BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0336200 Os03g0336200|AK070466
(329 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0336200 Transcription factor RF2b 451 e-127
Os07g0679500 Similar to Transcription factor RF2b 323 9e-89
Os12g0162500 Similar to BZIP-like protein 181 5e-46
Os09g0516200 Transcription factor RF2a. Splice isoform 2 178 6e-45
Os08g0543900 Similar to Transcription factor RF2b 175 4e-44
Os03g0127500 Eukaryotic transcription factor, DNA-binding d... 165 4e-41
Os10g0531900 Similar to BZIP-like protein 163 1e-40
Os11g0160500 BZIP-like protein 157 7e-39
Os04g0181300 115 3e-26
AF467732 96 4e-20
Os01g0756200 Similar to VirE2-interacting protein VIP1 91 1e-18
Os02g0247100 Similar to BZIP protein BZO2H3 (Fragment) 90 2e-18
Os01g0211800 Similar to VirE2-interacting protein VIP1 82 4e-16
>Os03g0336200 Transcription factor RF2b
Length = 329
Score = 451 bits (1159), Expect = e-127, Method: Compositional matrix adjust.
Identities = 235/314 (74%), Positives = 235/314 (74%)
Query: 1 MQEPKHTDPXXXXXXXXXXXXSEVAFRLPXXXXXXXXXXXXFDEIGSEDDLFSTFMDIEK 60
MQEPKHTDP SEVAFRLP FDEIGSEDDLFSTFMDIEK
Sbjct: 1 MQEPKHTDPAAMRGAHHRRARSEVAFRLPDDLDLGGGGAGAFDEIGSEDDLFSTFMDIEK 60
Query: 61 IXXXXXXXXXXXXXXXXETXXXXXXXXXXXXXVDGSGFFXXXXXXXXXXXXEVMEAKKAM 120
I ET VDGSGFF EVMEAKKAM
Sbjct: 61 ISSGPAAAGGSDRDRAAETSSPPRPKHRHSSSVDGSGFFAAARKDAAASLAEVMEAKKAM 120
Query: 121 TPEQLSELAAIDPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTL 180
TPEQLSELAAIDPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTL
Sbjct: 121 TPEQLSELAAIDPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTL 180
Query: 181 FQRDTTGLSAENAELKIRLQAMEQQAQLRDALNDALKQELERLKLATGEMTNSNETYSMG 240
FQRDTTGLSAENAELKIRLQAMEQQAQLRDALNDALKQELERLKLATGEMTNSNETYSMG
Sbjct: 181 FQRDTTGLSAENAELKIRLQAMEQQAQLRDALNDALKQELERLKLATGEMTNSNETYSMG 240
Query: 241 LQHVPYNTPFFPLAQHNAARQNGGTXXXXXXXXXXXXXXNHMLSHPNGLQDIMQQDPLGR 300
LQHVPYNTPFFPLAQHNAARQNGGT NHMLSHPNGLQDIMQQDPLGR
Sbjct: 241 LQHVPYNTPFFPLAQHNAARQNGGTQLPPQFQPPRPNVPNHMLSHPNGLQDIMQQDPLGR 300
Query: 301 LQGLDISKGPLVVK 314
LQGLDISKGPLVVK
Sbjct: 301 LQGLDISKGPLVVK 314
>Os07g0679500 Similar to Transcription factor RF2b
Length = 330
Score = 323 bits (829), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 183/310 (59%), Positives = 200/310 (64%), Gaps = 27/310 (8%)
Query: 22 SEVAFRLPXXXXXXXXXXXX-FDEIGSEDDLFSTFMDIEKIXXXXXXXXXXXXXXXXETX 80
SEVAFR P FDEIGSEDDLFSTFMD+EKI T
Sbjct: 8 SEVAFRFPDDLGLGGGADGGGFDEIGSEDDLFSTFMDMEKIAGADRDRAAETSSPPRPTK 67
Query: 81 XXXXXXXXXXXXV--------------DGSGFFXXXXXXXXXXXXEVMEAKKAMTPEQLS 126
DG+G EVMEAKKAM+ EQL+
Sbjct: 68 HRHSASFDGFAFGAGAGGPGPGLGKQQDGAG----------GVFSEVMEAKKAMSSEQLA 117
