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Os02g0538900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Eukaryotic transcription factor, DNA-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.36 (0.029) R2 : 0.454
β1 : 1.17 (0.106) R2dD : 0.152 R2D : 0.127
β2 : 1.18 (0.0723) R2dC : 0.321 R2C : 0.306
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.145 (0.0619) R2dN8 : 0.00884 R2N8 : -0.00787
σ : 0.545
deviance : 135.37
__
_____
C
peak time of C : 15.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
124.31 0.524 6.3 1.62 1.18 0.599 -0.0951 -1.46 0.343 15.5 24.72 641 -- --
126.11 0.523 6.34 1.41 1.2 0.971 -0.153 -- 0.275 15.5 21.95 609 -- --
124.31 0.519 6.3 1.61 1.18 0.601 -- -1.43 0.339 15.5 24.42 626 -- --
125.34 0.521 6.34 1.4 1.15 1.24 -- -- 0.232 15.4 19.35 705 -- --
194.09 0.649 6.27 1.76 -- 1 -- -1.58 0.429 -- 28 1075 -- --
135.29 0.545 6.36 1.17 1.18 -- -0.161 -- 0.146 15.2 -- -- -- --
135.37 0.545 6.36 1.17 1.18 -- -- -- 0.145 15.2 -- -- -- --
196.93 0.654 6.31 1.43 -- 1.07 -- -- 0.356 -- 27.7 1070 -- --
170.22 0.608 6.39 -- 1.15 0.496 -- -- 0.029 15.3 18.01 606 -- --
214.73 0.685 6.36 1.12 -- -- -- -- 0.114 -- -- -- -- --
171.55 0.613 6.39 -- 1.16 -- -- -- 0.0147 15.2 -- -- -- --
214.2 0.684 6.43 -- -- -1.48 -- -- -0.178 -- 40.09 1116 -- --
247.9 0.735 6.39 -- -- -- -- -- -0.0103 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 116.28 atmosphere 1010.0 270 < th dose independent rect. 11 10
3 117.26 atmosphere 1010.0 270 < th dose independent rect. 12 18
4 117.60 temperature 15.0 270 > th dose independent rect. 11 10
6 117.99 atmosphere 1015.0 270 < th dose dependent rect. 12 18
8 118.00 atmosphere 1015.0 270 < th dose dependent rect. 1 6
10 118.10 radiation 20.0 270 < th dose independent rect. 1 7
12 118.28 radiation 30.0 270 < th dose dependent rect. 1 7
13 118.29 precipitation 0.1 270 < th dose independent rect. 1 6
14 118.29 precipitation 0.1 270 < th dose dependent rect. 1 6
16 118.34 atmosphere 995.0 270 > th dose dependent rect. 20 16
21 118.49 wind 9.0 270 < th dose independent rect. 7 18
24 118.52 wind 5.0 270 < th dose independent rect. 1 6
31 118.61 atmosphere 1015.0 270 < th dose dependent rect. 3 2
38 118.66 atmosphere 995.0 90 > th dose dependent rect. 22 14
39 118.70 humidity 70.0 270 > th dose independent rect. 1 6
43 118.74 temperature 10.0 270 > th dose independent rect. 1 6
45 118.74 temperature 30.0 270 < th dose independent rect. 1 6
46 118.74 humidity 50.0 270 > th dose independent rect. 1 6
48 118.74 atmosphere 995.0 270 > th dose independent rect. 1 6
49 118.74 atmosphere 1015.0 270 < th dose independent rect. 1 6
51 118.74 temperature 10.0 270 > th dose independent rect. 7 18
52 118.76 precipitation 0.1 270 < th dose independent rect. 7 18
54 118.76 precipitation 0.1 270 < th dose dependent rect. 7 18
57 118.84 wind 9.0 270 < th dose dependent rect. 2 4
59 118.85 temperature 15.0 270 > th dose independent rect. 12 18
66 118.92 wind 1.0 270 > th dose independent rect. 11 10
68 118.93 temperature 10.0 270 > th dose independent rect. 21 14
69 118.93 atmosphere 995.0 270 > th dose independent rect. 21 14
71 118.93 wind 9.0 270 < th dose dependent rect. 1 6
72 118.94 wind 5.0 270 < th dose independent rect. 2 4
84 119.04 radiation 10.0 270 < th dose dependent rect. 1 16
86 119.06 humidity 50.0 270 > th dose independent rect. 21 14
87 119.07 wind 9.0 270 < th dose independent rect. 21 14
99 119.21 atmosphere 995.0 270 > th dose dependent rect. 6 20
101 119.23 wind 9.0 270 < th dose dependent rect. 7 18
104 119.25 radiation 10.0 270 < th dose dependent rect. 1 14
124 119.27 atmosphere 995.0 90 > th dose dependent rect. 8 19
188 119.64 atmosphere 995.0 270 > th dose dependent rect. 18 8
