Os01g0756200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to VirE2-interacting protein VIP1.
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Os01g0756200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to VirE2-interacting protein VIP1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 135.38 | 0.547 | 3.04 | -0.281 | 0.405 | 2.01 | -0.291 | -6.97 | 0.0178 | 5.48 | 94.76 | 220 | 13.4 | -- |
| 150.17 | 0.571 | 3.04 | -0.289 | 0.437 | 3.07 | -0.631 | -- | -0.0158 | 4.87 | 94.89 | 217 | 12.6 | -- |
| 135.57 | 0.542 | 3.05 | -0.28 | 0.399 | 1.98 | -- | -7.01 | 0.0174 | 5.47 | 94.78 | 215 | 13.5 | -- |
| 149.68 | 0.57 | 3.03 | -0.367 | 0.332 | 2.94 | -- | -- | 0.0258 | 5.62 | 94.76 | 199 | 11.6 | -- |
| 143.75 | 0.558 | 3.05 | -0.268 | -- | 2.21 | -- | -7.09 | 0.0339 | -- | 94.79 | 219 | 13.5 | -- |
| 170.93 | 0.613 | 3.05 | -0.354 | 0.519 | -- | -1.06 | -- | -0.0602 | 4.93 | -- | -- | -- | -- |
| 173.8 | 0.617 | 3.04 | -0.351 | 0.513 | -- | -- | -- | -0.0549 | 5.01 | -- | -- | -- | -- |
| 153.89 | 0.578 | 3.01 | -0.338 | -- | 2.91 | -- | -- | 0.0936 | -- | 94.65 | 199 | 10.7 | -- |
| 152.7 | 0.576 | 3.03 | -- | 0.326 | 3.04 | -- | -- | 0.0664 | 6.03 | 94.8 | 199 | 11.7 | -- |
| 187.63 | 0.64 | 3.05 | -0.332 | -- | -- | -- | -- | -0.0418 | -- | -- | -- | -- | -- |
| 177.05 | 0.622 | 3.04 | -- | 0.507 | -- | -- | -- | -0.0158 | 5.04 | -- | -- | -- | -- |
| 156.97 | 0.584 | 3.02 | -- | -- | 3.01 | -- | -- | 0.0998 | -- | 94.67 | 199 | 10.9 | -- |
| 190.55 | 0.644 | 3.04 | -- | -- | -- | -- | -- | -0.00489 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 144.53 | wind | 1.0 | 270 | < th | dose dependent | rect. | 24 | 1 |
| 2 | 145.02 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 3 | 145.02 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 4 | 150.49 | wind | 1.0 | 270 | < th | dose independent | rect. | 23 | 2 |
| 6 | 151.60 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 2 |
| 7 | 151.60 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 2 |
| 8 | 151.69 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 9 | 151.69 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 4 |
| 10 | 151.69 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 4 |
| 13 | 151.75 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 23 | 152.26 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 35 | 152.68 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 23 | 2 |
| 37 | 152.78 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 1 | 1 |
| 70 | 154.46 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 20 | 3 |
| 72 | 154.65 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 24 | 4 |
| 73 | 154.81 | wind | 1.0 | 90 | < th | dose independent | rect. | 10 | 19 |
| 81 | 155.09 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 24 | 5 |
| 82 | 155.20 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 20 | 4 |
| 89 | 155.33 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 23 | 3 |
| 92 | 155.39 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 1 | 1 |
| 100 | 155.58 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 24 | 6 |
| 103 | 155.71 | wind | 1.0 | 90 | < th | dose independent | rect. | 7 | 22 |
| 114 | 155.88 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 21 | 6 |
| 123 | 156.20 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 20 | 1 |
| 132 | 156.32 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 24 | 8 |
| 136 | 156.51 | wind | 1.0 | 90 | < th | dose independent | rect. | 23 | 6 |
| 162 | 156.80 | wind | 1.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 177 | 156.94 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 24 | 19 |
| 181 | 156.96 | wind | 1.0 | 90 | < th | dose independent | rect. | 3 | 23 |
| 195 | 157.03 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 12 | 15 |
| 207 | 157.17 | humidity | 90.0 | 270 | > th | dose dependent | sin | 14 | NA |
| 227 | 157.34 | wind | 1.0 | 90 | > th | dose independent | no | NA | NA |
| 235 | 157.40 | wind | 1.0 | 90 | < th | dose independent | rect. | 10 | 1 |
| 245 | 157.52 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 246 | 157.52 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 250 | 157.54 | wind | 1.0 | 30 | > th | dose independent | rect. | 11 | 23 |
| 274 | 157.75 | temperature | 20.0 | 270 | < th | dose independent | rect. | 9 | 1 |
| 312 | 158.05 | wind | 1.0 | 90 | > th | dose independent | sin | 12 | NA |
| 317 | 158.09 | wind | 1.0 | 90 | < th | dose independent | rect. | 23 | 13 |
| 320 | 158.12 | humidity | 90.0 | 30 | > th | dose independent | rect. | 24 | 6 |
| 329 | 158.19 | humidity | 90.0 | 10 | > th | dose dependent | sin | 7 | NA |
| 342 | 158.30 | temperature | 20.0 | 10 | > th | dose independent | rect. | 1 | 3 |
| 365 | 158.55 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 3 | 5 |
| 386 | 158.56 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 3 | 5 |
| 407 | 158.57 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 3 | 3 |
| 413 | 158.57 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 3 | 3 |
| 421 | 158.60 | wind | 1.0 | 90 | > th | dose independent | rect. | 3 | 23 |
| 423 | 158.61 | wind | 1.0 | 90 | < th | dose independent | sin | 13 | NA |
| 468 | 158.83 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 22 | 8 |
| 493 | 158.89 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 520 | 158.97 | wind | 1.0 | 90 | < th | dose independent | no | NA | NA |
| 540 | 159.03 | temperature | 20.0 | 10 | > th | dose independent | rect. | 1 | 5 |
| 547 | 159.05 | wind | 1.0 | 270 | < th | dose independent | rect. | 10 | 16 |
| 550 | 159.07 | humidity | 90.0 | 270 | > th | dose independent | rect. | 1 | 1 |
| 569 | 159.14 | temperature | 20.0 | 270 | > th | dose independent | rect. | 1 | 1 |
| 659 | 159.52 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 666 | 159.55 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 675 | 159.59 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 690 | 159.66 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 20 | 4 |
| 708 | 159.75 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 22 | 21 |
| 717 | 159.78 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 20 | 4 |
| 728 | 159.80 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 734 | 159.81 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 9 | 5 |
| 754 | 159.84 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 9 | 5 |
| 799 | 159.99 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 9 | 5 |
| 807 | 160.03 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 818 | 160.03 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 17 | 13 |
| 861 | 160.15 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 879 | 160.20 | wind | 3.0 | 90 | < th | dose dependent | rect. | 10 | 1 |
| 980 | 160.44 | wind | 1.0 | 30 | < th | dose independent | rect. | 4 | 1 |