BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0141100 Os02g0141100|009-157-G12
(304 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0141100 Similar to Auxin response factor 7 (Non-photot... 631 0.0
Os06g0702600 Similar to Auxin response factor 7a (Fragment) 425 e-119
Os08g0520500 Similar to Auxin response factor 5 (Transcript... 348 2e-96
Os04g0664400 Similar to Auxin response factor 5 (Transcript... 140 1e-33
Os06g0677800 Similar to P-167-1_1 (Fragment) 138 5e-33
Os02g0164900 Similar to Auxin response factor 3 137 8e-33
Os12g0613700 Transcriptional factor B3 family protein 135 5e-32
Os04g0671900 Similar to P-167-1_1 (Fragment) 128 5e-30
AK100167 113 2e-25
Os01g0927600 Similar to Auxin response factor 2 (ARF1-bindi... 97 1e-20
Os02g0557200 Similar to Auxin response factor 1 89 4e-18
Os12g0479400 Similar to Auxin response factor 1 84 1e-16
Os11g0523800 Transcriptional factor B3 family protein 83 3e-16
Os04g0442000 Similar to Auxin response factor 2 (ARF1-bindi... 80 2e-15
>Os02g0141100 Similar to Auxin response factor 7 (Non-phototropic hypocotyl 4)
(BIPOSTO protein) (Auxin-responsive protein
IAA21/IAA23/IAA25)
Length = 304
Score = 631 bits (1628), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/304 (100%), Positives = 304/304 (100%)
Query: 1 VNSKLPNVAPGPQNCINHALQTDNLETSSSATSLCPSRTDGLVHQGFPSSNFNQHQMFKD 60
VNSKLPNVAPGPQNCINHALQTDNLETSSSATSLCPSRTDGLVHQGFPSSNFNQHQMFKD
Sbjct: 1 VNSKLPNVAPGPQNCINHALQTDNLETSSSATSLCPSRTDGLVHQGFPSSNFNQHQMFKD 60
Query: 61 ALPDVEMEGVDPSNSGLFGINNDNLLGFPIETEDLLINALDSVKYQNHISTDVENNYPMQ 120
ALPDVEMEGVDPSNSGLFGINNDNLLGFPIETEDLLINALDSVKYQNHISTDVENNYPMQ
Sbjct: 61 ALPDVEMEGVDPSNSGLFGINNDNLLGFPIETEDLLINALDSVKYQNHISTDVENNYPMQ 120
Query: 121 KDALQEISTSMVSQSFGQSDMAFNSIDSAINDGAFLNKNSWPAAPLLQRMRTFTKVYKRG 180
KDALQEISTSMVSQSFGQSDMAFNSIDSAINDGAFLNKNSWPAAPLLQRMRTFTKVYKRG
Sbjct: 121 KDALQEISTSMVSQSFGQSDMAFNSIDSAINDGAFLNKNSWPAAPLLQRMRTFTKVYKRG 180
Query: 181 AVGRSIDIGRYSGYEELKHALARMFGIEGQLEDRQRIGWKLVYKDHEDDILLLGDDPWEE 240
AVGRSIDIGRYSGYEELKHALARMFGIEGQLEDRQRIGWKLVYKDHEDDILLLGDDPWEE
Sbjct: 181 AVGRSIDIGRYSGYEELKHALARMFGIEGQLEDRQRIGWKLVYKDHEDDILLLGDDPWEE 240
Query: 241 FVNCVRCIRILSPQEVQQMSLDGDLGSNVLPNQACSSSDGVNGWRPRCDQNPGNPSIGPY 300
FVNCVRCIRILSPQEVQQMSLDGDLGSNVLPNQACSSSDGVNGWRPRCDQNPGNPSIGPY
Sbjct: 241 FVNCVRCIRILSPQEVQQMSLDGDLGSNVLPNQACSSSDGVNGWRPRCDQNPGNPSIGPY 300
Query: 301 DQFE 304
DQFE
Sbjct: 301 DQFE 304
>Os06g0702600 Similar to Auxin response factor 7a (Fragment)
Length = 991
Score = 425 bits (1092), Expect = e-119, Method: Compositional matrix adjust.
