BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0538900 Os02g0538900|AK063644
(326 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G04840.1 | chr5:1406005-1407648 FORWARD LENGTH=308 139 2e-33
AT2G42380.2 | chr2:17647205-17648660 REVERSE LENGTH=322 80 2e-15
AT3G58120.1 | chr3:21521289-21523078 REVERSE LENGTH=330 79 5e-15
AT1G58110.1 | chr1:21515919-21517374 REVERSE LENGTH=375 77 9e-15
AT1G35490.1 | chr1:13061856-13063166 FORWARD LENGTH=301 60 1e-09
AT1G06070.1 | chr1:1835201-1837116 REVERSE LENGTH=424 59 4e-09
AT2G40620.1 | chr2:16954804-16956872 REVERSE LENGTH=368 57 1e-08
AT1G43700.1 | chr1:16484352-16486017 FORWARD LENGTH=342 57 1e-08
AT1G06850.1 | chr1:2105233-2106518 FORWARD LENGTH=338 56 3e-08
AT2G31370.3 | chr2:13379448-13381072 FORWARD LENGTH=399 54 1e-07
AT4G38900.1 | chr4:18139564-18141520 REVERSE LENGTH=554 49 3e-06
AT4G06598.1 | chr4:3663945-3665395 FORWARD LENGTH=342 49 3e-06
AT2G12900.1 | chr2:5293897-5295480 FORWARD LENGTH=265 48 8e-06
>AT5G04840.1 | chr5:1406005-1407648 FORWARD LENGTH=308
Length = 307
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 141/288 (48%), Gaps = 32/288 (11%)
Query: 34 SEDPFVGEPPCWLDDLLADS--GKSHTLPPLRRACSDSDAIL-DVLTSFQSPIYPIDEGD 90
++D + + P WLD+LL D G PLRR+ SDS +L D+ +F D+
Sbjct: 44 TQDSRLEDQPAWLDELLCDKTDGLLTRGGPLRRSASDSVVLLGDISATFSG----FDQ-- 97
Query: 91 PQPVXXXXXXXXXXXXXXXXXXXXXXXCVYGPNSPRQKTRLTSSESSMVNAVLENVPSNP 150
CVYGPNSPR K + S + + +A + P
Sbjct: 98 ---------SEDEESLSSEACGDLESACVYGPNSPRAKNNSSFSNNPIASAFSDYGSQTP 148
Query: 151 LQYLMIDATSGVNCXXXXXXXXXXXXXXXCHADQEKSLKRRSGQRSRVRKLQYIADLERT 210
Q L D G+N C + + KR GQRSRVRKLQYIA+LERT
Sbjct: 149 PQNL-DDTVKGIN--------RSPVAENACGSMGIPNAKRNPGQRSRVRKLQYIAELERT 199
Query: 211 VDSLQNIGADLAVRVASLFQLRNALSMENKQLRRQITSLQQAKLIKDGQTQMLKKETERL 270
V LQ + ADL+VRVASL Q R LS+EN QL++Q+ L+Q KLI++G+ Q+LKKE +RL
Sbjct: 200 VGMLQTVEADLSVRVASLLQTRATLSLENSQLKQQMAILKQDKLIREGEYQLLKKEAQRL 259
Query: 271 KQLXXXXXXXXXXXXCFEANSFGGG-----DPSAINWQMLDMSKLSLN 313
K + S G S ++W +LD++KL+LN
Sbjct: 260 KSGLGYLGSTNNSNRLVRSYSAGSNVAPRTASSHLDWNLLDLTKLNLN 307
>AT2G42380.2 | chr2:17647205-17648660 REVERSE LENGTH=322
Length = 321
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 60/84 (71%)
Query: 190 RRSGQRSRVRKLQYIADLERTVDSLQNIGADLAVRVASLFQLRNALSMENKQLRRQITSL 249
R+S QRSRVRKLQYI++LER+V SLQ + L+ RVA L R L+++N L+++I +L
Sbjct: 197 RQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAAL 256
Query: 250 QQAKLIKDGQTQMLKKETERLKQL 273
Q KL KD + LK+E ERL+Q+
Sbjct: 257 SQDKLFKDAHQEALKREIERLRQV 280
>AT3G58120.1 | chr3:21521289-21523078 REVERSE LENGTH=330
Length = 329
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 60/84 (71%)
