Os09g0516200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transcription factor RF2a. Splice isoform 2.
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Os09g0516200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transcription factor RF2a. Splice isoform 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.42 | 0.217 | 10.3 | 0.734 | 0.0675 | -0.439 | 0.0875 | 0.169 | 0.0634 | 10.1 | 24.1 | 829 | -- | -- |
| 21.46 | 0.216 | 10.3 | 0.758 | 0.0656 | -0.463 | 0.123 | -- | 0.0673 | 10.3 | 24 | 838 | -- | -- |
| 21.45 | 0.216 | 10.3 | 0.732 | 0.0665 | -0.438 | -- | 0.196 | 0.062 | 9.83 | 24.11 | 829 | -- | -- |
| 21.52 | 0.216 | 10.3 | 0.761 | 0.0668 | -0.464 | -- | -- | 0.0699 | 9.86 | 24 | 831 | -- | -- |
| 21.7 | 0.217 | 10.3 | 0.733 | -- | -0.398 | -- | 0.252 | 0.0667 | -- | 24.1 | 840 | -- | -- |
| 24.42 | 0.232 | 10.3 | 0.887 | 0.00384 | -- | 0.158 | -- | 0.156 | 12.3 | -- | -- | -- | -- |
| 24.51 | 0.232 | 10.3 | 0.893 | 0.0225 | -- | -- | -- | 0.156 | 6.8 | -- | -- | -- | -- |
| 21.78 | 0.217 | 10.3 | 0.773 | -- | -0.433 | -- | -- | 0.0731 | -- | 23.97 | 845 | -- | -- |
| 27.64 | 0.245 | 10.4 | -- | 0.0262 | -0.681 | -- | -- | -0.146 | 8.74 | 40.58 | 47520 | -- | -- |
| 24.53 | 0.231 | 10.3 | 0.893 | -- | -- | -- | -- | 0.157 | -- | -- | -- | -- | -- |
| 45.52 | 0.316 | 10.3 | -- | 0.036 | -- | -- | -- | 0.057 | 5.26 | -- | -- | -- | -- |
| 27.68 | 0.245 | 10.4 | -- | -- | -0.68 | -- | -- | -0.146 | -- | 55.05 | 47520 | -- | -- |
| 45.59 | 0.315 | 10.3 | -- | -- | -- | -- | -- | 0.0577 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.92 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 3 |
| 12 | 19.37 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 19 |
| 40 | 19.67 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 14 |
| 57 | 19.81 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 10 |
| 111 | 20.08 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 6 |
| 113 | 20.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 122 | 20.11 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 127 | 20.12 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 2 |
| 133 | 20.14 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 7 |
| 143 | 20.16 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 162 | 20.19 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 9 |
| 190 | 20.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 11 |
| 219 | 20.27 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 267 | 20.35 | temperature | 25 | 10 | > th | dose independent | rect. | 1 | 19 |
| 279 | 20.36 | temperature | 25 | 720 | < th | dose dependent | sin | 6 | NA |
| 296 | 20.37 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 378 | 20.46 | temperature | 25 | 10 | > th | dose independent | rect. | 1 | 10 |
| 480 | 20.56 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 21 |
| 529 | 20.61 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 19 |
| 532 | 20.61 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 589 | 20.66 | humidity | 50 | 270 | > th | dose dependent | rect. | 16 | 11 |
| 626 | 20.70 | temperature | 25 | 10 | < th | dose independent | rect. | 24 | 14 |
| 646 | 20.72 | humidity | 50 | 270 | > th | dose independent | rect. | 7 | 21 |
| 774 | 20.81 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 7 |
| 856 | 20.87 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 3 |
| 867 | 20.89 | temperature | 25 | 30 | > th | dose independent | rect. | 4 | 5 |
| 902 | 20.91 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 20 |
| 930 | 20.95 | humidity | 70 | 270 | > th | dose independent | rect. | 16 | 11 |
| 952 | 20.96 | humidity | 50 | 270 | > th | dose dependent | rect. | 8 | 19 |
| 956 | 20.97 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 970 | 20.98 | humidity | 50 | 270 | > th | dose independent | rect. | 8 | 19 |