BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0127500 Os03g0127500|Os03g0127500
(426 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0127500 Eukaryotic transcription factor, DNA-binding d... 660 0.0
Os10g0531900 Similar to BZIP-like protein 360 1e-99
Os08g0543900 Similar to Transcription factor RF2b 255 4e-68
Os07g0679500 Similar to Transcription factor RF2b 166 4e-41
Os03g0336200 Transcription factor RF2b 162 4e-40
Os09g0516200 Transcription factor RF2a. Splice isoform 2 162 5e-40
Os12g0162500 Similar to BZIP-like protein 159 3e-39
Os04g0181300 150 2e-36
Os11g0160500 BZIP-like protein 136 3e-32
AF467732 129 4e-30
Os01g0756200 Similar to VirE2-interacting protein VIP1 87 3e-17
Os02g0247100 Similar to BZIP protein BZO2H3 (Fragment) 86 7e-17
Os01g0211800 Similar to VirE2-interacting protein VIP1 75 7e-14
>Os03g0127500 Eukaryotic transcription factor, DNA-binding domain containing
protein
Length = 426
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/426 (80%), Positives = 342/426 (80%)
Query: 1 MNGGIGDALMQPQHVQVMSSSLPMVASTFVXXXXXXXXXXXXXXXXPTPPQVFXXXXXXX 60
MNGGIGDALMQPQHVQVMSSSLPMVASTFV PTPPQVF
Sbjct: 1 MNGGIGDALMQPQHVQVMSSSLPMVASTFVAEPAAAANKPRAAGLPPTPPQVFAAQRAAA 60
Query: 61 XXGGDVCMEESAQGGGGGLPPRKAHRRSSSDVPFGYLAGQHQLLPPKVEXXXXXXXXXXX 120
GGDVCMEESAQGGGGGLPPRKAHRRSSSDVPFGYLAGQHQLLPPKVE
Sbjct: 61 AAGGDVCMEESAQGGGGGLPPRKAHRRSSSDVPFGYLAGQHQLLPPKVEAGWGHLGAGAG 120
Query: 121 XXXXXDDLFNAYLNLEGLDGLNSSDDRHDEGDSRGSSIKTNGADSSENESEECADDTRGG 180
DDLFNAYLNLEGLDGLNSSDDRHDEGDSRGSSIKTNGADSSENESEECADDTRGG
Sbjct: 121 GAAAADDLFNAYLNLEGLDGLNSSDDRHDEGDSRGSSIKTNGADSSENESEECADDTRGG 180
Query: 181 IRLWSADGGERREGVKRNAAGEPATAPLARHARSLSMDSLIGKXXXXXXXXXXXXXXVAL 240
IRLWSADGGERREGVKRNAAGEPATAPLARHARSLSMDSLIGK VAL
Sbjct: 181 IRLWSADGGERREGVKRNAAGEPATAPLARHARSLSMDSLIGKFNFTAGTAAAAGNGVAL 240
Query: 241 GPNRFSLEFGSGEFTPSEMKKIMADEKLAEMALADPKRVKRVLANRQSAARSKERKMRYI 300
GPNRFSLEFGSGEFTPSEMKKIMADEKLAEMALADPKRVKRVLANRQSAARSKERKMRYI
Sbjct: 241 GPNRFSLEFGSGEFTPSEMKKIMADEKLAEMALADPKRVKRVLANRQSAARSKERKMRYI 300
Query: 301 AELEQKVQILQSEATNLSAQLTMMQRDSAGLATQNNELKFRLHAMEQQAQLRDALNEALT 360
AELEQKVQILQSEATNLSAQLTMMQRDSAGLATQNNELKFRLHAMEQQAQLRDALNEALT
Sbjct: 301 AELEQKVQILQSEATNLSAQLTMMQRDSAGLATQNNELKFRLHAMEQQAQLRDALNEALT 360
Query: 361 TEVQRLKLATAELGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPFYQLQQSQQNGAAK 420
TEVQRLKLATAELGD IPFYQLQQSQQNGAAK
