Os12g0479400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Auxin response factor 1.
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Os12g0479400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Auxin response factor 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.74 | 0.247 | 12.6 | 1.11 | 1.23 | 0.403 | 0.383 | -0.332 | 0.402 | 5.84 | 20 | 295 | -- | -- |
| 28.05 | 0.247 | 12.6 | 1.09 | 1.22 | 0.463 | 0.267 | -- | 0.392 | 5.84 | 19.9 | 304 | -- | -- |
| 28.07 | 0.247 | 12.6 | 1.1 | 1.23 | 0.416 | -- | -0.232 | 0.397 | 5.85 | 19.91 | 294 | -- | -- |
| 28.21 | 0.247 | 12.6 | 1.07 | 1.22 | 0.455 | -- | -- | 0.393 | 5.86 | 19.98 | 290 | -- | -- |
| 71.54 | 0.394 | 12.6 | 1.04 | -- | 0.81 | -- | 0.204 | 0.557 | -- | 25.71 | 335 | -- | -- |
| 33.8 | 0.273 | 12.6 | 0.918 | 1.27 | -- | 0.329 | -- | 0.314 | 5.75 | -- | -- | -- | -- |
| 34.07 | 0.273 | 12.6 | 0.92 | 1.28 | -- | -- | -- | 0.312 | 5.76 | -- | -- | -- | -- |
| 71.07 | 0.393 | 12.6 | 1.15 | -- | 0.819 | -- | -- | 0.608 | -- | 25.7 | 334 | -- | -- |
| 55.59 | 0.349 | 12.6 | -- | 1.28 | 0.134 | -- | -- | 0.232 | 5.82 | 20.5 | 357 | -- | -- |
| 118.46 | 0.509 | 12.6 | 0.96 | -- | -- | -- | -- | 0.343 | -- | -- | -- | -- | -- |
| 56.39 | 0.351 | 12.6 | -- | 1.29 | -- | -- | -- | 0.21 | 5.73 | -- | -- | -- | -- |
| 106.47 | 0.481 | 12.6 | -- | -- | 0.712 | -- | -- | 0.462 | -- | 25.76 | 326 | -- | -- |
| 142.77 | 0.558 | 12.7 | -- | -- | -- | -- | -- | 0.236 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.96 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 20 |
| 3 | 24.23 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 16 |
| 7 | 24.65 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 14 |
| 9 | 24.81 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 16 |
| 11 | 24.90 | temperature | 10 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 21 | 25.24 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 8 | 20 |
| 53 | 25.75 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 56 | 25.83 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 58 | 25.85 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 59 | 25.85 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 63 | 25.91 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 5 |
| 68 | 25.95 | temperature | 10 | 90 | > th | dose dependent | rect. | 6 | 22 |
| 72 | 25.97 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 1 | 20 |
| 76 | 25.99 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 3 | 18 |
| 81 | 26.04 | temperature | 10 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 83 | 26.06 | temperature | 10 | 10 | > th | dose dependent | rect. | 8 | 20 |
| 87 | 26.08 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 3 | 20 |
| 95 | 26.13 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 8 |
| 97 | 26.13 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 102 | 26.19 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 13 |
| 115 | 26.28 | temperature | 10 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 129 | 26.34 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 144 | 26.40 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 4 | 19 |
| 156 | 26.48 | temperature | 15 | 90 | > th | dose dependent | sin | 5 | NA |
| 167 | 26.52 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 5 |
| 169 | 26.52 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 203 | 26.62 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 8 |
| 207 | 26.63 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 17 |
| 213 | 26.65 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 10 |
| 217 | 26.66 | temperature | 30 | 90 | < th | dose dependent | sin | 5 | NA |
| 218 | 26.66 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 228 | 26.68 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 276 | 26.84 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 1 |
| 292 | 26.87 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 305 | 26.91 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 14 |
| 311 | 26.92 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 9 |
| 316 | 26.93 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 12 |
| 338 | 26.99 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 15 |
| 349 | 27.01 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 360 | 27.03 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 392 | 27.10 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 409 | 27.13 | temperature | 20 | 270 | < th | dose independent | rect. | 22 | 21 |
| 433 | 27.19 | temperature | 20 | 270 | < th | dose independent | rect. | 22 | 19 |
| 451 | 27.22 | temperature | 20 | 270 | < th | dose independent | sin | 7 | NA |
| 480 | 27.27 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 3 |
| 501 | 27.31 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 5 |
| 515 | 27.33 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 5 |
| 579 | 27.41 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 5 |
| 584 | 27.42 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 601 | 27.45 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 6 |
| 635 | 27.51 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 1 |
| 643 | 27.52 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 11 | 10 |
| 668 | 27.56 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 8 |
| 680 | 27.58 | temperature | 20 | 270 | > th | dose independent | sin | 8 | NA |
| 733 | 27.66 | temperature | 20 | 270 | < th | dose independent | rect. | 22 | 13 |
| 747 | 27.68 | radiation | 1 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 765 | 27.72 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 2 |
| 767 | 27.72 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 11 | 16 |
| 780 | 27.74 | temperature | 10 | 90 | > th | dose dependent | rect. | 21 | 7 |
| 803 | 27.78 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 8 |
| 813 | 27.79 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 2 | 19 |
| 821 | 27.80 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 831 | 27.81 | temperature | 20 | 270 | < th | dose independent | rect. | 13 | 23 |
| 838 | 27.82 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 849 | 27.84 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 4 | 19 |
| 878 | 27.87 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 4 | 17 |
| 879 | 27.87 | temperature | 20 | 270 | < th | dose independent | rect. | 10 | 23 |
| 901 | 27.89 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 13 | 8 |
| 939 | 27.94 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 956 | 27.96 | humidity | 50 | 14400 | > th | dose independent | rect. | 4 | 5 |
| 959 | 27.96 | temperature | 20 | 270 | < th | dose independent | rect. | 8 | 23 |