BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0543900 Os08g0543900|Os08g0543900
(464 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G38900.1 | chr4:18139564-18141520 REVERSE LENGTH=554 259 3e-69
AT2G21230.3 | chr2:9093920-9096059 REVERSE LENGTH=526 214 1e-55
AT2G40620.1 | chr2:16954804-16956872 REVERSE LENGTH=368 170 1e-42
AT1G06850.1 | chr1:2105233-2106518 FORWARD LENGTH=338 170 1e-42
AT1G06070.1 | chr1:1835201-1837116 REVERSE LENGTH=424 164 1e-40
AT2G31370.3 | chr2:13379448-13381072 FORWARD LENGTH=399 164 1e-40
AT1G43700.1 | chr1:16484352-16486017 FORWARD LENGTH=342 159 3e-39
AT2G12900.1 | chr2:5293897-5295480 FORWARD LENGTH=265 108 7e-24
AT2G12940.1 | chr2:5317513-5319089 FORWARD LENGTH=295 105 5e-23
AT2G13150.1 | chr2:5437056-5438459 FORWARD LENGTH=263 100 3e-21
AT3G58120.1 | chr3:21521289-21523078 REVERSE LENGTH=330 88 1e-17
AT2G42380.2 | chr2:17647205-17648660 REVERSE LENGTH=322 87 2e-17
AT2G21235.1 | chr2:9096592-9098767 REVERSE LENGTH=551 73 4e-13
AT1G58110.1 | chr1:21515919-21517374 REVERSE LENGTH=375 61 1e-09
AT5G04840.1 | chr5:1406005-1407648 FORWARD LENGTH=308 54 2e-07
AT5G07160.1 | chr5:2219971-2220709 REVERSE LENGTH=151 51 2e-06
AT1G35490.1 | chr1:13061856-13063166 FORWARD LENGTH=301 50 2e-06
>AT4G38900.1 | chr4:18139564-18141520 REVERSE LENGTH=554
Length = 553
Score = 259 bits (661), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 168/332 (50%), Positives = 200/332 (60%), Gaps = 53/332 (15%)
Query: 136 HRRSQSDIPFGFSHL-----------------SXXXXXXXXVKREAATAAEGCRSDGDDF 178
HRRS SDIP GF+ + + VK+E++ EG G+
Sbjct: 169 HRRSNSDIPSGFNSMPLIPPRPLERSFSGGECADWSKSNPFVKKESSCEREGV---GERE 225
Query: 179 ALYDLVNSYMDLDGMEALNSSE-----ERHEDRD----SRASGTRTG---------SVAD 220
A+ DL ++YM+L+ ++ LNSSE +E+RD SRASGT+T SV +
Sbjct: 226 AMDDLFSAYMNLENIDVLNSSEADDSKNGNENRDDMESSRASGTKTNGSDTEGESSSVNE 285
Query: 221 SSENEAESHST---PVERKDGGG----KSRHCRSLSVDS-FIEKLNF-DESPKXXXXXXX 271
S+ N S V+R+ GG +RH RS+SVDS F+EKL+F DES K
Sbjct: 286 SANNNMNSSGEKRESVKRRAAGGDIAPTTRHYRSVSVDSCFMEKLSFGDESLKPPPSPGS 345
Query: 272 XXXXXXXXXXXXXXXXXXXXXEFANGEFTEAEKKKIMANERLAEIALTDPKRVKR----- 326
EF NGEFT AE KKIMAN++LAE+A++DPKRVKR
Sbjct: 346 MSRKVSPTNSVDGNSGAAFSIEFNNGEFTAAEMKKIMANDKLAEMAMSDPKRVKRNDPLF 405
Query: 327 -ILANRQSAARSKERKMRYIQELEHKVQVLQTEATTLSAQLTMLQRDSTGLATQNNELKI 385
ILANRQSAARSKERKMRYI ELEHKVQ LQTEATTLSAQLT+LQRD GL QNNELK
Sbjct: 406 RILANRQSAARSKERKMRYIVELEHKVQTLQTEATTLSAQLTLLQRDMMGLTNQNNELKF 465
Query: 386 RLQAMEQQAQLRDALNEALTAEVQRLKLATGE 417
RLQAMEQQA+LRDALNEAL EVQRLKLA GE
Sbjct: 466 RLQAMEQQARLRDALNEALNGEVQRLKLAIGE 497
>AT2G21230.3 | chr2:9093920-9096059 REVERSE LENGTH=526
Length = 525
