Os02g0141100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Auxin response factor 7 (Non-phototropic hypocotyl 4) (BIPOSTO protein) (Auxin-responsive protein IAA21/IAA23/IAA25).
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Os02g0141100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Auxin response factor 7 (Non-phototropic hypocotyl 4) (BIPOSTO protein) (Auxin-responsive protein IAA21/IAA23/IAA25).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 132.41 | 0.541 | 6.8 | 1.53 | 0.407 | -1.97 | 1.04 | 5.29 | 0.455 | 20.1 | 21.1 | 1476 | -- | -- |
| 141.66 | 0.554 | 6.91 | 0.64 | 0.386 | -2.48 | 1.09 | -- | 0.305 | 18.9 | 14.07 | 7439 | -- | -- |
| 134.94 | 0.541 | 6.8 | 1.54 | 0.491 | -2.03 | -- | 5.59 | 0.47 | 19.1 | 21.32 | 1616 | -- | -- |
| 142.59 | 0.556 | 6.93 | 0.558 | 0.414 | -2.54 | -- | -- | 0.298 | 19.4 | 9.495 | 7441 | -- | -- |
| 144.61 | 0.56 | 6.78 | 1.61 | -- | -1.99 | -- | 5.62 | 0.481 | -- | 21.31 | 1439 | -- | -- |
| 245.6 | 0.735 | 7.08 | -0.715 | 0.408 | -- | 1.06 | -- | -0.393 | 19.6 | -- | -- | -- | -- |
| 248.3 | 0.738 | 7.08 | -0.737 | 0.424 | -- | -- | -- | -0.389 | 18.8 | -- | -- | -- | -- |
| 150.96 | 0.572 | 6.92 | 0.531 | -- | -2.5 | -- | -- | 0.271 | -- | 9.84 | 7232 | -- | -- |
| 148.1 | 0.567 | 6.96 | -- | 0.396 | -2.2 | -- | -- | 0.157 | 19.5 | 10.1 | 7294 | -- | -- |
| 257.71 | 0.75 | 7.07 | -0.747 | -- | -- | -- | -- | -0.398 | -- | -- | -- | -- | -- |
| 262.62 | 0.758 | 7.06 | -- | 0.433 | -- | -- | -- | -0.307 | 18.7 | -- | -- | -- | -- |
| 156.25 | 0.582 | 6.95 | -- | -- | -2.2 | -- | -- | 0.147 | -- | 9.256 | 7204 | -- | -- |
| 272.41 | 0.77 | 7.05 | -- | -- | -- | -- | -- | -0.315 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 123.87 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 2 | 123.92 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 18 |
| 12 | 125.04 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 13 | 125.05 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 20 |
| 14 | 125.08 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 20 |
| 15 | 125.09 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 29 | 125.22 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 15 |
| 31 | 125.25 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 18 |
| 45 | 125.31 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 18 |
| 51 | 125.36 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 54 | 125.47 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 10 |
| 55 | 125.50 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 8 |
| 58 | 125.53 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 9 |
| 62 | 125.55 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 64 | 125.55 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 7 |
| 71 | 125.58 | radiation | 1 | 14400 | < th | dose dependent | sin | 10 | NA |
| 92 | 125.85 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 96 | 125.90 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 137 | 126.34 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 11 |
| 163 | 126.49 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 5 |
| 192 | 126.64 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 23 |
| 195 | 126.65 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 21 |
| 209 | 126.71 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 14 |
| 220 | 126.75 | radiation | 1 | 43200 | < th | dose independent | sin | 13 | NA |
| 225 | 126.76 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 22 |
| 229 | 126.77 | radiation | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 234 | 126.77 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 23 |
| 244 | 126.78 | radiation | 1 | 14400 | < th | dose dependent | rect. | 1 | 23 |
| 283 | 126.83 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 7 |
| 285 | 126.83 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 16 |
| 306 | 126.86 | radiation | 1 | 14400 | < th | dose dependent | rect. | 10 | 23 |
| 307 | 126.87 | humidity | 80 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 334 | 126.97 | radiation | 1 | 43200 | > th | dose independent | sin | 13 | NA |
| 364 | 127.00 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 15 |
| 425 | 127.13 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 9 |
| 484 | 127.25 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 22 |
| 488 | 127.27 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 12 |
| 490 | 127.27 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 18 |
| 534 | 127.36 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 22 |
| 538 | 127.37 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 12 |
| 567 | 127.46 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 9 |
| 598 | 127.55 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 9 |
| 600 | 127.56 | humidity | 80 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 755 | 127.85 | radiation | 1 | 43200 | < th | dose independent | rect. | 1 | 18 |
| 762 | 127.85 | radiation | 1 | 43200 | < th | dose independent | rect. | 3 | 23 |
| 768 | 127.86 | radiation | 1 | 43200 | < th | dose independent | no | NA | NA |
| 810 | 127.88 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 858 | 128.01 | radiation | 1 | 43200 | > th | dose independent | no | NA | NA |
| 921 | 128.05 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 941 | 128.08 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 7 |
| 948 | 128.09 | humidity | 80 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 956 | 128.10 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 4 |