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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0211800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to VirE2-interacting protein VIP1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.66 (0.0492) R2 : 0.179
β1 : -0.869 (0.18) R2dD : 0.0452 R2D : 0.00783
β2 : 0.778 (0.118) R2dC : 0.0766 R2C : 0.0656
β3 : 0.852 (0.141) R2dE : 0.0764 R2E : 0.0226
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.508 (0.11) R2dN8 : 0.056 R2N8 : -0.0107
σ : 0.906
deviance : 378.72
__
_____
C
peak time of C : 9.92
E
wheather : radiation
threshold : 24.28
memory length : 1522
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
374.89 0.91 3.67 -0.91 0.763 0.889 -1 -0.388 -0.534 9.74 22.76 1520 -- --
375.21 0.902 3.66 -0.862 0.768 0.884 -1.02 -- -0.53 9.74 22.69 1522 -- --
378.69 0.906 3.67 -0.958 0.761 0.902 -- -0.384 -0.539 9.81 23.12 1522 -- --
378.72 0.906 3.66 -0.869 0.778 0.852 -- -- -0.508 9.92 24.28 1522 -- --
411.78 0.945 3.69 -0.936 -- 0.969 -- -0.446 -0.535 -- 23.42 1581 -- --
404.86 0.943 3.61 -0.642 0.776 -- -1.09 -- -0.271 9.78 -- -- -- --
409.3 0.947 3.61 -0.682 0.778 -- -- -- -0.272 10 -- -- -- --
412.16 0.946 3.68 -0.883 -- 0.967 -- -- -0.512 -- 23.42 1592 -- --
397.5 0.929 3.63 -- 0.774 0.891 -- -- -0.398 10.2 38 1547 -- --
445.76 0.987 3.63 -0.691 -- -- -- -- -0.272 -- -- -- -- --
421.56 0.96 3.59 -- 0.781 -- -- -- -0.196 10.1 -- -- -- --
426.2 0.962 3.69 -- -- 0.982 -- -- -0.44 -- 19.91 1624 -- --
458.37 0.999 3.61 -- -- -- -- -- -0.196 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 371.00 radiation 1.0 10 > th dose dependent rect. 12 22
3 374.04 radiation 20.0 1440 > th dose independent rect. 9 1
4 374.08 radiation 40.0 10 < th dose independent sin 12 NA
5 374.70 radiation 10.0 4320 > th dose independent rect. 7 2
7 375.04 radiation 20.0 1440 > th dose independent rect. 13 21
9 375.50 precipitation 0.1 43200 > th dose independent rect. 9 1
10 375.50 precipitation 0.1 43200 < th dose independent rect. 9 1
11 375.50 precipitation 0.1 43200 > th dose dependent rect. 9 1
12 375.50 precipitation 0.1 43200 < th dose dependent rect. 9 1
14 375.58 radiation 20.0 1440 < th dose independent rect. 9 1
35 376.02 radiation 40.0 30 < th dose independent rect. 10 18
41 376.34 radiation 10.0 1440 > th dose dependent rect. 9 1
43 376.37 radiation 20.0 1440 > th dose independent rect. 8 23
45 376.43 wind 1.0 43200 < th dose dependent rect. 3 4
46 376.44 radiation 20.0 1440 > th dose independent rect. 8 9
63 376.50 radiation 20.0 1440 > th dose independent no NA NA
65 376.50 radiation 20.0 1440 > th dose independent rect. 6 11
156 376.51 wind 1.0 43200 < th dose dependent rect. 4 2
169 376.54 radiation 10.0 1440 > th dose dependent rect. 13 21
189 376.72 radiation 30.0 4320 < th dose dependent rect. 8 1
190 376.73 radiation 30.0 4320 < th dose dependent rect. 7 3
191 376.74 radiation 10.0 43200 > th dose independent rect. 10 4
193 376.75 radiation 30.0 1440 < th dose independent rect. 12 22
195 376.78 radiation 40.0 1440 > th dose independent rect. 14 19
