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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0679500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Transcription factor RF2b.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.01 (0.0575) R2 : 0.419
β1 : -2.68 (0.21) R2dD : 0.224 R2D : 0.207
β2 : 1.39 (0.149) R2dC : 0.129 R2C : 0.0536
β3 : -1.57 (0.254) R2dE : 0.0633 R2E : 0.0527
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.701 (0.127) R2dN8 : 0.0581 R2N8 : 0.0358
σ : 1.05
deviance : 510.36
__
_____
C
peak time of C : 9.29
E
wheather : temperature
threshold : 21.33
memory length : 261
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 19
open length of G : 18.6

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
510.28 1.06 5.01 -2.71 1.39 -1.58 -0.115 -0.277 -0.714 9.31 21.29 255 19 18.7
510.32 1.05 5.01 -2.68 1.39 -1.6 -0.156 -- -0.703 9.3 21.28 255 19 18.7
510.31 1.05 5.01 -2.72 1.39 -1.58 -- -0.344 -0.713 9.3 21.24 256 19 18.7
510.36 1.05 5.01 -2.68 1.39 -1.57 -- -- -0.701 9.29 21.33 261 19 18.6
571.91 1.11 5.01 -2.29 -- -1.32 -- 0.811 -0.596 -- 24.14 955 19.7 17.8
551.71 1.1 5.08 -2.92 1.07 -- -0.422 -- -0.969 8.8 -- -- -- --
552.31 1.1 5.08 -2.94 1.07 -- -- -- -0.969 8.82 -- -- -- --
571.25 1.11 5.01 -2.51 -- -1.35 -- -- -0.653 -- 23.66 926 20.6 17.4
548.22 1.09 4.85 -- 1.03 -2.42 -- -- 0.082 8.81 11.92 47072 19.1 19.4
618.01 1.16 5.11 -2.94 -- -- -- -- -0.961 -- -- -- -- --
779.89 1.31 5 -- 1.07 -- -- -- -0.642 9.03 -- -- -- --
610.37 1.15 4.87 -- -- -2.43 -- -- 0.0635 -- 11.51 47151 19.5 18.7
845.67 1.36 5.03 -- -- -- -- -- -0.635 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 511.50 temperature 20.0 270 > th dose dependent rect. 19 19
14 514.71 temperature 10.0 270 > th dose dependent rect. 22 15
47 517.71 temperature 10.0 270 > th dose dependent rect. 8 6
61 518.83 temperature 25.0 270 > th dose dependent sin 8 NA
65 518.98 temperature 10.0 90 > th dose dependent rect. 9 18
81 519.72 temperature 20.0 90 > th dose dependent rect. 1 14
109 520.86 wind 9.0 270 < th dose dependent rect. 9 5
118 521.13 temperature 25.0 270 > th dose independent rect. 23 15
119 521.15 wind 9.0 270 < th dose dependent rect. 8 7
130 521.48 wind 5.0 270 < th dose independent rect. 9 5
146 521.73 temperature 25.0 270 > th dose independent rect. 19 19
179 522.34 temperature 10.0 270 > th dose dependent rect. 19 8
186 522.52 atmosphere 995.0 90 > th dose dependent rect. 3 7
191 522.59 temperature 20.0 10 > th dose dependent rect. 9 7
230 523.19 temperature 25.0 270 > th dose independent rect. 8 6
263 523.62 temperature 25.0 270 > th dose independent rect. 9 4
269 523.66 wind 1.0 270 > th dose independent rect. 14 18
311 524.12 wind 1.0 14400 < th dose independent rect. 22 7
337 524.34 temperature 30.0 90 < th dose independent rect. 3 8
338 524.41 wind 1.0 270 > th dose independent rect. 13 20
352 524.60 radiation 30.0 90 < th dose independent rect. 16 18
382 525.08 temperature 25.0 270 < th dose independent rect. 3 6
394 525.25 wind 1.0 14400 > th dose independent rect. 22 7
404 525.32 humidity 50.0 90 > th dose independent rect. 16 17
413 525.45 radiation 30.0 90 < th dose independent rect. 3 7
417 525.54 wind 1.0 14400 < th dose dependent rect. 22 10
