRDSTGLATQNNELKIRLQAMEQQAQLRDALNEALTAEVQRLKLATGEITD 420
TLSAQLTMLQRDSTGLATQNNELKIRLQAMEQQAQLRDALNEALTAEVQRLKLATGEITD
Sbjct: 361 TLSAQLTMLQRDSTGLATQNNELKIRLQAMEQQAQLRDALNEALTAEVQRLKLATGEITD 420
Query: 421 GRMSKG 426
GRMSKG
Sbjct: 421 GRMSKG 426
>Os03g0127500 Eukaryotic transcription factor, DNA-binding domain containing
protein
Length = 426
Score = 261 bits (666), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 158/311 (50%), Positives = 188/311 (60%), Gaps = 46/311 (14%)
Query: 136 HRRSQSDIPFGF---SHLSXXXXXXXXVKREAATAAEGCRSDGDDFALYDLVNSYMDLDG 192
HRRS SD+PFG+ H A A +D DL N+Y++L+G
Sbjct: 85 HRRSSSDVPFGYLAGQHQLLPPKVEAGWGHLGAGAGGAAAAD-------DLFNAYLNLEG 137
Query: 193 MEALNSSEERHEDRDSRASGTRTGSVADSSENEAESHS------TPVERKDGGGK----- 241
++ LNSS++RH++ DSR S +T ADSSENE+E + + DGG +
Sbjct: 138 LDGLNSSDDRHDEGDSRGSSIKTNG-ADSSENESEECADDTRGGIRLWSADGGERREGVK 196
Query: 242 ------------SRHCRSLSVDSFIEKLNFDESPKXXXXXXXXXXXXXXXXXXXXXXXXX 289
+RH RSLS+DS I K NF
Sbjct: 197 RNAAGEPATAPLARHARSLSMDSLIGKFNF------------TAGTAAAAGNGVALGPNR 244
Query: 290 XXXEFANGEFTEAEKKKIMANERLAEIALTDPKRVKRILANRQSAARSKERKMRYIQELE 349
EF +GEFT +E KKIMA+E+LAE+AL DPKRVKR+LANRQSAARSKERKMRYI ELE
Sbjct: 245 FSLEFGSGEFTPSEMKKIMADEKLAEMALADPKRVKRVLANRQSAARSKERKMRYIAELE 304
Query: 350 HKVQVLQTEATTLSAQLTMLQRDSTGLATQNNELKIRLQAMEQQAQLRDALNEALTAEVQ 409
KVQ+LQ+EAT LSAQLTM+QRDS GLATQNNELK RL AMEQQAQLRDALNEALT EVQ
Sbjct: 305 QKVQILQSEATNLSAQLTMMQRDSAGLATQNNELKFRLHAMEQQAQLRDALNEALTTEVQ 364
Query: 410 RLKLATGEITD 420
RLKLAT E+ D
Sbjct: 365 RLKLATAELGD 375
>Os10g0531900 Similar to BZIP-like protein
Length = 400
Score = 259 bits (662), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 158/308 (51%), Positives = 190/308 (61%), Gaps = 57/308 (18%)
Query: 136 HRRSQSDIPFGFSHLSXXXXXXXXVKREAATAAEGCRSDGDDFALYDLVNSYMDLDGM-- 193
HRRS+SD+PFG+ ++ A GC GD DL+N+YM L+GM
Sbjct: 73 HRRSRSDVPFGY--FQPLPPPSPKMEAGGGWALPGCGGAGD----VDLLNAYMSLEGMGG 126
Query: 194 -EALNSSEERHEDRDSRASGTRTGSVADSSENEAESH------------------STPVE 234
+ LN+S D DSR S RT ADSSENE+E + +
Sbjct: 127 ADGLNNS-----DGDSRGSSMRTNG-ADSSENESEDYVGADSQALLWGGAGGGEAAGKKR 180
Query: 235 RKDGGGK--SRHCRSLSVDSFIEKLNFDESPKXXXXXXXXXXXXXXXXXXXXXXXXXXXX 292
R + G+ +RH RSLS+DS + KL+F
Sbjct: 181 RNNAAGEKAARHARSLSMDSLMGKLSF----------------------AANGEPAKFSL 218
Query: 293 EFANGEFTEAEKKKIMANERLAEIALTDPKRVKRILANRQSAARSKERKMRYIQELEHKV 352
EF +GEFT AE K+IMA+E+LAE+AL DPKRVKR+LANRQSAARSKER+MRYI ELE KV
