BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0756200 Os01g0756200|AK108553
(265 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0756200 Similar to VirE2-interacting protein VIP1 437 e-123
Os02g0247100 Similar to BZIP protein BZO2H3 (Fragment) 203 9e-53
Os01g0211800 Similar to VirE2-interacting protein VIP1 188 4e-48
Os12g0162500 Similar to BZIP-like protein 94 1e-19
Os07g0679500 Similar to Transcription factor RF2b 92 4e-19
Os09g0516200 Transcription factor RF2a. Splice isoform 2 92 5e-19
Os03g0336200 Transcription factor RF2b 91 6e-19
Os08g0543900 Similar to Transcription factor RF2b 89 3e-18
Os03g0127500 Eukaryotic transcription factor, DNA-binding d... 86 2e-17
Os10g0531900 Similar to BZIP-like protein 86 3e-17
Os11g0218000 Eukaryotic transcription factor, DNA-binding d... 86 4e-17
Os02g0538900 Eukaryotic transcription factor, DNA-binding d... 83 2e-16
Os11g0160500 BZIP-like protein 82 4e-16
Os12g0194600 Basic-leucine zipper (bZIP) transcription fact... 80 2e-15
Os04g0181300 67 1e-11
>Os01g0756200 Similar to VirE2-interacting protein VIP1
Length = 265
Score = 437 bits (1124), Expect = e-123, Method: Compositional matrix adjust.
Identities = 223/265 (84%), Positives = 223/265 (84%)
Query: 1 MAQLPPKIPVAAPGHHQHXXXXXXXXXXXXXXXXXXXXXXRRGAHRRSLSDSVAFVEVAP 60
MAQLPPKIPVAAPGHHQH RRGAHRRSLSDSVAFVEVAP
Sbjct: 1 MAQLPPKIPVAAPGHHQHWASAGGAGDAAWADEFAEFAASRRGAHRRSLSDSVAFVEVAP 60
Query: 61 AGCGAGGEFDRLDDDQLMSMFPDEXXXXXXXXXXXXXXXXXXXXKHAAAQSDDGQHAAGE 120
AGCGAGGEFDRLDDDQLMSMFPDE KHAAAQSDDGQHAAGE
Sbjct: 61 AGCGAGGEFDRLDDDQLMSMFPDEGGSSAPGSDNGGSDSDGGGDKHAAAQSDDGQHAAGE 120
Query: 121 PTQEQAAATSPTELIRDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQNEVSVLS 180
PTQEQAAATSPTELIRDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQNEVSVLS
Sbjct: 121 PTQEQAAATSPTELIRDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQNEVSVLS 180
Query: 181 PRVAFLDQQRTILTVGNSHLKQRIAALAQDKIFKDAHQEALRKEIERLRQVYQQQNTKLS 240
PRVAFLDQQRTILTVGNSHLKQRIAALAQDKIFKDAHQEALRKEIERLRQVYQQQNTKLS
Sbjct: 181 PRVAFLDQQRTILTVGNSHLKQRIAALAQDKIFKDAHQEALRKEIERLRQVYQQQNTKLS 240
Query: 241 GGLAADHAHVHGGPPPVRAEKELMS 265
GGLAADHAHVHGGPPPVRAEKELMS
Sbjct: 241 GGLAADHAHVHGGPPPVRAEKELMS 265
>Os02g0247100 Similar to BZIP protein BZO2H3 (Fragment)
Length = 269
Score = 203 bits (517), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 121/198 (61%), Positives = 128/198 (64%), Gaps = 44/198 (22%)
Query: 68 EFDRLDDDQLMSMFPDEXXXXXXXXXXXXXXXXXXXXKHAAAQSDDG--QHAAGEP---- 121
EFDRLDD+QLMSMF D A A SD G + AGE
Sbjct: 69 EFDRLDDEQLMSMFSD---------------------VEAPAVSDGGGERGPAGEAHLMD 107
Query: 122 ---TQEQAAATSPTELIR--------------DPKRVKRILANRQSAQRSRVRKLQYISE 164
+ ATSP DPKRVKRILANRQSAQRSRVRKLQYISE