Query: 190 RRSGQRSRVRKLQYIADLERTVDSLQNIGADLAVRVASLFQLRNALSMENKQLRRQITSL 249
R+S QRSRVRKLQYI++LER+V SLQ + L+ RVA L R L+++N ++++I +L
Sbjct: 213 RQSAQRSRVRKLQYISELERSVTSLQTEVSVLSPRVAFLDHQRLLLNVDNSAIKQRIAAL 272
Query: 250 QQAKLIKDGQTQMLKKETERLKQL 273
Q K+ KD + LK+E ERL+Q+
Sbjct: 273 AQDKIFKDAHQEALKREIERLRQV 296
>AT1G58110.1 | chr1:21515919-21517374 REVERSE LENGTH=375
Length = 374
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 62/92 (67%)
Query: 182 ADQEKSLKRRSGQRSRVRKLQYIADLERTVDSLQNIGADLAVRVASLFQLRNALSMENKQ 241
AD K K++ QRSRVRKLQYI++LER V +LQ G+ ++ + L Q LSMENK
Sbjct: 232 ADNTKRAKQQFAQRSRVRKLQYISELERNVQTLQAEGSKVSAELDFLNQRNLILSMENKA 291
Query: 242 LRRQITSLQQAKLIKDGQTQMLKKETERLKQL 273
L++++ S+ Q KLIK + ++L+KE RL+ L
Sbjct: 292 LKKRLESIAQEKLIKQLEQEVLEKEIGRLRAL 323
>AT1G35490.1 | chr1:13061856-13063166 FORWARD LENGTH=301
Length = 300
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 57/86 (66%)
Query: 186 KSLKRRSGQRSRVRKLQYIADLERTVDSLQNIGADLAVRVASLFQLRNALSMENKQLRRQ 245
K +K ++ R+R+R+L+YI+DLERT+ LQ G +++ + L Q LSMEN+ L+++
Sbjct: 173 KRIKHQNAHRARLRRLEYISDLERTIQVLQVEGCEMSSAIHYLDQQLLMLSMENRALKQR 232
Query: 246 ITSLQQAKLIKDGQTQMLKKETERLK 271
+ SL + + +K + Q+L++E L+
Sbjct: 233 MDSLAEIQKLKHVEQQLLEREIGNLQ 258
>AT1G06070.1 | chr1:1835201-1837116 REVERSE LENGTH=424
Length = 423
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 52/84 (61%)
Query: 190 RRSGQRSRVRKLQYIADLERTVDSLQNIGADLAVRVASLFQLRNALSMENKQLRRQITSL 249
R+S RS+ RK++YIA+LER V +LQ L+ ++ L + N L +EN +L+ ++ ++
Sbjct: 221 RQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLGVENNELKLRVQTM 280
Query: 250 QQAKLIKDGQTQMLKKETERLKQL 273
+Q ++D LK+E + LK L
Sbjct: 281 EQQVHLQDALNDALKEEVQHLKVL 304
>AT2G40620.1 | chr2:16954804-16956872 REVERSE LENGTH=368
Length = 367
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 190 RRSGQRSRVRKLQYIADLERTVDSLQNIGADLAVRVASLFQL-RNALSMENKQLRRQITS 248
R+S RS+ RK +YI +LER V +LQ L+ ++ SLFQ LS EN +L+ ++
Sbjct: 159 RQSAARSKERKARYILELERKVQTLQTEATTLSAQL-SLFQRDTTGLSSENTELKLRLQV 217
Query: 249 LQQAKLIKDGQTQMLKKETERLK 271
++Q ++D + LKKE ERLK
Sbjct: 218 MEQQAKLRDALNEQLKKEVERLK 240
>AT1G43700.1 | chr1:16484352-16486017 FORWARD LENGTH=342
Length = 341
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 50/82 (60%)
Query: 190 RRSGQRSRVRKLQYIADLERTVDSLQNIGADLAVRVASLFQLRNALSMENKQLRRQITSL 249
R+S RS+ RK++Y +LER V +LQN L+ +V L + + L+ ENK L+ ++ +L
Sbjct: 205 RQSAARSKERKIRYTGELERKVQTLQNEATTLSAQVTMLQRGTSELNTENKHLKMRLQAL 264
Query: 250 QQAKLIKDGQTQMLKKETERLK 271
+Q ++D + L+ E RLK
Sbjct: 265 EQQAELRDALNEALRDELNRLK 286
>AT1G06850.1 | chr1:2105233-2106518 FORWARD LENGTH=338
Length = 337
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 50/82 (60%)
Query: 190 RRSGQRSRVRKLQYIADLERTVDSLQNIGADLAVRVASLFQLRNALSMENKQLRRQITSL 249