Query: 127 ELAAIDPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLFQRDTT 186
ELAAIDPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLFQRDTT
Sbjct: 118 ELAAIDPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLFQRDTT 177
Query: 187 GLSAENAELKIRLQAMEQQAQLRDALNDALKQELERLKLATGEMTNSNETYSMGLQHVPY 246
GLSAENAELKIRLQAMEQQAQLRDALNDALKQE+ERLK+ATGEM SN+ Y+ G+Q VPY
Sbjct: 178 GLSAENAELKIRLQAMEQQAQLRDALNDALKQEVERLKIATGEMAKSNDAYNTGMQQVPY 237
Query: 247 NTPFFPLAQHNAARQNGGTXX--XXXXXXXXXXXXNHMLSHPNGLQDIMQQDPLGRLQGL 304
+ FF L+ +A + + G + MLSHPN L D+MQQD LGRLQGL
Sbjct: 238 SPSFFQLSDQHAVQHHAGVQQLPHQFQQPHPSVPSHQMLSHPNSLSDMMQQDSLGRLQGL 297
Query: 305 DISKGPLVVK 314
DI KGP+ VK
Sbjct: 298 DIGKGPVAVK 307
>Os12g0162500 Similar to BZIP-like protein
Length = 328
Score = 181 bits (460), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 96/136 (70%), Positives = 116/136 (85%), Gaps = 3/136 (2%)
Query: 116 AKKAMTPEQLSELAAIDPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLS 175
AKKAM E+++ELA IDPKRAKRILANRQSAARSKERK +Y +ELERKVQTLQTEATTLS
Sbjct: 146 AKKAMPAERIAELALIDPKRAKRILANRQSAARSKERKIKYTSELERKVQTLQTEATTLS 205
Query: 176 AQLTLFQRDTTGLSAENAELKIRLQAMEQQAQLRDALNDALKQELERLKLATGEMTNSN- 234
AQLTL QRDT+GL+AEN ELK+RLQ+ME+QA+LRDALN+AL++E++RLK+A G+ N N
Sbjct: 206 AQLTLLQRDTSGLTAENRELKLRLQSMEEQAKLRDALNEALREEVQRLKIAAGQAPNMNG 265
Query: 235 ETYSMGLQH--VPYNT 248
++ GLQ PY T
Sbjct: 266 NPFNGGLQQQIPPYYT 281
>Os09g0516200 Transcription factor RF2a. Splice isoform 2
Length = 368
Score = 178 bits (451), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 99/187 (52%), Positives = 121/187 (64%), Gaps = 3/187 (1%)
Query: 47 SEDDLFSTFMDIEKIXXXXXXXXXXXXXXXXETXXXXXXXXXXXXXVDGSGFFXXXXXXX 106
++++LFS F+D+EK+ +D S
Sbjct: 81 NDEELFSMFLDVEKLNSTCGASSEAEAESSSAAAHGARPKHQHSLSMDESMSIKAEELVG 140
Query: 107 XXXXXEVM---EAKKAMTPEQLSELAAIDPKRAKRILANRQSAARSKERKARYITELERK 163
E M EAKKA++ +L+ELA +DPKRAKRI ANRQSAARSKERK RYI ELERK
Sbjct: 141 ASPGTEGMSSAEAKKAVSAAKLAELALVDPKRAKRIWANRQSAARSKERKMRYIAELERK 200
Query: 164 VQTLQTEATTLSAQLTLFQRDTTGLSAENAELKIRLQAMEQQAQLRDALNDALKQELERL 223
VQTLQTEATTLSAQL L QRDT+GL+ EN+ELK+RLQ MEQQ L+DALND LK E++RL
Sbjct: 201 VQTLQTEATTLSAQLALLQRDTSGLTTENSELKLRLQTMEQQVHLQDALNDTLKSEVQRL 260
Query: 224 KLATGEM 230
K+ATG+M
Sbjct: 261 KVATGQM 267
>Os08g0543900 Similar to Transcription factor RF2b
Length = 464
Score = 175 bits (443), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 106/128 (82%), Gaps = 2/128 (1%)
Query: 115 EAKKAMTPEQLSELAAIDPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTL 174
E KK M E+L+E+A DPKR KRILANRQSAARSKERK RYI ELE KVQ LQTEATTL
Sbjct: 303 EKKKIMANERLAEIALTDPKRVKRILANRQSAARSKERKMRYIQELEHKVQVLQTEATTL 362