Identities = 203/273 (74%), Positives = 231/273 (84%), Gaps = 3/273 (1%)
Query: 35 CPSRTDGLVHQGFPSSNFNQHQMFKDALPDVEMEGVDPSNSGLFGINNDNLLGFPIE--T 92
PS+ DGL+HQ FP SNFNQ QMFKDA PD E+ + SN+ LFGIN D LGFPI T
Sbjct: 719 VPSQNDGLLHQNFPMSNFNQPQMFKDAPPDAEIHAANTSNNALFGINGDGPLGFPIGLGT 778
Query: 93 EDLLINALDSVKYQNHISTDVENNYPMQKDALQEISTSMVSQSFGQSDMAFNSIDSAIND 152
+D L N +D+ KY+NHIST+++N+Y + KDA QEIS+SMVSQSFG SDMAFNSIDS IND
Sbjct: 779 DDFLSNGIDAAKYENHISTEIDNSYRIPKDAQQEISSSMVSQSFGASDMAFNSIDSTIND 838
Query: 153 GAFLNKNSWPAAPLLQRMRTFTKVYKRGAVGRSIDIGRYSGYEELKHALARMFGIEGQLE 212
G FLN++SWP A L+RMRTFTKVYKRGAVGRSID+ ++SGY+ELKHALARMF IEGQLE
Sbjct: 839 GGFLNRSSWPPAAPLKRMRTFTKVYKRGAVGRSIDMSQFSGYDELKHALARMFSIEGQLE 898
Query: 213 DRQRIGWKLVYKDHEDDILLLGDDPWEEFVNCVRCIRILSPQEVQQMSLDG-DLGSNVLP 271
+RQRIGWKLVYKDHEDDILLLGDDPWEEFV CV+CIRILSPQEVQQMSL+G DLG+N+ P
Sbjct: 899 ERQRIGWKLVYKDHEDDILLLGDDPWEEFVGCVKCIRILSPQEVQQMSLEGCDLGNNIPP 958
Query: 272 NQACSSSDGVNGWRPRCDQNPGNPSIGPYDQFE 304
NQACSSSDG N WR RCDQN GNPS G Y+QFE
Sbjct: 959 NQACSSSDGGNAWRARCDQNSGNPSNGSYEQFE 991
>Os08g0520500 Similar to Auxin response factor 5 (Transcription factor MONOPTEROS)
(Auxin- responsive protein IAA24)
Length = 1096
Score = 348 bits (894), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 172/274 (62%), Positives = 210/274 (76%), Gaps = 2/274 (0%)
Query: 13 QNCINHALQTDNLETSSSATSLCPSRTDGLVHQGFPSSNFNQHQMFKDALPDVEMEGVDP 72
Q+CIN+ Q D L+TSSSATS+C S+ DG + Q FP S+F+QH + KD +PD E E DP
Sbjct: 820 QDCINNNPQMDYLDTSSSATSVCLSQADGSLQQNFPPSSFHQHHLLKDTVPDSEFEVTDP 879
Query: 73 SNSGLFGINNDNLLGFPIETEDLLINALDSVKYQNHISTDVENNYPMQKDALQEISTSMV 132
N+ LFG+N D LG P+ DLL N + + KY + + + +N+ KD+ QE+S+SM+
Sbjct: 880 RNNLLFGVNIDGQLGLPLNA-DLLANDIGTDKYMDQLPGNGISNFISSKDSQQELSSSMI 938
Query: 133 SQSFGQSDMAFNSIDSAINDGAFLNKNSWPAA-PLLQRMRTFTKVYKRGAVGRSIDIGRY 191
S SFG +DMAFNSIDSAIND FLN+NS AA P QRMRT+TKV+KRGAVGRSIDI RY
Sbjct: 939 SHSFGVADMAFNSIDSAINDTPFLNRNSRSAAGPAHQRMRTYTKVHKRGAVGRSIDINRY 998
Query: 192 SGYEELKHALARMFGIEGQLEDRQRIGWKLVYKDHEDDILLLGDDPWEEFVNCVRCIRIL 251
SGY+ELKH +ARMFGIEGQL D+ R+GWKLVY+DHE D+LL+GDDPWE+FV CVRCIRIL
Sbjct: 999 SGYDELKHDVARMFGIEGQLGDQNRVGWKLVYEDHEKDVLLVGDDPWEDFVKCVRCIRIL 1058
Query: 252 SPQEVQQMSLDGDLGSNVLPNQACSSSDGVNGWR 285
SPQE QM L GD G + LPNQACSSSDG + WR
Sbjct: 1059 SPQEEMQMRLVGDFGDSFLPNQACSSSDGGHPWR 1092