R+S RS+ RK +YI +LER V SLQ L+ ++ + N L+ EN +L+ ++ ++
Sbjct: 159 RQSAARSKERKARYIQELERKVQSLQTEATTLSAQLTLYQRDTNGLANENTELKLRLQAM 218
Query: 250 QQAKLIKDGQTQMLKKETERLK 271
+Q +++ + L+KE ER+K
Sbjct: 219 EQQAQLRNALNEALRKEVERMK 240
>AT2G31370.3 | chr2:13379448-13381072 FORWARD LENGTH=399
Length = 398
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 52/84 (61%)
Query: 190 RRSGQRSRVRKLQYIADLERTVDSLQNIGADLAVRVASLFQLRNALSMENKQLRRQITSL 249
R+S RS+ RK +YI +LER V +LQ L+ ++ L + N L++EN +L+ ++ ++
Sbjct: 212 RQSAARSKERKTRYIFELERKVQTLQTEATTLSAQLTLLQRDTNGLTVENNELKLRLQTM 271
Query: 250 QQAKLIKDGQTQMLKKETERLKQL 273
+Q ++D + LK+E + LK L
Sbjct: 272 EQQVHLQDELNEALKEEIQHLKVL 295
>AT4G38900.1 | chr4:18139564-18141520 REVERSE LENGTH=554
Length = 553
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 48/82 (58%)
Query: 190 RRSGQRSRVRKLQYIADLERTVDSLQNIGADLAVRVASLFQLRNALSMENKQLRRQITSL 249
R+S RS+ RK++YI +LE V +LQ L+ ++ L + L+ +N +L+ ++ ++
Sbjct: 411 RQSAARSKERKMRYIVELEHKVQTLQTEATTLSAQLTLLQRDMMGLTNQNNELKFRLQAM 470
Query: 250 QQAKLIKDGQTQMLKKETERLK 271
+Q ++D + L E +RLK
Sbjct: 471 EQQARLRDALNEALNGEVQRLK 492
>AT4G06598.1 | chr4:3663945-3665395 FORWARD LENGTH=342
Length = 341
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 23/88 (26%)
Query: 186 KSLKRRSGQRSRVRKLQYIADLERTVDSLQNIGADLAVRVASLFQLRNALSMENKQLRRQ 245
K +++ QRSRVRK+QYIA+LER V L ENK L+ +
Sbjct: 235 KRARQQFAQRSRVRKIQYIAELERNVQIL-----------------------ENKSLKNR 271
Query: 246 ITSLQQAKLIKDGQTQMLKKETERLKQL 273
+ SL Q +LIK + +L+KE RL+ L
Sbjct: 272 LESLAQEQLIKYLEHDVLEKEIVRLRAL 299
>AT2G12900.1 | chr2:5293897-5295480 FORWARD LENGTH=265
Length = 264
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 14/127 (11%)
Query: 190 RRSGQRSRVRKLQYIADLERTVDSLQNIGADLAVRVASLFQLRNALSMENKQLRRQITSL 249
R S+ RKL+Y+ DLE + L+N A + ++ L + + L E K++ QI SL
Sbjct: 127 RELAASSKQRKLKYMIDLEHRIKFLENKNALIFEKIKLLEKDKTILMNEKKEITIQIESL 186
Query: 250 QQAKLIKDGQTQMLKKETERLK--------------QLXXXXXXXXXXXXCFEANSFGGG 295
+Q ++D T+ L E ERLK +L F+ ++ G
Sbjct: 187 EQQAQLRDALTEKLHVEIERLKVITISNEKGSVELQRLKMETCEVLQYRREFDRSNMQGM 246
Query: 296 DPSAINW 302
DP+ W
Sbjct: 247 DPNMFTW 253
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.132 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,630,017
Number of extensions: 200152
Number of successful extensions: 556
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 552
Number of HSP's successfully gapped: 13
Length of query: 326
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 227
Effective length of database: 8,392,385
Effective search space: 1905071395
Effective search space used: 1905071395
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)