Sbjct: 219 EFGSGEFTPAEMKRIMADEKLAEMALADPKRVKRVLANRQSAARSKERRMRYIAELEQKV 278
Query: 353 QVLQTEATTLSAQLTMLQRDSTGLATQNNELKIRLQAMEQQAQLRDALNEALTAEVQRLK 412
Q+LQTEATTLSAQLT+LQRDS+G+ATQNNELK RLQ+MEQQAQLRDALNEALTAEVQRLK
Sbjct: 279 QILQTEATTLSAQLTLLQRDSSGMATQNNELKFRLQSMEQQAQLRDALNEALTAEVQRLK 338
Query: 413 LATGEITD 420
LA E+ D
Sbjct: 339 LAANEVCD 346
>AF467732
Length = 186
Score = 251 bits (641), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 134/177 (75%), Positives = 140/177 (79%), Gaps = 1/177 (0%)
Query: 209 RASGTRTGSVADSSENEAESHSTPVERKDGGGKSRHCRSLSVDSFIEKLNFDESPKXXXX 268
RASGTRTGSVADSSENEAESHSTPVERKDGGGKSRHCRSLSVDSFIEKLNFDESPK
Sbjct: 2 RASGTRTGSVADSSENEAESHSTPVERKDGGGKSRHCRSLSVDSFIEKLNFDESPKLPLP 61
Query: 269 XXXXXXXXXXXXXXXXXXXXXXXXEFANGEFTEAEKKKIMANERLAEIALTDPKRVKRIL 328
EFANGEFTEAEKKKIMANERLAEIALTDPKRVKRIL
Sbjct: 62 SPSGGLSRSGSGSLDGGAASLFGAEFANGEFTEAEKKKIMANERLAEIALTDPKRVKRIL 121
Query: 329 ANRQSAARSKERKMRYIQELEHKVQVLQTEATTLSAQLTMLQRDSTGLATQNNELKI 385
ANRQSAARSKERKMRYIQ+LEHKVQVLQTEA+TLS L L+R + + QNNELK+
Sbjct: 122 ANRQSAARSKERKMRYIQKLEHKVQVLQTEASTLSHSLKCLRR-TPWTSPQNNELKL 177
>Os07g0679500 Similar to Transcription factor RF2b
Length = 330
Score = 181 bits (458), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 94/125 (75%), Positives = 107/125 (85%), Gaps = 1/125 (0%)
Query: 295 ANGEFTEA-EKKKIMANERLAEIALTDPKRVKRILANRQSAARSKERKMRYIQELEHKVQ 353
A G F+E E KK M++E+LAE+A DPKR KRILANRQSAARSKERK RYI ELE KVQ
Sbjct: 97 AGGVFSEVMEAKKAMSSEQLAELAAIDPKRAKRILANRQSAARSKERKARYITELERKVQ 156
Query: 354 VLQTEATTLSAQLTMLQRDSTGLATQNNELKIRLQAMEQQAQLRDALNEALTAEVQRLKL 413
LQTEATTLSAQLT+ QRD+TGL+ +N ELKIRLQAMEQQAQLRDALN+AL EV+RLK+
Sbjct: 157 TLQTEATTLSAQLTLFQRDTTGLSAENAELKIRLQAMEQQAQLRDALNDALKQEVERLKI 216
Query: 414 ATGEI 418
ATGE+
Sbjct: 217 ATGEM 221
>Os04g0181300
Length = 426
Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 153/294 (52%), Gaps = 37/294 (12%)
Query: 135 GHRRSQSDIPFGFSHLSXXXXXXXXVKREAATAAEGCRSDGDDFALYDLVNSYMDLDGME 194
GHRRS SDIPFG+S VK E T D AL D+ G++
Sbjct: 138 GHRRSHSDIPFGYSQEHPQMPPVASVKPEVTTIKGHQLEDVAAAALKDM--------GIQ 189
Query: 195 ALNSSEERHEDRDSRASGTRTGSVADSSENEAESHSTPVERKDGGGKSRHCRSLSVDSFI 254
A + S D++ ++SG G + HCRSLSVDSF+
Sbjct: 190 AWSPSGSI--DKEVKSSG-------------------------AGSTTHHCRSLSVDSFM 222
Query: 255 E-KLNFDE-SPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFANGEFTEAEKKKIMANER 312
LNF + E AN +FTE EKKKI+ ++