>Os04g0664400 Similar to Auxin response factor 5 (Transcription factor
MONOPTEROS) (Auxin- responsive protein IAA24)
Length = 955
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 62/101 (61%), Positives = 80/101 (79%)
Query: 163 AAPLLQRMRTFTKVYKRGAVGRSIDIGRYSGYEELKHALARMFGIEGQLEDRQRIGWKLV 222
A P+ +RT+TKV K+G+VGRSID+ + Y EL+ A+A MFG++G+LE WKLV
Sbjct: 844 AKPMKPPVRTYTKVQKQGSVGRSIDVTGFRNYHELRSAIACMFGLQGKLEHPGSSEWKLV 903
Query: 223 YKDHEDDILLLGDDPWEEFVNCVRCIRILSPQEVQQMSLDG 263
Y D+E+D+LL+GDDPWEEF+NCVRCIRILSP EVQQMS +G
Sbjct: 904 YVDYENDVLLVGDDPWEEFINCVRCIRILSPSEVQQMSENG 944
>Os06g0677800 Similar to P-167-1_1 (Fragment)
Length = 917
Score = 138 bits (347), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 64/108 (59%), Positives = 79/108 (73%)
Query: 172 TFTKVYKRGAVGRSIDIGRYSGYEELKHALARMFGIEGQLEDRQRIGWKLVYKDHEDDIL 231
TF KVYK G GRS+DI R+S Y EL+ L R+FG+EGQLE+ R GW+LV+ D EDD+L
Sbjct: 787 TFVKVYKSGTYGRSLDITRFSSYHELRRELGRLFGLEGQLENPLRSGWQLVFVDREDDVL 846
Query: 232 LLGDDPWEEFVNCVRCIRILSPQEVQQMSLDGDLGSNVLPNQACSSSD 279
L+GDDPW+EFVN V CI+ILSPQEVQQM +L S+ + SS D
Sbjct: 847 LVGDDPWQEFVNSVSCIKILSPQEVQQMGKPFELLSSAPGKRLGSSCD 894
>Os02g0164900 Similar to Auxin response factor 3
Length = 908
Score = 137 bits (346), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 60/92 (65%), Positives = 72/92 (78%)
Query: 172 TFTKVYKRGAVGRSIDIGRYSGYEELKHALARMFGIEGQLEDRQRIGWKLVYKDHEDDIL 231
TF KVYK G VGR +DI R+S Y EL+ + R+FG+EGQLED R GW+LV+ D EDD+L
Sbjct: 778 TFVKVYKSGTVGRLLDITRFSSYHELRSEVGRLFGLEGQLEDPLRSGWQLVFVDREDDVL 837
Query: 232 LLGDDPWEEFVNCVRCIRILSPQEVQQMSLDG 263
L+GDDPW+EFVN V CI+ILSPQEVQQM G
Sbjct: 838 LVGDDPWQEFVNSVSCIKILSPQEVQQMGKPG 869
>Os12g0613700 Transcriptional factor B3 family protein
Length = 899
Score = 135 bits (339), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 60/93 (64%), Positives = 74/93 (79%)
Query: 172 TFTKVYKRGAVGRSIDIGRYSGYEELKHALARMFGIEGQLEDRQRIGWKLVYKDHEDDIL 231
TF KVYK G++GRS+DI R+S Y EL+ L R+FG+EGQLED R GW+LV+ D E+DIL
Sbjct: 767 TFVKVYKSGSLGRSLDISRFSSYCELRSELERLFGLEGQLEDPVRSGWQLVFVDRENDIL 826
Query: 232 LLGDDPWEEFVNCVRCIRILSPQEVQQMSLDGD 264
L+GDDPW+EF N V CI+ILSPQEVQQ+ GD
Sbjct: 827 LVGDDPWQEFANSVWCIKILSPQEVQQLVRGGD 859
>Os04g0671900 Similar to P-167-1_1 (Fragment)
Length = 818