Score = 214 bits (544), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 148/332 (44%), Positives = 177/332 (53%), Gaps = 52/332 (15%)
Query: 136 HRRSQSDIPFGFSHLSXXXX-------------------XXXXVKREAATAAEGCRSDGD 176
HRRS SD+ FGFS + VK+E R
Sbjct: 144 HRRSNSDVTFGFSSMMSQNQKSPPLSSLERSISGEDTSDWSNLVKKEPREGFYKGRKPEV 203
Query: 177 DFALYDLVNSYMDLDGMEALNS---------SEERHEDRDSRASGTRTGSVADSSENEA- 226
+ A+ D+ +YM+LD ++ LNS +E E SR SGT+ + SS++E
Sbjct: 204 EAAMDDVFTAYMNLDNIDVLNSFGGEDGKNGNENVEEMESSRGSGTKKTNGGSSSDSEGD 263
Query: 227 -----------ESHSTPVERKDGGG---KSRHCRSLSVDS-FIEKLNFDESPKXXXXXXX 271
S S+ V+R+ GG RH RS+S+DS F+ KLNF + +
Sbjct: 264 SSASGNVKVALSSSSSGVKRRAGGDIAPTGRHYRSVSMDSCFMGKLNFGD--ESSLKLPP 321
Query: 272 XXXXXXXXXXXXXXXXXXXXXEFANGEFTEAEKKKIMANERLAEIALTDPKRVKRILANR 331
EF N EFT AE KKI A+E+LAEI + DPKRVKRILANR
Sbjct: 322 SSSAKVSPTNSGEGNSSAYSVEFGNSEFTAAEMKKIAADEKLAEIVMADPKRVKRILANR 381
Query: 332 QSAARSKERKMRYIQELEHKVQVLQTEATTLSAQLTMLQRDSTGLATQNNELKIRLQAME 391
SAARSKERK RY+ ELEHKVQ LQTEATTLSAQLT LQRDS GL QN+ELK RLQAME
Sbjct: 382 VSAARSKERKTRYMAELEHKVQTLQTEATTLSAQLTHLQRDSMGLTNQNSELKFRLQAME 441
Query: 392 QQAQLRDA------LNEALTAEVQRLKLATGE 417
QQAQLRD L+E L EVQRLKL GE
Sbjct: 442 QQAQLRDGMHIIKTLSEKLNEEVQRLKLVIGE 473
>AT2G40620.1 | chr2:16954804-16956872 REVERSE LENGTH=368
Length = 367
Score = 170 bits (431), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/117 (71%), Positives = 100/117 (85%)
Query: 303 EKKKIMANERLAEIALTDPKRVKRILANRQSAARSKERKMRYIQELEHKVQVLQTEATTL 362
E KK MA ++LAE+ + DPKR KRI+ANRQSAARSKERK RYI ELE KVQ LQTEATTL
Sbjct: 131 EAKKAMAPDKLAELWVVDPKRAKRIIANRQSAARSKERKARYILELERKVQTLQTEATTL 190
Query: 363 SAQLTMLQRDSTGLATQNNELKIRLQAMEQQAQLRDALNEALTAEVQRLKLATGEIT 419
SAQL++ QRD+TGL+++N ELK+RLQ MEQQA+LRDALNE L EV+RLK ATGE++
Sbjct: 191 SAQLSLFQRDTTGLSSENTELKLRLQVMEQQAKLRDALNEQLKKEVERLKFATGEVS 247
>AT1G06850.1 | chr1:2105233-2106518 FORWARD LENGTH=338
Length = 337
Score = 170 bits (431), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 88/123 (71%), Positives = 102/123 (82%), Gaps = 2/123 (1%)
Query: 297 GEFTEAEKKKIMANERLAEIALTDPKRVKRILANRQSAARSKERKMRYIQELEHKVQVLQ 356
G+ +A KK M E+L+E+ DPKR KRILANRQSAARSKERK RYIQELE KVQ LQ
Sbjct: 127 GDIMDA--KKAMPPEKLSELWNIDPKRAKRILANRQSAARSKERKARYIQELERKVQSLQ 184
Query: 357 TEATTLSAQLTMLQRDSTGLATQNNELKIRLQAMEQQAQLRDALNEALTAEVQRLKLATG 416
TEATTLSAQLT+ QRD+ GLA +N ELK+RLQAMEQQAQLR+ALNEAL EV+R+K+ TG
Sbjct: 185 TEATTLSAQLTLYQRDTNGLANENTELKLRLQAMEQQAQLRNALNEALRKEVERMKMETG 244
Query: 417 EIT 419
EI+
Sbjct: 245 EIS 247
>AT1G06070.1 | chr1:1835201-1837116 REVERSE LENGTH=424
Length = 423
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/123 (65%), Positives = 98/123 (79%)
Query: 295 ANGEFTEAEKKKIMANERLAEIALTDPKRVKRILANRQSAARSKERKMRYIQELEHKVQV 354