Sbjct: 108 MGDGDDGMGATSPAGAGAMAAAAAAAAADGIADPKRVKRILANRQSAQRSRVRKLQYISE 167
Query: 165 LERSVTTLQNEVSVLSPRVAFLDQQRTILTVGNSHLKQRIAALAQDKIFKDAHQEALRKE 224
LERSVTTLQ EVS LSPRVAFLD QR++LTVGNSHLKQRIAALAQDKIFKDAHQEAL+KE
Sbjct: 168 LERSVTTLQMEVSALSPRVAFLDHQRSLLTVGNSHLKQRIAALAQDKIFKDAHQEALKKE 227
Query: 225 IERLRQVYQQQNTKLSGG 242
IERLRQVY QQ K +GG
Sbjct: 228 IERLRQVYHQQQIKATGG 245
>Os01g0211800 Similar to VirE2-interacting protein VIP1
Length = 330
Score = 188 bits (477), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 112/195 (57%), Positives = 128/195 (65%), Gaps = 15/195 (7%)
Query: 41 RRGAHRRSLSDSVAFVE-VAPAGCGAGG-EFDRLDDDQLMSMFPDEXXXXXXXXXXXXXX 98
+RGAHRRS+SDSVAF++ V+ G G +FDRLDDDQLMSMF D+
Sbjct: 85 KRGAHRRSVSDSVAFLDPVSDDNAGVGAHDFDRLDDDQLMSMFSDDLQPPPPQQQPAAPA 144
Query: 99 ---------XXXXXXKHAAAQSDDGQHAAGEPTQEQAAATSPTELIRDPKRVKRILANRQ 149
K ++D+ Q T Q A SP + DPKRVKRILANRQ
Sbjct: 145 ASASSPSDHNSMNDEKQDKGETDEAQSECDGATPGQPA--SPATV--DPKRVKRILANRQ 200
Query: 150 SAQRSRVRKLQYISELERSVTTLQNEVSVLSPRVAFLDQQRTILTVGNSHLKQRIAALAQ 209
SAQRSRVRKLQYISELERSVT+LQ EVS LSPRVAFLD QR++LT+GNSHLKQRIAALAQ
Sbjct: 201 SAQRSRVRKLQYISELERSVTSLQTEVSALSPRVAFLDHQRSLLTLGNSHLKQRIAALAQ 260
Query: 210 DKIFKDAHQEALRKE 224
DKIFKD E +E
Sbjct: 261 DKIFKDGGTEEGDRE 275
>Os12g0162500 Similar to BZIP-like protein
Length = 328
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 69/111 (62%), Gaps = 4/111 (3%)
Query: 137 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQNEVSVLSPRVAFLDQQRTILTVG 196
DPKR KRILANRQSA RS+ RK++Y SELER V TLQ E + LS ++ L + + LT
Sbjct: 162 DPKRAKRILANRQSAARSKERKIKYTSELERKVQTLQTEATTLSAQLTLLQRDTSGLTAE 221
Query: 197 NSHLKQRIAALAQDKIFKDAHQEALRKEIERLR----QVYQQQNTKLSGGL 243
N LK R+ ++ + +DA EALR+E++RL+ Q +GGL
Sbjct: 222 NRELKLRLQSMEEQAKLRDALNEALREEVQRLKIAAGQAPNMNGNPFNGGL 272
>Os07g0679500 Similar to Transcription factor RF2b
Length = 330
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 64/93 (68%)
Query: 137 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQNEVSVLSPRVAFLDQQRTILTVG 196
DPKR KRILANRQSA RS+ RK +YI+ELER V TLQ E + LS ++ + T L+
Sbjct: 123 DPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLFQRDTTGLSAE 182
Query: 197 NSHLKQRIAALAQDKIFKDAHQEALRKEIERLR 229
N+ LK R+ A+ Q +DA +AL++E+ERL+
Sbjct: 183 NAELKIRLQAMEQQAQLRDALNDALKQEVERLK 215
>Os09g0516200 Transcription factor RF2a. Splice isoform 2
Length = 368
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 101/217 (46%), Gaps = 29/217 (13%)
Query: 41 RRGAHRRSLSDSVAF---VEVAPAGCGAGGEFDRLDDDQLMSMFPD-EXXXXXXXXXXXX 96
R HRR+ S+ ++ +++ AG G G +D++L SMF D E
Sbjct: 46 RNPGHRRAHSEILSLPEDLDLCAAGGGDGPSLSDENDEELFSMFLDVEKLNSTCGASSEA 105
Query: 97 XXXXXXXXKHAA------------------------AQSDDGQHAAGEPTQEQAAATSPT 132
H A + +G +A AA +
Sbjct: 106 EAESSSAAAHGARPKHQHSLSMDESMSIKAEELVGASPGTEGMSSAEAKKAVSAAKLAEL 165