Sbjct: 361 TEVQRLKLATAELGDSCSSSSLAQQIQLNAQNQMFQLQQQQATQIPFYQLQQSQQNGAAK 420
Query: 421 NNESKE 426
NNESKE
Sbjct: 421 NNESKE 426
>Os10g0531900 Similar to BZIP-like protein
Length = 400
Score = 360 bits (924), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 220/372 (59%), Positives = 248/372 (66%), Gaps = 35/372 (9%)
Query: 64 GDVCMEESAQGGGGGLPPRKAHRRSSSDVPFGYLAGQHQLLPPKVEXXXXXXXXXXXXXX 123
GDVCM+++A+GG LPPRKAHRRS SDVPFGY L PP +
Sbjct: 54 GDVCMDDTARGGL--LPPRKAHRRSRSDVPFGYF---QPLPPPSPKMEAGGGWALPGCGG 108
Query: 124 XXD-DLFNAYLNLEGL---DGLNSSDDRHDEGDSRGSSIKTNGADSSENESEECADDTRG 179
D DL NAY++LEG+ DGLN+SD GDSRGSS++TNGADSSENESE+
Sbjct: 109 AGDVDLLNAYMSLEGMGGADGLNNSD-----GDSRGSSMRTNGADSSENESEDYVGADSQ 163
Query: 180 GIRLWSADGGERREGVKR--NAAGEPATAPLARHARSLSMDSLIGKXXXXXXXXXXXXXX 237
+ LW GG G KR NAAGE A ARHARSLSMDSL+GK
Sbjct: 164 AL-LWGGAGGGEAAGKKRRNNAAGEKA----ARHARSLSMDSLMGKLSFAANGE------ 212
Query: 238 VALGPNRFSLEFGSGEFTPSEMKKIMADEKLAEMALADPKRVKRVLANRQSAARSKERKM 297
P +FSLEFGSGEFTP+EMK+IMADEKLAEMALADPKRVKRVLANRQSAARSKER+M
Sbjct: 213 ----PAKFSLEFGSGEFTPAEMKRIMADEKLAEMALADPKRVKRVLANRQSAARSKERRM 268
Query: 298 RYIAELEQKVQILQSEATNLSAQLTMMQRDSAGLATQNNELKFRLHAMEQQAQLRDALNE 357
RYIAELEQKVQILQ+EAT LSAQLT++QRDS+G+ATQNNELKFRL +MEQQAQLRDALNE
Sbjct: 269 RYIAELEQKVQILQTEATTLSAQLTLLQRDSSGMATQNNELKFRLQSMEQQAQLRDALNE 328
Query: 358 ALTTEVQRLKLATAELGDXXXXXXXXXXXXXXXXXXX---XXXXXXXXXXIPFYQLQ-QS 413
ALT EVQRLKLA E+ D IPFYQL+
Sbjct: 329 ALTAEVQRLKLAANEVCDTSSSSNLAHQIQLRCQNQMLDLHKQQQQQVEQIPFYQLELPE 388
Query: 414 QQNGAAKNNESK 425
QQNG A+N+ESK
Sbjct: 389 QQNGTARNHESK 400
>Os08g0543900 Similar to Transcription factor RF2b
Length = 464
Score = 255 bits (652), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 156/311 (50%), Positives = 187/311 (60%), Gaps = 46/311 (14%)
Query: 85 HRRSSSDVPFGYLAGQHQLLPPKVEXXXXXXXXXXXXXXXXD-------DLFNAYLNLEG 137
HRRS SD+PFG+ H P D DL N+Y++L+G
Sbjct: 136 HRRSQSDIPFGF---SHLSPPLPPPAPVKREAATAAEGCRSDGDDFALYDLVNSYMDLDG 192
Query: 138 LDGLNSSDDRHDEGDSRGSSIKTNG-ADSSENESEECADDTRGGIRLWSADGGERREGVK 196
++ LNSS++RH++ DSR S +T ADSSENE+E + ER++G
Sbjct: 193 MEALNSSEERHEDRDSRASGTRTGSVADSSENEAESHSTPV------------ERKDGGG 240
Query: 197 RNAAGEPATAPLARHARSLSMDSLIGKXXXXXXXXXXXXXXVAL------------GPNR 244
+ +RH RSLS+DS I K +
Sbjct: 241 K-----------SRHCRSLSVDSFIEKLNFDESPKLPLPSPSGGLSRSGSGSLDGGAASL 289