N + + + KK ++ +L+E+AL DPKR KRI ANRQSAARSKERKMRYI ELE KVQ
Sbjct: 185 GNEDVSGVDSKKAISAAKLSELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQT 244
Query: 355 LQTEATTLSAQLTMLQRDSTGLATQNNELKIRLQAMEQQAQLRDALNEALTAEVQRLKLA 414
LQTEAT+LSAQLT+LQRD+ GL +NNELK+R+Q MEQQ L+DALN+AL EVQ LK+
Sbjct: 245 LQTEATSLSAQLTLLQRDTNGLGVENNELKLRVQTMEQQVHLQDALNDALKEEVQHLKVL 304
Query: 415 TGE 417
TG+
Sbjct: 305 TGQ 307
>AT2G31370.3 | chr2:13379448-13381072 FORWARD LENGTH=399
Length = 398
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 82/122 (67%), Positives = 96/122 (78%)
Query: 305 KKIMANERLAEIALTDPKRVKRILANRQSAARSKERKMRYIQELEHKVQVLQTEATTLSA 364
KK M+ +LAE+AL DPKR KRI ANRQSAARSKERK RYI ELE KVQ LQTEATTLSA
Sbjct: 186 KKSMSATKLAELALIDPKRAKRIWANRQSAARSKERKTRYIFELERKVQTLQTEATTLSA 245
Query: 365 QLTMLQRDSTGLATQNNELKIRLQAMEQQAQLRDALNEALTAEVQRLKLATGEITDGRMS 424
QLT+LQRD+ GL +NNELK+RLQ MEQQ L+D LNEAL E+Q LK+ TG++ ++
Sbjct: 246 QLTLLQRDTNGLTVENNELKLRLQTMEQQVHLQDELNEALKEEIQHLKVLTGQVAPSALN 305
Query: 425 KG 426
G
Sbjct: 306 YG 307
>AT1G43700.1 | chr1:16484352-16486017 FORWARD LENGTH=342
Length = 341
Score = 159 bits (402), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 96/187 (51%), Positives = 113/187 (60%), Gaps = 8/187 (4%)
Query: 243 RHCRSLSVDS-FIEKLNFDESPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXEF------A 295
RH RS SVDS F + L E F A
Sbjct: 109 RHVRSFSVDSDFFDDLGVTEEKFIATSSGEKKKGNHHHSRSNSMDGEMSSASFNIESILA 168
Query: 296 NGEFTEAEKKKI-MANERLAEIALTDPKRVKRILANRQSAARSKERKMRYIQELEHKVQV 354
+ ++ KK + M +RLAE+AL DPKR KRILANRQSAARSKERK+RY ELE KVQ
Sbjct: 169 SVSGKDSGKKNMGMGGDRLAELALLDPKRAKRILANRQSAARSKERKIRYTGELERKVQT 228
Query: 355 LQTEATTLSAQLTMLQRDSTGLATQNNELKIRLQAMEQQAQLRDALNEALTAEVQRLKLA 414
LQ EATTLSAQ+TMLQR ++ L T+N LK+RLQA+EQQA+LRDALNEAL E+ RLK+
Sbjct: 229 LQNEATTLSAQVTMLQRGTSELNTENKHLKMRLQALEQQAELRDALNEALRDELNRLKVV 288
Query: 415 TGEITDG 421
GEI G
Sbjct: 289 AGEIPQG 295
>AT2G12900.1 | chr2:5293897-5295480 FORWARD LENGTH=265
Length = 264
Score = 108 bits (269), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 90/131 (68%), Gaps = 8/131 (6%)
Query: 293 EFANGEFTEAEKKKIMANERLAEIA--------LTDPKRVKRILANRQSAARSKERKMRY 344
EF + ++T+ E KI + +L +IA ++DPK+V+RIL NR+ AA SK+RK++Y
Sbjct: 81 EFGSSDYTDDELNKIAKSTKLQDIAKSTKLQEIVSDPKKVRRILKNRELAASSKQRKLKY 140
Query: 345 IQELEHKVQVLQTEATTLSAQLTMLQRDSTGLATQNNELKIRLQAMEQQAQLRDALNEAL 404
+ +LEH+++ L+ + + ++ +L++D T L + E+ I+++++EQQAQLRDAL E L
Sbjct: 141 MIDLEHRIKFLENKNALIFEKIKLLEKDKTILMNEKKEITIQIESLEQQAQLRDALTEKL 200
Query: 405 TAEVQRLKLAT 415
E++RLK+ T
Sbjct: 201 HVEIERLKVIT 211
>AT2G12940.1 | chr2:5317513-5319089 FORWARD LENGTH=295
Length = 294
Score = 105 bits (262), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 105/193 (54%), Gaps = 15/193 (7%)
