Os03g0336200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transcription factor RF2b.
FiT-DB / Search/ Help/ Sample detail
|
Os03g0336200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Transcription factor RF2b.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 100.16 | 0.47 | 5.54 | -1.68 | 1.06 | -0.54 | -0.0171 | -5.15 | 0.411 | 0.62 | 4.8 | 2857 | -- | -- |
| 109.55 | 0.487 | 5.64 | -1.65 | 1.06 | 0.236 | -0.0619 | -- | 0.297 | 0.669 | 5.696 | 2470 | -- | -- |
| 100.14 | 0.466 | 5.55 | -1.69 | 1.06 | -0.532 | -- | -5.06 | 0.411 | 0.614 | 4.7 | 2861 | -- | -- |
| 107.89 | 0.484 | 5.63 | -1.53 | 1.06 | 0.425 | -- | -- | 0.355 | 0.658 | 7.2 | 2423 | -- | -- |
| 170.05 | 0.607 | 5.53 | -1.64 | -- | -0.44 | -- | -5.07 | 0.427 | -- | 4.698 | 2978 | -- | -- |
| 110.63 | 0.493 | 5.64 | -1.66 | 1.08 | -- | -0.0537 | -- | 0.32 | 0.601 | -- | -- | -- | -- |
| 110.64 | 0.493 | 5.64 | -1.65 | 1.08 | -- | -- | -- | 0.32 | 0.599 | -- | -- | -- | -- |
| 164.42 | 0.597 | 5.63 | -1.57 | -- | 0.774 | -- | -- | 0.166 | -- | 3.547 | 942 | -- | -- |
| 135.48 | 0.542 | 5.57 | -- | 1.03 | 1.15 | -- | -- | 0.486 | 1.1 | 8.882 | 14295 | -- | -- |
| 183.81 | 0.634 | 5.62 | -1.61 | -- | -- | -- | -- | 0.339 | -- | -- | -- | -- | -- |
| 182.66 | 0.632 | 5.59 | -- | 1.06 | -- | -- | -- | 0.504 | 0.523 | -- | -- | -- | -- |
| 202.64 | 0.663 | 5.58 | -- | -- | 1.17 | -- | -- | 0.495 | -- | 8.803 | 16631 | -- | -- |
| 252.6 | 0.742 | 5.58 | -- | -- | -- | -- | -- | 0.518 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 99.56 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 16 |
| 2 | 100.03 | temperature | 20 | 270 | > th | dose independent | rect. | 14 | 18 |
| 10 | 100.70 | wind | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 14 | 100.91 | wind | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 21 | 101.15 | wind | 5 | 4320 | < th | dose independent | rect. | 17 | 10 |
| 23 | 101.23 | wind | 5 | 4320 | > th | dose independent | rect. | 17 | 11 |
| 29 | 101.46 | wind | 3 | 4320 | > th | dose dependent | rect. | 17 | 10 |
| 36 | 101.61 | wind | 5 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 47 | 101.71 | wind | 3 | 4320 | > th | dose dependent | rect. | 19 | 2 |
| 57 | 101.77 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 62 | 101.84 | wind | 1 | 43200 | > th | dose independent | rect. | 20 | 9 |
| 80 | 102.03 | wind | 5 | 1440 | > th | dose independent | sin | 14 | NA |
| 86 | 102.06 | wind | 5 | 4320 | < th | dose independent | sin | 13 | NA |
| 99 | 102.18 | wind | 5 | 1440 | > th | dose independent | rect. | 16 | 17 |
| 102 | 102.19 | humidity | 90 | 4320 | > th | dose dependent | rect. | 6 | 3 |
| 110 | 102.23 | wind | 5 | 1440 | > th | dose dependent | rect. | 17 | 16 |
| 122 | 102.30 | wind | 5 | 1440 | < th | dose independent | rect. | 16 | 17 |
| 146 | 102.39 | wind | 5 | 1440 | > th | dose dependent | sin | 12 | NA |
| 156 | 102.42 | wind | 5 | 1440 | > th | dose independent | rect. | 11 | 16 |
| 168 | 102.45 | wind | 5 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 197 | 102.49 | wind | 5 | 1440 | > th | dose independent | rect. | 11 | 21 |
| 237 | 102.56 | wind | 5 | 1440 | < th | dose independent | rect. | 11 | 21 |
| 241 | 102.57 | wind | 5 | 1440 | > th | dose independent | rect. | 13 | 20 |
| 248 | 102.59 | wind | 7 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 255 | 102.60 | wind | 5 | 1440 | < th | dose independent | rect. | 16 | 22 |
| 258 | 102.61 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 10 |