Query: 133 ELIRDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQNEVSVLSPRVAFLDQQRTI 192
L+ DPKR KRI ANRQSA RS+ RK++YI+ELER V TLQ E + LS ++A L + +
Sbjct: 166 ALV-DPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLALLQRDTSG 224
Query: 193 LTVGNSHLKQRIAALAQDKIFKDAHQEALRKEIERLR 229
LT NS LK R+ + Q +DA + L+ E++RL+
Sbjct: 225 LTTENSELKLRLQTMEQQVHLQDALNDTLKSEVQRLK 261
>Os03g0336200 Transcription factor RF2b
Length = 329
Score = 91.3 bits (225), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 64/93 (68%)
Query: 137 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQNEVSVLSPRVAFLDQQRTILTVG 196
DPKR KRILANRQSA RS+ RK +YI+ELER V TLQ E + LS ++ + T L+
Sbjct: 132 DPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLFQRDTTGLSAE 191
Query: 197 NSHLKQRIAALAQDKIFKDAHQEALRKEIERLR 229
N+ LK R+ A+ Q +DA +AL++E+ERL+
Sbjct: 192 NAELKIRLQAMEQQAQLRDALNDALKQELERLK 224
>Os08g0543900 Similar to Transcription factor RF2b
Length = 464
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 69/110 (62%), Gaps = 1/110 (0%)
Query: 135 IRDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQNEVSVLSPRVAFLDQQRTILT 194
+ DPKRVKRILANRQSA RS+ RK++YI ELE V LQ E + LS ++ L + T L
Sbjct: 318 LTDPKRVKRILANRQSAARSKERKMRYIQELEHKVQVLQTEATTLSAQLTMLQRDSTGLA 377
Query: 195 VGNSHLKQRIAALAQDKIFKDAHQEALRKEIERLRQVYQQ-QNTKLSGGL 243
N+ LK R+ A+ Q +DA EAL E++RL+ + + ++S GL
Sbjct: 378 TQNNELKIRLQAMEQQAQLRDALNEALTAEVQRLKLATGEITDGRMSKGL 427
>Os03g0127500 Eukaryotic transcription factor, DNA-binding domain containing
protein
Length = 426
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 64/95 (67%)
Query: 135 IRDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQNEVSVLSPRVAFLDQQRTILT 194
+ DPKRVKR+LANRQSA RS+ RK++YI+ELE+ V LQ+E + LS ++ + + L
Sbjct: 273 LADPKRVKRVLANRQSAARSKERKMRYIAELEQKVQILQSEATNLSAQLTMMQRDSAGLA 332
Query: 195 VGNSHLKQRIAALAQDKIFKDAHQEALRKEIERLR 229
N+ LK R+ A+ Q +DA EAL E++RL+
Sbjct: 333 TQNNELKFRLHAMEQQAQLRDALNEALTTEVQRLK 367
>Os10g0531900 Similar to BZIP-like protein
Length = 400
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 64/95 (67%)
Query: 135 IRDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQNEVSVLSPRVAFLDQQRTILT 194
+ DPKRVKR+LANRQSA RS+ R+++YI+ELE+ V LQ E + LS ++ L + + +
Sbjct: 244 LADPKRVKRVLANRQSAARSKERRMRYIAELEQKVQILQTEATTLSAQLTLLQRDSSGMA 303
Query: 195 VGNSHLKQRIAALAQDKIFKDAHQEALRKEIERLR 229
N+ LK R+ ++ Q +DA EAL E++RL+
Sbjct: 304 TQNNELKFRLQSMEQQAQLRDALNEALTAEVQRLK 338
>Os11g0218000 Eukaryotic transcription factor, DNA-binding domain containing
protein
Length = 364
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 59/87 (67%)
Query: 146 ANRQSAQRSRVRKLQYISELERSVTTLQNEVSVLSPRVAFLDQQRTILTVGNSHLKQRIA 205