Sbjct: 223 MGNLNFGVVGQQMSSPPLLTTEVNVGGGEPIGSTASPFAAELANVKFTEDEKKKIVMDKS 282
Query: 313 LAEIALTDPKRVKRILANRQSAARSKERKMRYIQELEHKVQVLQTEATTLSAQLTMLQRD 372
L+EI LTDP+RVKRIL NR SA +SKE+KM+++ EL+ K+QVLQ+E TTL AQ+T++QR+
Sbjct: 283 LSEIVLTDPRRVKRILNNRASATKSKEKKMKHVGELQRKLQVLQSETTTLGAQVTVMQRN 342
Query: 373 STGLATQNNELKIRLQAMEQQAQLRDALNEALTAEVQRLKLATGEITDGRMSKG 426
+ L +QNNELK RLQAM+Q AQL DAL L AE Q L+ EI+D + G
Sbjct: 343 NNELVSQNNELKTRLQAMDQLAQLGDALTSRLAAEAQHLRAVVSEISDPNLPSG 396
>Os03g0336200 Transcription factor RF2b
Length = 329
Score = 175 bits (444), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 90/118 (76%), Positives = 102/118 (86%)
Query: 303 EKKKIMANERLAEIALTDPKRVKRILANRQSAARSKERKMRYIQELEHKVQVLQTEATTL 362
E KK M E+L+E+A DPKR KRILANRQSAARSKERK RYI ELE KVQ LQTEATTL
Sbjct: 115 EAKKAMTPEQLSELAAIDPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTL 174
Query: 363 SAQLTMLQRDSTGLATQNNELKIRLQAMEQQAQLRDALNEALTAEVQRLKLATGEITD 420
SAQLT+ QRD+TGL+ +N ELKIRLQAMEQQAQLRDALN+AL E++RLKLATGE+T+
Sbjct: 175 SAQLTLFQRDTTGLSAENAELKIRLQAMEQQAQLRDALNDALKQELERLKLATGEMTN 232
>Os09g0516200 Transcription factor RF2a. Splice isoform 2
Length = 368
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/120 (70%), Positives = 101/120 (84%)
Query: 299 FTEAEKKKIMANERLAEIALTDPKRVKRILANRQSAARSKERKMRYIQELEHKVQVLQTE 358
+ AE KK ++ +LAE+AL DPKR KRI ANRQSAARSKERKMRYI ELE KVQ LQTE
Sbjct: 148 MSSAEAKKAVSAAKLAELALVDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTE 207
Query: 359 ATTLSAQLTMLQRDSTGLATQNNELKIRLQAMEQQAQLRDALNEALTAEVQRLKLATGEI 418
ATTLSAQL +LQRD++GL T+N+ELK+RLQ MEQQ L+DALN+ L +EVQRLK+ATG++
Sbjct: 208 ATTLSAQLALLQRDTSGLTTENSELKLRLQTMEQQVHLQDALNDTLKSEVQRLKVATGQM 267
>Os12g0162500 Similar to BZIP-like protein
Length = 328
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 84/113 (74%), Positives = 98/113 (86%)
Query: 305 KKIMANERLAEIALTDPKRVKRILANRQSAARSKERKMRYIQELEHKVQVLQTEATTLSA 364
KK M ER+AE+AL DPKR KRILANRQSAARSKERK++Y ELE KVQ LQTEATTLSA
Sbjct: 147 KKAMPAERIAELALIDPKRAKRILANRQSAARSKERKIKYTSELERKVQTLQTEATTLSA 206
Query: 365 QLTMLQRDSTGLATQNNELKIRLQAMEQQAQLRDALNEALTAEVQRLKLATGE 417
QLT+LQRD++GL +N ELK+RLQ+ME+QA+LRDALNEAL EVQRLK+A G+
Sbjct: 207 QLTLLQRDTSGLTAENRELKLRLQSMEEQAKLRDALNEALREEVQRLKIAAGQ 259
>Os11g0160500 BZIP-like protein
Length = 200
Score = 142 bits (358), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 82/114 (71%), Positives = 98/114 (85%)