| 260 | 102.61 | wind | 5 | 1440 | > th | dose independent | rect. | 13 | 14 |
| 270 | 102.62 | wind | 5 | 1440 | > th | dose independent | rect. | 16 | 22 |
| 360 | 102.72 | temperature | 10 | 90 | > th | dose dependent | rect. | 17 | 16 |
| 432 | 102.83 | atmosphere | 1015 | 90 | < th | dose independent | rect. | 17 | 16 |
| 456 | 102.84 | temperature | 20 | 10 | > th | dose independent | rect. | 13 | 23 |
| 483 | 102.89 | wind | 9 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 491 | 102.90 | wind | 5 | 1440 | > th | dose independent | no | NA | NA |
| 492 | 102.90 | wind | 5 | 1440 | < th | dose independent | no | NA | NA |
| 497 | 102.90 | wind | 3 | 1440 | > th | dose dependent | rect. | 11 | 16 |
| 509 | 102.93 | wind | 5 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 510 | 102.93 | radiation | 1 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 516 | 102.94 | radiation | 10 | 4320 | < th | dose dependent | rect. | 21 | 8 |
| 519 | 102.95 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 2 |
| 525 | 102.95 | wind | 5 | 1440 | > th | dose independent | rect. | 19 | 23 |
| 555 | 103.02 | wind | 5 | 1440 | > th | dose independent | rect. | 2 | 23 |
| 556 | 103.02 | wind | 5 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 557 | 103.03 | wind | 7 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 564 | 103.04 | wind | 9 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 576 | 103.05 | wind | 5 | 1440 | > th | dose independent | rect. | 24 | 23 |
| 593 | 103.08 | wind | 5 | 1440 | < th | dose independent | rect. | 24 | 23 |
| 605 | 103.10 | wind | 5 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 625 | 103.12 | wind | 7 | 1440 | < th | dose dependent | rect. | 10 | 17 |
| 633 | 103.14 | radiation | 40 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 676 | 103.18 | temperature | 20 | 270 | < th | dose independent | rect. | 6 | 20 |
| 726 | 103.25 | wind | 3 | 1440 | > th | dose dependent | rect. | 17 | 22 |
| 730 | 103.26 | wind | 9 | 14400 | > th | dose dependent | rect. | 6 | 5 |
| 749 | 103.28 | wind | 9 | 4320 | < th | dose dependent | rect. | 17 | 10 |
| 750 | 103.29 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 765 | 103.30 | wind | 9 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 768 | 103.30 | wind | 1 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 788 | 103.33 | radiation | 40 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 823 | 103.34 | wind | 5 | 1440 | < th | dose dependent | rect. | 10 | 4 |
| 860 | 103.38 | humidity | 90 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 883 | 103.41 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 929 | 103.46 | wind | 9 | 4320 | < th | dose dependent | rect. | 18 | 3 |
| 932 | 103.46 | wind | 3 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 940 | 103.48 | wind | 3 | 1440 | > th | dose dependent | no | NA | NA |
| 949 | 103.49 | wind | 1 | 43200 | < th | dose independent | sin | 13 | NA |
| 956 | 103.50 | humidity | 70 | 14400 | > th | dose independent | rect. | 21 | 10 |
| 959 | 103.50 | wind | 9 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 964 | 103.51 | wind | 7 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 970 | 103.51 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 22 |
| 978 | 103.52 | radiation | 1 | 4320 | < th | dose independent | rect. | 7 | 2 |
| 985 | 103.52 | humidity | 50 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 988 | 103.52 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 993 | 103.53 | radiation | 1 | 4320 | > th | dose independent | rect. | 7 | 2 |