Query: 245 FSLEFGSGEFTPSEMKKIMADEKLAEMALADPKRVKRVLANRQSAARSKERKMRYIAELE 304
F EF +GEFT +E KKIMA+E+LAE+AL DPKRVKR+LANRQSAARSKERKMRYI ELE
Sbjct: 290 FGAEFANGEFTEAEKKKIMANERLAEIALTDPKRVKRILANRQSAARSKERKMRYIQELE 349
Query: 305 QKVQILQSEATNLSAQLTMMQRDSAGLATQNNELKFRLHAMEQQAQLRDALNEALTTEVQ 364
KVQ+LQ+EAT LSAQLTM+QRDS GLATQNNELK RL AMEQQAQLRDALNEALT EVQ
Sbjct: 350 HKVQVLQTEATTLSAQLTMLQRDSTGLATQNNELKIRLQAMEQQAQLRDALNEALTAEVQ 409
Query: 365 RLKLATAELGD 375
RLKLAT E+ D
Sbjct: 410 RLKLATGEITD 420
>Os07g0679500 Similar to Transcription factor RF2b
Length = 330
Score = 166 bits (419), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 83/117 (70%), Positives = 97/117 (82%)
Query: 258 EMKKIMADEKLAEMALADPKRVKRVLANRQSAARSKERKMRYIAELEQKVQILQSEATNL 317
E KK M+ E+LAE+A DPKR KR+LANRQSAARSKERK RYI ELE+KVQ LQ+EAT L
Sbjct: 106 EAKKAMSSEQLAELAAIDPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTL 165
Query: 318 SAQLTMMQRDSAGLATQNNELKFRLHAMEQQAQLRDALNEALTTEVQRLKLATAELG 374
SAQLT+ QRD+ GL+ +N ELK RL AMEQQAQLRDALN+AL EV+RLK+AT E+
Sbjct: 166 SAQLTLFQRDTTGLSAENAELKIRLQAMEQQAQLRDALNDALKQEVERLKIATGEMA 222
>Os03g0336200 Transcription factor RF2b
Length = 329
Score = 162 bits (410), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 82/118 (69%), Positives = 97/118 (82%)
Query: 258 EMKKIMADEKLAEMALADPKRVKRVLANRQSAARSKERKMRYIAELEQKVQILQSEATNL 317
E KK M E+L+E+A DPKR KR+LANRQSAARSKERK RYI ELE+KVQ LQ+EAT L
Sbjct: 115 EAKKAMTPEQLSELAAIDPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTL 174
Query: 318 SAQLTMMQRDSAGLATQNNELKFRLHAMEQQAQLRDALNEALTTEVQRLKLATAELGD 375
SAQLT+ QRD+ GL+ +N ELK RL AMEQQAQLRDALN+AL E++RLKLAT E+ +
Sbjct: 175 SAQLTLFQRDTTGLSAENAELKIRLQAMEQQAQLRDALNDALKQELERLKLATGEMTN 232
>Os09g0516200 Transcription factor RF2a. Splice isoform 2
Length = 368
Score = 162 bits (410), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 80/124 (64%), Positives = 101/124 (81%)
Query: 250 GSGEFTPSEMKKIMADEKLAEMALADPKRVKRVLANRQSAARSKERKMRYIAELEQKVQI 309
G+ + +E KK ++ KLAE+AL DPKR KR+ ANRQSAARSKERKMRYIAELE+KVQ
Sbjct: 144 GTEGMSSAEAKKAVSAAKLAELALVDPKRAKRIWANRQSAARSKERKMRYIAELERKVQT 203
Query: 310 LQSEATNLSAQLTMMQRDSAGLATQNNELKFRLHAMEQQAQLRDALNEALTTEVQRLKLA 369
LQ+EAT LSAQL ++QRD++GL T+N+ELK RL MEQQ L+DALN+ L +EVQRLK+A
Sbjct: 204 LQTEATTLSAQLALLQRDTSGLTTENSELKLRLQTMEQQVHLQDALNDTLKSEVQRLKVA 263
Query: 370 TAEL 373
T ++
Sbjct: 264 TGQM 267
>Os12g0162500 Similar to BZIP-like protein
