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Os03g0127500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Eukaryotic transcription factor, DNA-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.82 (0.0635) R2 : 0.395
β1 : 1.27 (0.312) R2dD : 0.0725 R2D : -0.197
β2 : 1.4 (0.117) R2dC : 0.193 R2C : 0.0808
β3 : -2.69 (0.365) R2dE : 0.277 R2E : -0.272
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -9.89 (0.826) R2dD*E : 0.403 R2D*E : 0.0678
γ1 : 0.0677 (0.13) R2dN8 : 0.000792 R2N8 : -0.0903
σ : 0.898
deviance : 371.96
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_____
C
peak time of C : 9.77
E
wheather : radiation
threshold : 14.9
memory length : 4319
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 0.841

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
354.7 0.885 7.81 1.41 1.38 -2.72 -2.15 -9.78 0.0937 10.1 10.67 4320 18 0.891
410.82 0.944 7.43 1.3 1.34 -2.48 -2.31 -- 0.143 9.97 36.94 47517 17.7 1.28
371.96 0.898 7.82 1.27 1.4 -2.69 -- -9.89 0.0677 9.77 14.9 4319 18 0.841
400.56 0.932 7.42 1.19 1.35 -2.61 -- -- 0.11 9.65 7.903 40306 17.7 1.45
488.9 1.03 7.82 1.29 -- -2.76 -- -9.72 0.116 -- 20.81 4321 18 0.983
476.17 1.02 7.41 -0.206 1.36 -- -2.29 -- 0.13 9.89 -- -- -- --
495.01 1.04 7.41 -0.301 1.4 -- -- -- 0.121 9.44 -- -- -- --
451.34 0.989 7.42 1.18 -- -2.62 -- -- 0.1 -- 7.355 40914 17.7 1.57
396.57 0.927 7.42 -- 1.35 -1.97 -- -- 0.11 9.5 5.107 40272 17.7 2.6
609.78 1.15 7.45 -0.309 -- -- -- -- 0.126 -- -- -- -- --
497.4 1.04 7.41 -- 1.4 -- -- -- 0.155 9.46 -- -- -- --
432.13 0.968 7.42 -- -- -2.89 -- -- 0.107 -- 6.055 42315 17.7 2.59
612.31 1.15 7.44 -- -- -- -- -- 0.16 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 354.74 wind 3.0 43200 < th dose dependent rect. 3 1
2 354.87 atmosphere 1005.0 43200 > th dose independent rect. 18 2
5 355.38 atmosphere 1005.0 43200 < th dose independent rect. 17 3
9 355.55 radiation 10.0 4320 < th dose dependent rect. 18 1
21 356.92 radiation 10.0 4320 < th dose dependent rect. 18 10
24 357.01 wind 1.0 43200 > th dose dependent rect. 3 1
26 357.09 radiation 10.0 4320 < th dose dependent rect. 18 7
57 358.05 radiation 10.0 4320 < th dose dependent rect. 18 5
84 358.76 atmosphere 1005.0 43200 > th dose independent rect. 11 9
118 359.42 wind 3.0 43200 < th dose independent rect. 3 1
119 359.43 humidity 90.0 43200 < th dose independent rect. 19 1
139 359.92 atmosphere 1005.0 43200 < th dose independent rect. 14 14
143 360.05 atmosphere 1005.0 43200 < th dose independent sin 18 NA
151 360.14 atmosphere 1005.0 43200 > th dose independent rect. 14 14
158 360.23 wind 3.0 43200 > th dose independent rect. 3 1
163 360.26 atmosphere 1005.0 43200 > th dose independent sin 18 NA
253 361.27 humidity 90.0 43200 > th dose independent rect. 19 1
294 361.75 atmosphere 1005.0 43200 > th dose independent rect. 2 18
323 362.13 wind 9.0 43200 < th dose dependent rect. 24 4
326 362.16 humidity 90.0 43200 < th dose independent rect. 8 1
327 362.16 humidity 80.0 43200 > th dose dependent rect. 9 2
336 362.24 wind 1.0 43200 > th dose dependent rect. 24 4