Query: 305 KKIMANERLAEIALTDPKRVKRILANRQSAARSKERKMRYIQELEHKVQVLQTEATTLSA 364
KK M +RLAE+AL DPKR KRILANRQSAARSKERK++Y ELE KVQ LQTEATTLS
Sbjct: 19 KKAMPADRLAELALLDPKRAKRILANRQSAARSKERKIKYTGELERKVQTLQTEATTLST 78
Query: 365 QLTMLQRDSTGLATQNNELKIRLQAMEQQAQLRDALNEALTAEVQRLKLATGEI 418
QLT+LQRD++GL +N ELK+RLQ+ME+QA+LRDALN+AL EVQRLK+A G++
Sbjct: 79 QLTLLQRDTSGLTAENRELKLRLQSMEEQAKLRDALNDALREEVQRLKIAAGQV 132
>Os01g0756200 Similar to VirE2-interacting protein VIP1
Length = 265
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 62/95 (65%)
Query: 318 LTDPKRVKRILANRQSAARSKERKMRYIQELEHKVQVLQTEATTLSAQLTMLQRDSTGLA 377
+ DPKRVKRILANRQSA RS+ RK++YI ELE V LQ E + LS ++ L + T L
Sbjct: 135 IRDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQNEVSVLSPRVAFLDQQRTILT 194
Query: 378 TQNNELKIRLQAMEQQAQLRDALNEALTAEVQRLK 412
N+ LK R+ A+ Q +DA EAL E++RL+
Sbjct: 195 VGNSHLKQRIAALAQDKIFKDAHQEALRKEIERLR 229
>Os02g0247100 Similar to BZIP protein BZO2H3 (Fragment)
Length = 269
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 60/93 (64%)
Query: 320 DPKRVKRILANRQSAARSKERKMRYIQELEHKVQVLQTEATTLSAQLTMLQRDSTGLATQ 379
DPKRVKRILANRQSA RS+ RK++YI ELE V LQ E + LS ++ L + L
Sbjct: 140 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQMEVSALSPRVAFLDHQRSLLTVG 199
Query: 380 NNELKIRLQAMEQQAQLRDALNEALTAEVQRLK 412
N+ LK R+ A+ Q +DA EAL E++RL+
Sbjct: 200 NSHLKQRIAALAQDKIFKDAHQEALKKEIERLR 232
>Os01g0211800 Similar to VirE2-interacting protein VIP1
Length = 330
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 54/89 (60%)
Query: 314 AEIALTDPKRVKRILANRQSAARSKERKMRYIQELEHKVQVLQTEATTLSAQLTMLQRDS 373
A A DPKRVKRILANRQSA RS+ RK++YI ELE V LQTE + LS ++ L
Sbjct: 182 ASPATVDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSALSPRVAFLDHQR 241
Query: 374 TGLATQNNELKIRLQAMEQQAQLRDALNE 402
+ L N+ LK R+ A+ Q +D E
Sbjct: 242 SLLTLGNSHLKQRIAALAQDKIFKDGGTE 270
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.127 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,417,296
Number of extensions: 346609
Number of successful extensions: 1815
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 1807
Number of HSP's successfully gapped: 16
Length of query: 464
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 360
Effective length of database: 11,605,545
Effective search space: 4177996200
Effective search space used: 4177996200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 158 (65.5 bits)