Query: 236 KDGGGKSRHCRSLSVDSFI-EKLNFDESPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXEF 294
KD G RH RS+S+DS + + L SP EF
Sbjct: 75 KDIGPLKRHYRSVSMDSCLSDLLKLTPSP-----------GNTPSSRLVDGDQNASRLEF 123
Query: 295 ANGEFTEAEKKKIMANERLAEIALTDPKRVKRILANRQSAARSKERKMRYIQELEHKVQV 354
++T+ E KI + +L E+AL DPK V+RIL NR+SAA K++K++Y+ LEH++
Sbjct: 124 DANDYTDDELNKIAKSNKLKEVAL-DPKEVRRILKNRESAAHLKQKKLQYMINLEHRINF 182
Query: 355 LQTEATTLSAQLTMLQRDSTGLATQNNELKIRLQAMEQQAQLRDALNEALTAEVQRLK-- 412
++ E ++ ++ +L+ D T + + E+ IR+++ME QAQLRD L E L E +RLK
Sbjct: 183 VENENASIFEKIKLLENDKTMMMNEKKEIMIRIESMEIQAQLRDVLTEHLHGESERLKAA 242
Query: 413 LATGEITDGRMSK 425
L + E +G++ K
Sbjct: 243 LISNENGNGKVQK 255
>AT2G13150.1 | chr2:5437056-5438459 FORWARD LENGTH=263
Length = 262
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 95/171 (55%), Gaps = 13/171 (7%)
Query: 243 RHCRSLSVDSFI-EKLNFDESPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFANGEFTE 301
RH RSLSVDS + + L SP EF +T+
Sbjct: 83 RHYRSLSVDSCLSDLLKLPPSPNNVSSSRSVDGEQNASEL-----------EFDTSVYTD 131
Query: 302 AEKKKIMANERLAEIALTDPKRVKRILANRQSAARSKERKMRYIQELEHKVQVLQTEATT 361
E KI + +L E+A +DPK V+RIL N++SAARSK++K++Y+ LE K+ L+ + +
Sbjct: 132 DELNKIAKSTKLKEVA-SDPKEVRRILKNQESAARSKQKKLQYMINLELKINFLENKNAS 190
Query: 362 LSAQLTMLQRDSTGLATQNNELKIRLQAMEQQAQLRDALNEALTAEVQRLK 412
+ ++ +L+ D T + E+ IR++++EQ A+LRDAL E L E++RLK
Sbjct: 191 IFEKIKLLENDKTMRMNEKKEIMIRIESLEQHAELRDALTEHLHVEIERLK 241
>AT3G58120.1 | chr3:21521289-21523078 REVERSE LENGTH=330
Length = 329
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 61/95 (64%)
Query: 318 LTDPKRVKRILANRQSAARSKERKMRYIQELEHKVQVLQTEATTLSAQLTMLQRDSTGLA 377
+ DPKRVKRILANRQSA RS+ RK++YI ELE V LQTE + LS ++ L L
Sbjct: 200 IHDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSVLSPRVAFLDHQRLLLN 259
Query: 378 TQNNELKIRLQAMEQQAQLRDALNEALTAEVQRLK 412
N+ +K R+ A+ Q +DA EAL E++RL+
Sbjct: 260 VDNSAIKQRIAALAQDKIFKDAHQEALKREIERLR 294
>AT2G42380.2 | chr2:17647205-17648660 REVERSE LENGTH=322
Length = 321
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 60/95 (63%)
Query: 318 LTDPKRVKRILANRQSAARSKERKMRYIQELEHKVQVLQTEATTLSAQLTMLQRDSTGLA 377
+ DPKRVKRILANRQSA RS+ RK++YI ELE V LQ E + LS ++ L L
Sbjct: 184 ILDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLN 243
Query: 378 TQNNELKIRLQAMEQQAQLRDALNEALTAEVQRLK 412
N+ LK R+ A+ Q +DA EAL E++RL+
Sbjct: 244 VDNSALKQRIAALSQDKLFKDAHQEALKREIERLR 278
>AT2G21235.1 | chr2:9096592-9098767 REVERSE LENGTH=551
Length = 550
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 68/129 (52%), Gaps = 31/129 (24%)
Query: 320 DPKRVKRILANRQSAARSKERKMRYIQELEHKVQVLQTEATTLSAQLTMLQRDSTGLATQ 379
D K+ KR+LANR SAARSKE + + I+++E +V+ L+ +L +T+L++++ + +