376 362.73 humidity 90.0 43200 > th dose dependent rect. 19 1
387 362.83 atmosphere 1005.0 43200 > th dose independent rect. 2 1
398 362.98 atmosphere 1005.0 43200 < th dose independent rect. 2 2
406 363.10 radiation 1.0 4320 < th dose independent rect. 18 11
410 363.16 radiation 40.0 14400 < th dose independent rect. 15 18
412 363.24 humidity 80.0 43200 > th dose independent rect. 10 1
441 363.57 humidity 90.0 43200 > th dose independent rect. 8 1
453 363.65 atmosphere 1010.0 43200 < th dose independent rect. 7 1
455 363.67 radiation 1.0 4320 < th dose independent rect. 18 1
459 363.73 radiation 1.0 43200 > th dose independent rect. 18 11
486 363.99 radiation 1.0 4320 < th dose independent rect. 18 7
491 364.03 humidity 80.0 43200 > th dose independent rect. 16 1
503 364.14 radiation 20.0 14400 > th dose dependent rect. 16 16
509 364.21 radiation 1.0 4320 > th dose independent rect. 18 11
513 364.26 radiation 1.0 4320 < th dose independent rect. 18 5
526 364.36 radiation 40.0 14400 > th dose dependent rect. 7 2
571 364.66 humidity 90.0 43200 < th dose independent rect. 15 6
574 364.71 radiation 10.0 43200 > th dose independent rect. 5 1
591 364.77 atmosphere 1005.0 43200 > th dose dependent rect. 4 1
596 364.80 atmosphere 1005.0 43200 < th dose independent rect. 2 18
626 365.09 radiation 1.0 43200 < th dose independent rect. 18 11
627 365.09 humidity 90.0 43200 < th dose independent rect. 8 13
663 365.41 radiation 1.0 4320 > th dose independent rect. 18 1
681 365.48 radiation 1.0 43200 > th dose independent rect. 18 1
695 365.50 wind 5.0 43200 < th dose independent rect. 5 1
699 365.53 radiation 40.0 14400 < th dose independent rect. 7 2
731 365.80 humidity 80.0 43200 > th dose dependent rect. 8 11
736 365.83 radiation 40.0 14400 < th dose independent rect. 24 9
737 365.83 radiation 40.0 14400 < th dose independent rect. 22 11
738 365.84 atmosphere 1005.0 43200 > th dose independent no NA NA
751 365.94 radiation 40.0 14400 < th dose independent rect. 2 7
760 365.99 humidity 80.0 43200 < th dose independent rect. 14 3
769 366.04 humidity 80.0 43200 > th dose dependent rect. 15 4
784 366.12 humidity 80.0 43200 > th dose independent rect. 10 8
837 366.37 humidity 90.0 43200 < th dose independent rect. 11 10
842 366.39 radiation 1.0 43200 < th dose independent rect. 18 1
849 366.42 wind 3.0 43200 > th dose dependent rect. 12 1
850 366.43 radiation 1.0 43200 < th dose independent rect. 18 9
853 366.45 radiation 1.0 43200 < th dose independent rect. 18 7
873 366.55 wind 5.0 43200 < th dose independent rect. 10 3
876 366.55 wind 3.0 43200 > th dose dependent rect. 10 3
894 366.63 atmosphere 1005.0 43200 > th dose dependent rect. 7 1
914 366.74 radiation 30.0 14400 > th dose independent rect. 7 1
936 366.79 wind 5.0 43200 > th dose independent rect. 10 3
963 366.88 wind 3.0 43200 > th dose dependent rect. 5 1
972 366.94 precipitation 0.1 43200 > th dose independent rect. 16 1
980 366.97 humidity 80.0 43200 < th dose independent rect. 10 7
983 366.98 humidity 90.0 43200 > th dose independent rect. 7 14
984 366.98 humidity 90.0 43200 > th dose independent rect. 7 16