A +Q AQRSRVRKLQYI+ELER V LQ+E +S + FL QQ +L + N LKQR+
Sbjct: 227 AKQQYAQRSRVRKLQYIAELERKVQALQSEGIDVSAEMEFLSQQNIMLDLENKALKQRLE 286
Query: 206 ALAQDKIFKDAHQEALRKEIERLRQVY 232
+LAQ+++ K QE +EI RLR +Y
Sbjct: 287 SLAQEQLIKRFQQEMFEREIGRLRSLY 313
>Os02g0538900 Eukaryotic transcription factor, DNA-binding domain containing
protein
Length = 326
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 61/84 (72%)
Query: 148 RQSAQRSRVRKLQYISELERSVTTLQNEVSVLSPRVAFLDQQRTILTVGNSHLKQRIAAL 207
R+S QRSRVRKLQYI++LER+V +LQN + L+ RVA L Q R L++ N L+++I +L
Sbjct: 190 RRSGQRSRVRKLQYIADLERTVDSLQNIGADLAVRVASLFQLRNALSMENKQLRRQITSL 249
Query: 208 AQDKIFKDAHQEALRKEIERLRQV 231
Q K+ KD + L+KE ERL+Q+
Sbjct: 250 QQAKLIKDGQTQMLKKETERLKQL 273
>Os11g0160500 BZIP-like protein
Length = 200
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 70/113 (61%), Gaps = 4/113 (3%)
Query: 135 IRDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQNEVSVLSPRVAFLDQQRTILT 194
+ DPKR KRILANRQSA RS+ RK++Y ELER V TLQ E + LS ++ L + + LT
Sbjct: 32 LLDPKRAKRILANRQSAARSKERKIKYTGELERKVQTLQTEATTLSTQLTLLQRDTSGLT 91
Query: 195 VGNSHLKQRIAALAQDKIFKDAHQEALRKEIERLR----QVYQQQNTKLSGGL 243
N LK R+ ++ + +DA +ALR+E++RL+ QV +GGL
Sbjct: 92 AENRELKLRLQSMEEQAKLRDALNDALREEVQRLKIAAGQVPNMNGNSFNGGL 144
>Os12g0194600 Basic-leucine zipper (bZIP) transcription factor domain containing
protein
Length = 150
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 56/85 (65%)
Query: 148 RQSAQRSRVRKLQYISELERSVTTLQNEVSVLSPRVAFLDQQRTILTVGNSHLKQRIAAL 207
RQ AQRSRVRKLQYI+ELER V LQ E +S + FL QQ +L + N LKQR+ +L
Sbjct: 15 RQYAQRSRVRKLQYIAELERRVQALQTEGVEVSAEMDFLGQQNIMLDLENKALKQRLESL 74
Query: 208 AQDKIFKDAHQEALRKEIERLRQVY 232
+Q+ + K QE +EI RLR ++
Sbjct: 75 SQEHLIKRFQQEMFEREIGRLRSLF 99
>Os04g0181300
Length = 426
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 58/101 (57%)
Query: 134 LIRDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQNEVSVLSPRVAFLDQQRTIL 193
++ DP+RVKRIL NR SA +S+ +K++++ EL+R + LQ+E + L +V + + L
Sbjct: 287 VLTDPRRVKRILNNRASATKSKEKKMKHVGELQRKLQVLQSETTTLGAQVTVMQRNNNEL 346
Query: 194 TVGNSHLKQRIAALAQDKIFKDAHQEALRKEIERLRQVYQQ 234
N+ LK R+ A+ Q DA L E + LR V +
Sbjct: 347 VSQNNELKTRLQAMDQLAQLGDALTSRLAAEAQHLRAVVSE 387
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.129 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,207,316
Number of extensions: 269063
Number of successful extensions: 1228
Number of sequences better than 1.0e-10: 15
Number of HSP's gapped: 1219
Number of HSP's successfully gapped: 15
Length of query: 265
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 166
Effective length of database: 11,866,615
Effective search space: 1969858090
Effective search space used: 1969858090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)