Sbjct: 359 DAKKYKRMLANRASAARSKENREKKIRDMELRVETLENTQASLFGTMTLLEKENIVMMNE 418
Query: 380 NNELKIRLQAMEQQAQLRDAL-------------------------------NEALTAEV 408
N KIRLQ +EQQA L AL +E L AE+
Sbjct: 419 NKLAKIRLQLLEQQAPLLTALTKQLDELRRLEKEANERGSVDYSQLLKQLKQSEELLAEI 478
Query: 409 QRLKLATGE 417
R K+ATG+
Sbjct: 479 NRFKVATGQ 487
>AT1G58110.1 | chr1:21515919-21517374 REVERSE LENGTH=375
Length = 374
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%)
Query: 329 ANRQSAARSKERKMRYIQELEHKVQVLQTEATTLSAQLTMLQRDSTGLATQNNELKIRLQ 388
A +Q A RS+ RK++YI ELE VQ LQ E + +SA+L L + + L+ +N LK RL+
Sbjct: 238 AKQQFAQRSRVRKLQYISELERNVQTLQAEGSKVSAELDFLNQRNLILSMENKALKKRLE 297
Query: 389 AMEQQAQLRDALNEALTAEVQRLK 412
++ Q+ ++ E L E+ RL+
Sbjct: 298 SIAQEKLIKQLEQEVLEKEIGRLR 321
>AT5G04840.1 | chr5:1406005-1407648 FORWARD LENGTH=308
Length = 307
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 50/90 (55%)
Query: 329 ANRQSAARSKERKMRYIQELEHKVQVLQTEATTLSAQLTMLQRDSTGLATQNNELKIRLQ 388
A R RS+ RK++YI ELE V +LQT LS ++ L + L+ +N++LK ++
Sbjct: 177 AKRNPGQRSRVRKLQYIAELERTVGMLQTVEADLSVRVASLLQTRATLSLENSQLKQQMA 236
Query: 389 AMEQQAQLRDALNEALTAEVQRLKLATGEI 418
++Q +R+ + L E QRLK G +
Sbjct: 237 ILKQDKLIREGEYQLLKKEAQRLKSGLGYL 266
>AT5G07160.1 | chr5:2219971-2220709 REVERSE LENGTH=151
Length = 150
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%)
Query: 319 TDPKRVKRILANRQSAARSKERKMRYIQELEHKVQVLQTEATTLSAQLTMLQRDSTGLAT 378
TDPK +KRI++NR +A +S+ +K++Y+ L + LQ E + L +QL + L
Sbjct: 47 TDPKILKRIISNRVAAQKSRWKKVQYLDALVKRSMELQREVSELRSQLAITSEQKRYLEN 106
Query: 379 QNNELKIRLQAMEQQAQLRDALNEALTAEVQRLK 412
+ +LK + A Q D + E E++RLK
Sbjct: 107 EQRQLKECISARVQHCINSDGVIEEYKTEIERLK 140
>AT1G35490.1 | chr1:13061856-13063166 FORWARD LENGTH=301
Length = 300
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 319 TDPKRVKRILANRQSAARSKERKMRYIQELEHKVQVLQTEATTLSAQLTMLQRDSTGLAT 378
TD KR+K Q+A R++ R++ YI +LE +QVLQ E +S+ + L + L+
Sbjct: 170 TDSKRIKH-----QNAHRARLRRLEYISDLERTIQVLQVEGCEMSSAIHYLDQQLLMLSM 224
Query: 379 QNNELKIRLQAMEQQAQLRDALNEALTAEVQRLKL 413
+N LK R+ ++ + +L+ + L E+ L+
Sbjct: 225 ENRALKQRMDSLAEIQKLKHVEQQLLEREIGNLQF 259
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.311 0.127 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,283,105
Number of extensions: 201386
Number of successful extensions: 1045
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 1040
Number of HSP's successfully gapped: 22
Length of query: 464
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 362
Effective length of database: 8,310,137
Effective search space: 3008269594
Effective search space used: 3008269594
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 113 (48.1 bits)