210 119.71 radiation 40.0 90 < th dose independent rect. 12 20
230 119.75 precipitation 0.1 270 < th dose independent rect. 11 10
232 119.75 precipitation 0.1 270 < th dose dependent rect. 11 10
239 119.79 precipitation 0.1 270 < th dose independent rect. 21 14
242 119.79 precipitation 0.1 270 < th dose dependent rect. 21 14
244 119.80 temperature 10.0 270 > th dose independent rect. 6 6
245 119.80 atmosphere 995.0 270 > th dose independent rect. 6 6
246 119.80 atmosphere 1015.0 270 < th dose independent rect. 6 6
251 119.86 precipitation 0.1 270 < th dose independent rect. 6 6
255 119.86 precipitation 0.1 270 < th dose dependent rect. 6 6
258 119.89 radiation 40.0 270 < th dose independent rect. 12 18
260 119.90 precipitation 0.1 10 < th dose independent rect. 3 6
261 119.90 atmosphere 1010.0 270 < th dose independent rect. 1 20
262 119.90 temperature 15.0 30 > th dose independent rect. 12 21
263 119.90 atmosphere 995.0 270 > th dose dependent rect. 20 5
264 119.90 precipitation 0.1 10 < th dose dependent rect. 3 6
275 119.94 wind 9.0 270 < th dose independent rect. 6 6
277 119.96 atmosphere 1000.0 90 > th dose independent rect. 12 10
279 119.97 atmosphere 995.0 270 > th dose independent rect. 12 8
287 119.99 wind 9.0 270 < th dose dependent rect. 8 2
291 120.00 precipitation 0.1 270 < th dose independent rect. 12 18
293 120.00 precipitation 0.1 270 < th dose dependent rect. 12 18
295 120.02 temperature 15.0 10 > th dose independent rect. 14 19
298 120.03 temperature 10.0 270 > th dose dependent rect. 1 6
300 120.04 radiation 40.0 90 < th dose dependent rect. 12 21
316 120.07 atmosphere 995.0 270 > th dose independent rect. 12 18
321 120.09 humidity 50.0 270 > th dose independent rect. 6 6
326 120.09 radiation 40.0 270 < th dose dependent rect. 12 18
327 120.10 precipitation 0.1 270 < th dose independent rect. 3 2
330 120.10 precipitation 0.1 270 < th dose dependent rect. 3 2
342 120.14 atmosphere 995.0 10 > th dose dependent rect. 9 18
344 120.15 radiation 40.0 90 < th dose independent rect. 12 10
349 120.18 wind 9.0 270 < th dose independent rect. 11 10
361 120.22 radiation 1.0 10 > th dose independent rect. 9 5
362 120.22 temperature 30.0 270 < th dose dependent rect. 8 1
381 120.28 humidity 50.0 270 > th dose dependent rect. 1 6
384 120.30 radiation 40.0 10 < th dose independent rect. 13 9
398 120.35 wind 9.0 270 < th dose independent rect. 12 18
401 120.35 wind 9.0 270 < th dose independent rect. 5 22
405 120.36 precipitation 0.1 10 < th dose independent rect. 9 18
407 120.36 humidity 60.0 10 > th dose independent rect. 12 21
409 120.36 precipitation 0.1 10 < th dose dependent rect. 9 18
410 120.37 wind 5.0 270 < th dose independent rect. 3 2
415 120.38 radiation 40.0 10 < th dose independent rect. 13 20
418 120.39 wind 9.0 270 < th dose dependent rect. 7 5
420 120.39 wind 9.0 10 < th dose dependent rect. 3 6
434 120.44 temperature 10.0 270 > th dose independent rect. 8 2
435 120.44 atmosphere 995.0 270 > th dose independent rect. 8 2
436 120.44 atmosphere 1015.0 270 < th dose independent rect. 8 2
441 120.44 temperature 10.0 270 > th dose independent rect. 10 22
443 120.44 humidity 50.0 270 > th dose dependent rect. 2 4
447 120.45 humidity 50.0 270 > th dose independent rect. 8 2
462 120.49 wind 9.0 270 < th dose independent rect. 8 2
467 120.49 radiation 20.0 10 < th dose dependent rect. 5 17
469 120.50 precipitation 0.1 270 < th dose independent rect. 8 2
472 120.50 precipitation 0.1 270 < th dose dependent rect. 8 2
481 120.53 wind 9.0 10 < th dose independent rect. 9 18
488 120.56 atmosphere 1015.0 10 < th dose dependent rect. 4 5
503 120.60 temperature 10.0 270 > th dose independent rect. 3 2
505 120.60 temperature 30.0 270 < th dose independent rect. 3 2
506 120.60 humidity 50.0 270 > th dose independent rect. 3 2