Score = 128 bits (322), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 57/94 (60%), Positives = 73/94 (77%)
Query: 171 RTFTKVYKRGAVGRSIDIGRYSGYEELKHALARMFGIEGQLEDRQRIGWKLVYKDHEDDI 230
RTF KVYK G+VGRS+DI R+S Y EL+ L +MFGI+GQL+D R GW+LV+ D E+D+
Sbjct: 719 RTFVKVYKSGSVGRSLDITRFSNYAELREELGQMFGIKGQLDDPDRSGWQLVFVDRENDV 778
Query: 231 LLLGDDPWEEFVNCVRCIRILSPQEVQQMSLDGD 264
LLLGDDPWE FVN V I+ILSP++V +M G+
Sbjct: 779 LLLGDDPWESFVNSVWYIKILSPEDVHKMGKQGN 812
>AK100167
Length = 571
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 49/75 (65%), Positives = 60/75 (80%)
Query: 171 RTFTKVYKRGAVGRSIDIGRYSGYEELKHALARMFGIEGQLEDRQRIGWKLVYKDHEDDI 230
RTF KVYK G+VGRS+DI R+S Y EL+ L +MFGI+GQL+D R GW+LV+ D E+D+
Sbjct: 496 RTFVKVYKSGSVGRSLDITRFSNYAELREELGQMFGIKGQLDDPDRSGWQLVFVDRENDV 555
Query: 231 LLLGDDPWEEFVNCV 245
LLLGDDPWE FVN V
Sbjct: 556 LLLGDDPWESFVNSV 570
>Os01g0927600 Similar to Auxin response factor 2 (ARF1-binding protein) (ARF1-BP)
Length = 808
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 97/182 (53%), Gaps = 16/182 (8%)
Query: 84 NLLGFPIETEDLLINALDSVKYQNH-----ISTDVENNYPMQKDALQEISTSMVSQSFGQ 138
+ GF ++T + N L S H + + P+Q D + E+S S G
Sbjct: 609 KIFGFKVDTTNAPNNHLSSPMAATHEPMLQTPSSLNQLQPVQTDCIPEVSVSTA----GT 664
Query: 139 SDMAFNSIDSAINDGAFLNKNSWPAAPLLQRMRTFTKVYKRG-AVGRSIDIGRYSGYEEL 197
+ S A + + A+ R+ TKV+K+G A+GRS+D+ ++S Y+EL
Sbjct: 665 ATENEKSGQQAQQSSKDVQSKTQVAS-----TRSCTKVHKQGVALGRSVDLSKFSNYDEL 719
Query: 198 KHALARMFGIEGQLEDRQRIGWKLVYKDHEDDILLLGDDPWEEFVNCVRCIRILSPQEVQ 257
K L +MF +G+L + W++VY D+E D++L+GDDPWEEF + VR I I + +EVQ
Sbjct: 720 KAELDKMFEFDGELVSSNK-NWQIVYTDNEGDMMLVGDDPWEEFCSIVRKIYIYTKEEVQ 778
Query: 258 QM 259
+M
Sbjct: 779 KM 780
>Os02g0557200 Similar to Auxin response factor 1
Length = 678
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 71/109 (65%), Gaps = 5/109 (4%)
Query: 168 QRMRTFTKVYKRG-AVGRSIDIGRYSGYEELKHALARMFGIEGQLEDRQRIGWKLVYKDH 226
+++R+ TKV +G AVGR++D+ R GY++L+ L MF I+G+L + WK+VY D
Sbjct: 545 RQVRSCTKVIMQGMAVGRAVDLTRLHGYDDLRCKLEEMFDIQGELSASLK-KWKVVYTDD 603
Query: 227 EDDILLLGDDPWEEFVNCVRCIRILSPQEVQQMSLDGDL---GSNVLPN 272
EDD++L+GDDPW EF + V+ I I + +E +Q++ L G + PN
Sbjct: 604 EDDMMLVGDDPWPEFCSMVKRIYIYTYEEAKQLTPKSKLPIIGDAIKPN 652
>Os12g0479400 Similar to Auxin response factor 1
Length = 840