Length = 328
Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 78/117 (66%), Positives = 97/117 (82%)
Query: 256 PSEMKKIMADEKLAEMALADPKRVKRVLANRQSAARSKERKMRYIAELEQKVQILQSEAT 315
P KK M E++AE+AL DPKR KR+LANRQSAARSKERK++Y +ELE+KVQ LQ+EAT
Sbjct: 143 PDYAKKAMPAERIAELALIDPKRAKRILANRQSAARSKERKIKYTSELERKVQTLQTEAT 202
Query: 316 NLSAQLTMMQRDSAGLATQNNELKFRLHAMEQQAQLRDALNEALTTEVQRLKLATAE 372
LSAQLT++QRD++GL +N ELK RL +ME+QA+LRDALNEAL EVQRLK+A +
Sbjct: 203 TLSAQLTLLQRDTSGLTAENRELKLRLQSMEEQAKLRDALNEALREEVQRLKIAAGQ 259
>Os04g0181300
Length = 426
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 122/210 (58%), Gaps = 20/210 (9%)
Query: 180 GIRLWSADGGERREGVKRNAAGEPATAPLARHARSLSMDSLI------GKXXXXXXXXXX 233
GI+ WS G +E VK + AG H RSLS+DS + G
Sbjct: 187 GIQAWSPSGSIDKE-VKSSGAGS-----TTHHCRSLSVDSFMMGNLNFGVVGQQMSSPPL 240
Query: 234 XXXXVALG--------PNRFSLEFGSGEFTPSEMKKIMADEKLAEMALADPKRVKRVLAN 285
V +G + F+ E + +FT E KKI+ D+ L+E+ L DP+RVKR+L N
Sbjct: 241 LTTEVNVGGGEPIGSTASPFAAELANVKFTEDEKKKIVMDKSLSEIVLTDPRRVKRILNN 300
Query: 286 RQSAARSKERKMRYIAELEQKVQILQSEATNLSAQLTMMQRDSAGLATQNNELKFRLHAM 345
R SA +SKE+KM+++ EL++K+Q+LQSE T L AQ+T+MQR++ L +QNNELK RL AM
Sbjct: 301 RASATKSKEKKMKHVGELQRKLQVLQSETTTLGAQVTVMQRNNNELVSQNNELKTRLQAM 360
Query: 346 EQQAQLRDALNEALTTEVQRLKLATAELGD 375
+Q AQL DAL L E Q L+ +E+ D
Sbjct: 361 DQLAQLGDALTSRLAAEAQHLRAVVSEISD 390
>Os11g0160500 BZIP-like protein
Length = 200
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 76/118 (64%), Positives = 96/118 (81%)
Query: 256 PSEMKKIMADEKLAEMALADPKRVKRVLANRQSAARSKERKMRYIAELEQKVQILQSEAT 315
P KK M ++LAE+AL DPKR KR+LANRQSAARSKERK++Y ELE+KVQ LQ+EAT
Sbjct: 15 PDYAKKAMPADRLAELALLDPKRAKRILANRQSAARSKERKIKYTGELERKVQTLQTEAT 74
Query: 316 NLSAQLTMMQRDSAGLATQNNELKFRLHAMEQQAQLRDALNEALTTEVQRLKLATAEL 373
LS QLT++QRD++GL +N ELK RL +ME+QA+LRDALN+AL EVQRLK+A ++
Sbjct: 75 TLSTQLTLLQRDTSGLTAENRELKLRLQSMEEQAKLRDALNDALREEVQRLKIAAGQV 132
>AF467732
Length = 186
Score = 129 bits (324), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 87/200 (43%), Positives = 110/200 (55%), Gaps = 37/200 (18%)
Query: 154 RGSSIKTNG-ADSSENESEECADDTRGGIRLWSADGGERREGVKRNAAGEPATAPLARHA 212
R S +T ADSSENE+E + ER++G + +RH
Sbjct: 2 RASGTRTGSVADSSENEAESHSTPV------------ERKDGGGK-----------SRHC 38
Query: 213 RSLSMDSLIGKXXXXXXXXXXXXXXVAL------------GPNRFSLEFGSGEFTPSEMK 260
RSLS+DS I K + F EF +GEFT +E K