509 120.60 atmosphere 995.0 270 > th dose independent rect. 3 2
510 120.60 atmosphere 1010.0 270 < th dose independent rect. 3 2
512 120.60 radiation 20.0 270 < th dose independent rect. 3 2
517 120.60 temperature 10.0 270 > th dose independent rect. 5 22
531 120.64 wind 7.0 10 < th dose independent rect. 3 6
545 120.64 wind 9.0 270 < th dose dependent rect. 6 7
548 120.65 radiation 40.0 270 < th dose dependent rect. 3 2
550 120.66 temperature 10.0 1440 > th dose independent rect. 13 10
553 120.66 temperature 10.0 1440 > th dose independent rect. 23 14
556 120.66 atmosphere 995.0 1440 > th dose independent rect. 23 14
571 120.69 temperature 10.0 270 > th dose dependent rect. 2 4
576 120.70 precipitation 0.1 270 < th dose independent rect. 10 22
580 120.70 precipitation 0.1 270 < th dose dependent rect. 10 22
584 120.71 atmosphere 995.0 270 > th dose independent rect. 7 18
598 120.73 temperature 10.0 10 > th dose independent rect. 3 6
600 120.73 temperature 30.0 10 < th dose independent rect. 3 6
601 120.73 humidity 50.0 10 > th dose independent rect. 3 6
603 120.73 atmosphere 995.0 10 > th dose independent rect. 3 6
604 120.73 atmosphere 1015.0 10 < th dose independent rect. 3 6
605 120.73 humidity 50.0 270 > th dose independent rect. 12 8
612 120.73 radiation 10.0 270 < th dose independent rect. 1 16
613 120.73 temperature 10.0 10 > th dose independent rect. 9 18
635 120.79 radiation 1.0 270 < th dose independent rect. 3 2
654 120.81 radiation 40.0 10 < th dose dependent rect. 4 18
678 120.86 humidity 50.0 270 > th dose independent rect. 13 17
695 120.89 humidity 60.0 270 > th dose dependent rect. 20 5
730 120.92 humidity 50.0 90 > th dose dependent rect. 3 6
739 120.93 precipitation 0.1 10 < th dose independent rect. 14 19
743 120.93 precipitation 0.1 10 < th dose dependent rect. 14 19
744 120.93 radiation 40.0 10 < th dose dependent rect. 13 20
793 120.98 atmosphere 995.0 10 > th dose independent rect. 14 19
804 121.00 radiation 1.0 10 > th dose independent rect. 9 3
806 121.00 radiation 40.0 10 < th dose independent rect. 3 6
808 121.01 radiation 10.0 270 < th dose independent rect. 1 14
811 121.01 precipitation 0.1 10 < th dose independent rect. 12 21
814 121.01 precipitation 0.1 10 < th dose dependent rect. 12 21
852 121.06 precipitation 0.1 270 < th dose independent rect. 5 22
854 121.06 precipitation 0.1 270 < th dose dependent rect. 5 22
874 121.09 temperature 15.0 270 > th dose independent rect. 1 19
880 121.10 atmosphere 995.0 30 > th dose independent rect. 12 21
905 121.14 temperature 10.0 1440 > th dose independent rect. 10 3
909 121.14 atmosphere 995.0 1440 > th dose independent rect. 10 3
911 121.14 temperature 10.0 1440 > th dose independent rect. 13 21
919 121.15 radiation 40.0 10 < th dose independent rect. 3 19
941 121.19 temperature 10.0 10 > th dose independent rect. 9 5
943 121.19 atmosphere 995.0 10 > th dose independent rect. 9 5
944 121.19 atmosphere 1015.0 10 < th dose independent rect. 9 5
945 121.19 precipitation 0.1 10 < th dose independent rect. 9 5
951 121.19 radiation 1.0 10 > th dose dependent rect. 9 3
952 121.19 precipitation 0.1 10 < th dose dependent rect. 9 5
955 121.20 temperature 10.0 30 > th dose independent rect. 9 3
957 121.20 atmosphere 995.0 30 > th dose independent rect. 9 3
958 121.20 atmosphere 1015.0 30 < th dose independent rect. 9 3
959 121.20 precipitation 0.1 30 < th dose independent rect. 9 3
962 121.20 precipitation 0.1 30 < th dose dependent rect. 9 3
965 121.21 radiation 1.0 270 > th dose independent rect. 6 6
968 121.22 humidity 80.0 270 > th dose independent rect. 20 5
975 121.23 atmosphere 995.0 270 > th dose dependent rect. 8 2
998 121.25 atmosphere 995.0 270 > th dose dependent rect. 22 2