Query: 175 SAQLTLFQRDTTGLSAENAELKIRLQAMEQQAQLRDALNDALKQELERLKLATGEMTNSN 234
SAQLT+ QRD+TGL+ +N ELKIRLQAMEQQAQLRDALN+AL E++RLKLATGE+T+
Sbjct: 363 SAQLTMLQRDSTGLATQNNELKIRLQAMEQQAQLRDALNEALTAEVQRLKLATGEITDGR 422
Query: 235 ETYSMGLQ 242
S GLQ
Sbjct: 423 --MSKGLQ 428
>Os03g0127500 Eukaryotic transcription factor, DNA-binding domain containing
protein
Length = 426
Score = 165 bits (418), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 93/165 (56%), Positives = 114/165 (69%), Gaps = 18/165 (10%)
Query: 115 EAKKAMTPEQLSELAAIDPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTL 174
E KK M E+L+E+A DPKR KR+LANRQSAARSKERK RYI ELE+KVQ LQ+EAT L
Sbjct: 258 EMKKIMADEKLAEMALADPKRVKRVLANRQSAARSKERKMRYIAELEQKVQILQSEATNL 317
Query: 175 SAQLTLFQRDTTGLSAENAELKIRLQAMEQQAQLRDALNDALKQELERLKLATGEMTNSN 234
SAQLT+ QRD+ GL+ +N ELK RL AMEQQAQLRDALN+AL E++RLKLAT E+ +S
Sbjct: 318 SAQLTMMQRDSAGLATQNNELKFRLHAMEQQAQLRDALNEALTTEVQRLKLATAELGDSC 377
Query: 235 ETYSMGLQHVPYNT---------------PFFPL--AQHNAARQN 262
+ S+ Q + N PF+ L +Q N A +N
Sbjct: 378 SSSSLA-QQIQLNAQNQMFQLQQQQATQIPFYQLQQSQQNGAAKN 421
>Os10g0531900 Similar to BZIP-like protein
Length = 400
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 82/128 (64%), Positives = 105/128 (82%)
Query: 115 EAKKAMTPEQLSELAAIDPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTL 174
E K+ M E+L+E+A DPKR KR+LANRQSAARSKER+ RYI ELE+KVQ LQTEATTL
Sbjct: 229 EMKRIMADEKLAEMALADPKRVKRVLANRQSAARSKERRMRYIAELEQKVQILQTEATTL 288
Query: 175 SAQLTLFQRDTTGLSAENAELKIRLQAMEQQAQLRDALNDALKQELERLKLATGEMTNSN 234
SAQLTL QRD++G++ +N ELK RLQ+MEQQAQLRDALN+AL E++RLKLA E+ +++
Sbjct: 289 SAQLTLLQRDSSGMATQNNELKFRLQSMEQQAQLRDALNEALTAEVQRLKLAANEVCDTS 348
Query: 235 ETYSMGLQ 242
+ ++ Q
Sbjct: 349 SSSNLAHQ 356
>Os11g0160500 BZIP-like protein
Length = 200
Score = 157 bits (398), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 112/127 (88%), Gaps = 1/127 (0%)
Query: 116 AKKAMTPEQLSELAAIDPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLS 175
AKKAM ++L+ELA +DPKRAKRILANRQSAARSKERK +Y ELERKVQTLQTEATTLS
Sbjct: 18 AKKAMPADRLAELALLDPKRAKRILANRQSAARSKERKIKYTGELERKVQTLQTEATTLS 77
Query: 176 AQLTLFQRDTTGLSAENAELKIRLQAMEQQAQLRDALNDALKQELERLKLATGEMTNSN- 234
QLTL QRDT+GL+AEN ELK+RLQ+ME+QA+LRDALNDAL++E++RLK+A G++ N N
Sbjct: 78 TQLTLLQRDTSGLTAENRELKLRLQSMEEQAKLRDALNDALREEVQRLKIAAGQVPNMNG 137
Query: 235 ETYSMGL 241
+++ GL
Sbjct: 138 NSFNGGL 144
>Os04g0181300
Length = 426
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 82/120 (68%)
Query: 115 EAKKAMTPEQLSELAAIDPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTL 174
E KK + + LSE+ DP+R KRIL NR SA +SKE+K +++ EL+RK+Q LQ+E TTL
Sbjct: 273 EKKKIVMDKSLSEIVLTDPRRVKRILNNRASATKSKEKKMKHVGELQRKLQVLQSETTTL 332