429 525.69 wind 1.0 14400 < th dose dependent rect. 2 7
431 525.73 atmosphere 995.0 90 > th dose independent rect. 11 16
438 525.79 wind 1.0 14400 < th dose independent rect. 21 12
441 525.80 wind 1.0 14400 < th dose independent rect. 24 3
454 525.89 wind 1.0 14400 < th dose independent rect. 21 10
467 525.93 wind 1.0 14400 < th dose independent rect. 24 5
482 526.05 atmosphere 1000.0 10 > th dose independent rect. 16 18
488 526.09 atmosphere 995.0 270 > th dose dependent rect. 3 5
496 526.20 wind 1.0 14400 > th dose independent rect. 24 5
500 526.23 wind 1.0 14400 > th dose independent rect. 22 9
501 526.23 humidity 60.0 10 > th dose independent rect. 16 18
504 526.26 atmosphere 1005.0 90 > th dose independent rect. 3 6
505 526.27 wind 1.0 14400 < th dose dependent rect. 18 14
519 526.33 temperature 20.0 4320 > th dose dependent rect. 2 1
522 526.35 humidity 80.0 270 > th dose independent rect. 3 6
533 526.45 radiation 40.0 270 < th dose dependent rect. 3 7
541 526.49 wind 1.0 14400 < th dose dependent rect. 1 4
571 526.66 wind 1.0 14400 < th dose dependent sin 9 NA
607 526.84 atmosphere 995.0 270 > th dose independent rect. 8 7
635 526.96 temperature 10.0 4320 > th dose dependent rect. 2 1
655 527.03 temperature 30.0 4320 < th dose dependent rect. 1 2
659 527.04 radiation 40.0 270 < th dose independent rect. 13 20
662 527.04 atmosphere 995.0 270 > th dose dependent rect. 1 8
677 527.11 wind 7.0 270 < th dose independent rect. 22 15
700 527.20 wind 1.0 14400 < th dose independent sin 10 NA
709 527.22 temperature 30.0 270 < th dose dependent rect. 1 17
716 527.24 temperature 10.0 90 > th dose dependent rect. 9 21
744 527.38 temperature 30.0 90 < th dose independent rect. 3 16
759 527.43 wind 9.0 270 < th dose dependent rect. 8 19
761 527.44 atmosphere 995.0 10 > th dose dependent rect. 16 18
781 527.52 humidity 50.0 4320 > th dose independent rect. 18 17
801 527.62 temperature 20.0 14400 < th dose dependent rect. 6 1
807 527.65 wind 7.0 90 < th dose independent rect. 10 17
828 527.71 precipitation 0.1 270 < th dose independent rect. 8 6
832 527.71 precipitation 0.1 270 < th dose dependent rect. 8 6
841 527.76 temperature 15.0 30 > th dose dependent rect. 20 8
843 527.77 temperature 20.0 30 > th dose independent rect. 20 8
847 527.77 wind 9.0 30 < th dose dependent rect. 10 18
860 527.80 temperature 10.0 270 > th dose dependent sin 6 NA
897 527.92 temperature 10.0 270 > th dose independent rect. 8 6
899 527.92 atmosphere 1015.0 270 < th dose independent rect. 8 6
900 527.92 temperature 10.0 270 > th dose independent rect. 14 18
929 528.02 radiation 40.0 270 < th dose independent rect. 3 15
932 528.02 precipitation 0.1 270 < th dose independent rect. 14 18
938 528.02 precipitation 0.1 270 < th dose dependent rect. 14 18
949 528.08 humidity 50.0 4320 > th dose independent rect. 5 6
953 528.09 temperature 25.0 270 < th dose independent sin 6 NA
973 528.13 radiation 1.0 270 > th dose independent rect. 8 6
975 528.13 wind 9.0 270 < th dose independent rect. 14 18
986 528.18 wind 1.0 14400 > th dose independent sin 10 NA
987 528.18 temperature 25.0 4320 < th dose independent rect. 19 8
994 528.19 temperature 30.0 270 < th dose dependent rect. 1 9