Sbjct: 39 RSLSVDSFIEKLNFDESPKLPLPSPSGGLSRSGSGSLDGGAASLFGAEFANGEFTEAEKK 98
Query: 261 KIMADEKLAEMALADPKRVKRVLANRQSAARSKERKMRYIAELEQKVQILQSEATNLSAQ 320
KIMA+E+LAE+AL DPKRVKR+LANRQSAARSKERKMRYI +LE KVQ+LQ+EA+ LS
Sbjct: 99 KIMANERLAEIALTDPKRVKRILANRQSAARSKERKMRYIQKLEHKVQVLQTEASTLSHS 158
Query: 321 LTMMQRDSAGLATQNNELKF 340
L ++R + + QNNELK
Sbjct: 159 LKCLRR-TPWTSPQNNELKL 177
>Os01g0756200 Similar to VirE2-interacting protein VIP1
Length = 265
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 64/95 (67%)
Query: 273 LADPKRVKRVLANRQSAARSKERKMRYIAELEQKVQILQSEATNLSAQLTMMQRDSAGLA 332
+ DPKRVKR+LANRQSA RS+ RK++YI+ELE+ V LQ+E + LS ++ + + L
Sbjct: 135 IRDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQNEVSVLSPRVAFLDQQRTILT 194
Query: 333 TQNNELKFRLHAMEQQAQLRDALNEALTTEVQRLK 367
N+ LK R+ A+ Q +DA EAL E++RL+
Sbjct: 195 VGNSHLKQRIAALAQDKIFKDAHQEALRKEIERLR 229
>Os02g0247100 Similar to BZIP protein BZO2H3 (Fragment)
Length = 269
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 62/93 (66%)
Query: 275 DPKRVKRVLANRQSAARSKERKMRYIAELEQKVQILQSEATNLSAQLTMMQRDSAGLATQ 334
DPKRVKR+LANRQSA RS+ RK++YI+ELE+ V LQ E + LS ++ + + L
Sbjct: 140 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQMEVSALSPRVAFLDHQRSLLTVG 199
Query: 335 NNELKFRLHAMEQQAQLRDALNEALTTEVQRLK 367
N+ LK R+ A+ Q +DA EAL E++RL+
Sbjct: 200 NSHLKQRIAALAQDKIFKDAHQEALKKEIERLR 232
>Os01g0211800 Similar to VirE2-interacting protein VIP1
Length = 330
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 56/89 (62%)
Query: 269 AEMALADPKRVKRVLANRQSAARSKERKMRYIAELEQKVQILQSEATNLSAQLTMMQRDS 328
A A DPKRVKR+LANRQSA RS+ RK++YI+ELE+ V LQ+E + LS ++ +
Sbjct: 182 ASPATVDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSALSPRVAFLDHQR 241
Query: 329 AGLATQNNELKFRLHAMEQQAQLRDALNE 357
+ L N+ LK R+ A+ Q +D E
Sbjct: 242 SLLTLGNSHLKQRIAALAQDKIFKDGGTE 270
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.128 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,879,380
Number of extensions: 456174
Number of successful extensions: 2143
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 2134
Number of HSP's successfully gapped: 13
Length of query: 426
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 322
Effective length of database: 11,605,545
Effective search space: 3736985490
Effective search space used: 3736985490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 157 (65.1 bits)