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 94/173 (54%), Gaps = 17/173 (9%)
Query: 119 MQKDALQEISTSMVSQSFGQSDMAFNSIDSAINDGAFLNKNSWP-AAPLLQRM------R 171
+Q+DAL+E S S++ +D A +D A S P +Q R
Sbjct: 660 LQQDALEEDECSDPSKTV-------KPLDGAQHDSAREKHQSCPDGTKNIQSKQQNGSSR 712
Query: 172 TFTKVYKRG-AVGRSIDIGRYSGYEELKHALARMFGIEGQLEDRQRIGWKLVYKDHEDDI 230
+ KV+K+G A+GRSID+ +++ Y+EL L +MF G+L + W +VY D+E D+
Sbjct: 713 SCKKVHKQGIALGRSIDLTKFTCYDELIAELDQMFDFNGELNSSSK-NWMVVYTDNEGDM 771
Query: 231 LLLGDDPWEEFVNCVRCIRILSPQEVQQMSLDGDLGSNVLPNQACSSSDGVNG 283
+L+GDDPW EF N V I I + +EVQ+M+ G L S +++ S G+ G
Sbjct: 772 MLVGDDPWNEFCNMVHKIFIYTREEVQKMN-PGALNSRSEDSRSTSVERGLVG 823
>Os11g0523800 Transcriptional factor B3 family protein
Length = 852
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 72/114 (63%), Gaps = 3/114 (2%)
Query: 171 RTFTKVYKRG-AVGRSIDIGRYSGYEELKHALARMFGIEGQLEDRQRIGWKLVYKDHEDD 229
R+ KV+K+G A+GRS+D+ +++GYEEL L MF G+L+ ++ W +VY D+E D
Sbjct: 724 RSCKKVHKQGIALGRSVDLTKFNGYEELIAELDDMFDFNGELKGPKK-EWMVVYTDNEGD 782
Query: 230 ILLLGDDPWEEFVNCVRCIRILSPQEVQQMSLDGDLGSNVLPNQACSSSDGVNG 283
++L+GDDPW EF + V I I + +EVQ+M+ G L S + A S G G
Sbjct: 783 MMLVGDDPWIEFCDMVHKIFIYTREEVQRMN-PGTLNSRSEDSHANSMERGSVG 835
>Os04g0442000 Similar to Auxin response factor 2 (ARF1-binding protein) (ARF1-BP)
Length = 673
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 66/99 (66%), Gaps = 2/99 (2%)
Query: 168 QRMRTFTKVYKRG-AVGRSIDIGRYSGYEELKHALARMFGIEGQLEDRQRIGWKLVYKDH 226
+++R+ TKV +G AVGR++D+ + +GY +L+ L MF I+G L + W++VY D
Sbjct: 544 RQVRSCTKVIMQGMAVGRAVDLTKLNGYGDLRSKLEEMFDIQGDLCPTLK-RWQVVYTDD 602
Query: 227 EDDILLLGDDPWEEFVNCVRCIRILSPQEVQQMSLDGDL 265
EDD++L+GDDPW+EF + V+ I I S +E + ++ L
Sbjct: 603 EDDMMLVGDDPWDEFCSMVKRIYIYSYEEAKLLAPKSKL 641
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.134 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,054,212
Number of extensions: 473502
Number of successful extensions: 998
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 995
Number of HSP's successfully gapped: 14
Length of query: 304
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 204
Effective length of database: 11,814,401
Effective search space: 2410137804
Effective search space used: 2410137804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 156 (64.7 bits)