196 376.82 radiation 20.0 1440 > th dose independent sin 0 NA
199 376.84 wind 7.0 43200 < th dose independent rect. 21 1
202 376.87 wind 5.0 43200 > th dose dependent rect. 21 1
252 377.25 radiation 20.0 1440 > th dose independent sin 13 NA
254 377.31 wind 1.0 43200 > th dose independent rect. 17 1
263 377.44 radiation 40.0 1440 > th dose independent sin 13 NA
272 377.57 wind 7.0 43200 > th dose independent rect. 21 1
279 377.63 humidity 80.0 43200 > th dose dependent rect. 12 1
282 377.64 radiation 30.0 1440 < th dose independent sin 13 NA
286 377.69 radiation 20.0 1440 < th dose independent rect. 8 9
288 377.71 radiation 30.0 4320 < th dose dependent rect. 2 8
297 377.73 radiation 40.0 1440 < th dose dependent rect. 13 21
305 377.74 radiation 30.0 4320 < th dose dependent rect. 19 15
309 377.78 radiation 10.0 43200 > th dose independent rect. 10 1
310 377.79 temperature 20.0 43200 > th dose independent rect. 17 3
312 377.79 radiation 20.0 1440 > th dose dependent sin 13 NA
316 377.84 radiation 20.0 1440 < th dose independent rect. 8 21
317 377.85 radiation 20.0 1440 < th dose independent rect. 8 12
346 377.88 radiation 20.0 1440 < th dose independent rect. 8 17
361 377.97 temperature 20.0 43200 < th dose independent rect. 17 4
366 377.98 radiation 1.0 4320 > th dose dependent rect. 7 3
369 378.00 temperature 20.0 43200 < th dose independent rect. 18 2
387 378.08 radiation 20.0 1440 < th dose independent rect. 2 15
388 378.08 radiation 20.0 1440 < th dose independent rect. 24 17
400 378.10 radiation 20.0 1440 < th dose independent rect. 4 13
406 378.10 radiation 20.0 1440 < th dose independent rect. 19 21
448 378.16 radiation 20.0 1440 < th dose independent rect. 14 2
467 378.22 radiation 20.0 1440 < th dose independent rect. 2 18
469 378.22 radiation 20.0 1440 < th dose independent rect. 24 20
482 378.24 radiation 20.0 1440 < th dose independent rect. 4 16
501 378.25 radiation 20.0 1440 < th dose independent no NA NA
502 378.25 wind 1.0 43200 < th dose independent rect. 17 1
535 378.27 radiation 30.0 1440 < th dose independent sin 18 NA
553 378.28 radiation 20.0 1440 < th dose independent sin 23 NA
563 378.28 radiation 10.0 1440 > th dose dependent rect. 8 9
602 378.34 radiation 10.0 4320 > th dose independent sin 9 NA
606 378.34 wind 9.0 43200 < th dose dependent rect. 4 2
629 378.36 radiation 40.0 1440 < th dose dependent rect. 7 10
742 378.43 radiation 10.0 1440 > th dose dependent no NA NA
823 378.43 radiation 40.0 1440 < th dose dependent rect. 7 23
839 378.45 radiation 40.0 1440 < th dose dependent rect. 2 15
840 378.45 radiation 40.0 1440 < th dose dependent rect. 24 17
862 378.47 temperature 25.0 43200 < th dose dependent rect. 10 1
867 378.47 radiation 40.0 1440 < th dose dependent rect. 19 22
872 378.49 temperature 30.0 14400 > th dose independent rect. 10 1
888 378.50 wind 1.0 43200 > th dose independent rect. 3 4
920 378.51 radiation 40.0 1440 < th dose dependent rect. 7 13
939 378.52 radiation 10.0 1440 > th dose dependent rect. 14 2
963 378.53 wind 1.0 43200 > th dose dependent rect. 1 5
974 378.54 radiation 40.0 1440 > th dose independent rect. 14 2