Query: 175 SAQLTLFQRDTTGLSAENAELKIRLQAMEQQAQLRDALNDALKQELERLKLATGEMTNSN 234
AQ+T+ QR+ L ++N ELK RLQAM+Q AQL DAL L E + L+ E+++ N
Sbjct: 333 GAQVTVMQRNNNELVSQNNELKTRLQAMDQLAQLGDALTSRLAAEAQHLRAVVSEISDPN 392
>AF467732
Length = 186
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/83 (63%), Positives = 61/83 (73%), Gaps = 1/83 (1%)
Query: 115 EAKKAMTPEQLSELAAIDPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTL 174
E KK M E+L+E+A DPKR KRILANRQSAARSKERK RYI +LE KVQ LQTEA+TL
Sbjct: 96 EKKKIMANERLAEIALTDPKRVKRILANRQSAARSKERKMRYIQKLEHKVQVLQTEASTL 155
Query: 175 SAQLTLFQRDTTGLSAENAELKI 197
S L +R T S +N ELK+
Sbjct: 156 SHSLKCLRR-TPWTSPQNNELKL 177
>Os01g0756200 Similar to VirE2-interacting protein VIP1
Length = 265
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 64/93 (68%)
Query: 132 DPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLFQRDTTGLSAE 191
DPKR KRILANRQSA RS+ RK +YI+ELER V TLQ E + LS ++ + T L+
Sbjct: 137 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQNEVSVLSPRVAFLDQQRTILTVG 196
Query: 192 NAELKIRLQAMEQQAQLRDALNDALKQELERLK 224
N+ LK R+ A+ Q +DA +AL++E+ERL+
Sbjct: 197 NSHLKQRIAALAQDKIFKDAHQEALRKEIERLR 229
>Os02g0247100 Similar to BZIP protein BZO2H3 (Fragment)
Length = 269
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 63/93 (67%)
Query: 132 DPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLFQRDTTGLSAE 191
DPKR KRILANRQSA RS+ RK +YI+ELER V TLQ E + LS ++ + L+
Sbjct: 140 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQMEVSALSPRVAFLDHQRSLLTVG 199
Query: 192 NAELKIRLQAMEQQAQLRDALNDALKQELERLK 224
N+ LK R+ A+ Q +DA +ALK+E+ERL+
Sbjct: 200 NSHLKQRIAALAQDKIFKDAHQEALKKEIERLR 232
>Os01g0211800 Similar to VirE2-interacting protein VIP1
Length = 330
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 58/91 (63%)
Query: 121 TPEQLSELAAIDPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTL 180
TP Q + A +DPKR KRILANRQSA RS+ RK +YI+ELER V +LQTE + LS ++
Sbjct: 177 TPGQPASPATVDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSALSPRVAF 236
Query: 181 FQRDTTGLSAENAELKIRLQAMEQQAQLRDA 211
+ L+ N+ LK R+ A+ Q +D
Sbjct: 237 LDHQRSLLTLGNSHLKQRIAALAQDKIFKDG 267
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.129 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,406,146
Number of extensions: 174907
Number of successful extensions: 782
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 781
Number of HSP's successfully gapped: 14
Length of query: 329
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 228
Effective length of database: 11,762,187
Effective search space: 2681778636
Effective search space used: 2681778636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 156 (64.7 bits)