Os02g0164900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Auxin response factor 3.
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Os02g0164900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Auxin response factor 3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.61 | 0.28 | 10.4 | 1.63 | 1.05 | -1.52 | -1.02 | -3.45 | 0.326 | 3.63 | 1.171 | 14180 | -- | -- |
| 47.78 | 0.322 | 10.5 | 1.3 | 1.23 | -0.914 | -0.597 | -- | 0.253 | 3.81 | 4.336 | 10926 | -- | -- |
| 35.93 | 0.279 | 10.4 | 1.55 | 1.25 | -1.63 | -- | -3.52 | 0.344 | 3.73 | 0.9145 | 15209 | -- | -- |
| 45.49 | 0.314 | 10.5 | 1.04 | 1.33 | -1.09 | -- | -- | 0.19 | 3.4 | 3.368 | 15075 | -- | -- |
| 99.01 | 0.463 | 10.4 | 1.55 | -- | -1.52 | -- | -3.18 | 0.328 | -- | 1.033 | 18564 | -- | -- |
| 62.58 | 0.371 | 10.4 | 1.34 | 1.11 | -- | -0.67 | -- | 0.437 | 3.06 | -- | -- | -- | -- |
| 64.03 | 0.375 | 10.4 | 1.36 | 1.11 | -- | -- | -- | 0.441 | 2.96 | -- | -- | -- | -- |
| 104.68 | 0.477 | 10.5 | 0.905 | -- | -1.13 | -- | -- | 0.0566 | -- | 3.139 | 17113 | -- | -- |
| 37.62 | 0.286 | 10.5 | -- | 1.11 | -1.36 | -- | -- | -0.0493 | 3.21 | 6.65e-07 | 47520 | -- | -- |
| 134.25 | 0.541 | 10.4 | 1.41 | -- | -- | -- | -- | 0.469 | -- | -- | -- | -- | -- |
| 112.68 | 0.497 | 10.4 | -- | 1.13 | -- | -- | -- | 0.289 | 2.97 | -- | -- | -- | -- |
| 103.46 | 0.474 | 10.5 | -- | -- | -1.4 | -- | -- | -0.127 | -- | 0.7201 | 47520 | -- | -- |
| 186.38 | 0.637 | 10.4 | -- | -- | -- | -- | -- | 0.313 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.08 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 20 |
| 5 | 34.15 | radiation | 1 | 43200 | < th | dose dependent | sin | 7 | NA |
| 9 | 34.17 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 9 |
| 28 | 34.18 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 5 |
| 132 | 34.43 | radiation | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 134 | 34.43 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 17 |
| 147 | 34.43 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 23 |
| 150 | 34.43 | radiation | 1 | 43200 | < th | dose dependent | rect. | 13 | 23 |
| 157 | 34.44 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 15 |
| 184 | 34.44 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 23 |
| 192 | 34.45 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 23 |
| 298 | 34.72 | temperature | 20 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 312 | 34.75 | humidity | 90 | 43200 | > th | dose dependent | rect. | 23 | 18 |
| 336 | 34.81 | humidity | 90 | 43200 | > th | dose dependent | rect. | 23 | 9 |
| 352 | 34.84 | humidity | 90 | 43200 | > th | dose dependent | rect. | 24 | 1 |
| 398 | 34.90 | humidity | 90 | 43200 | > th | dose dependent | sin | 5 | NA |
| 423 | 34.92 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 21 |
| 453 | 34.98 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 20 |
| 456 | 34.98 | radiation | 1 | 43200 | < th | dose dependent | rect. | 13 | 13 |
| 468 | 34.99 | radiation | 1 | 43200 | < th | dose dependent | rect. | 13 | 6 |
| 547 | 35.05 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 9 |
| 554 | 35.05 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 18 |
| 563 | 35.06 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 568 | 35.06 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 7 |
| 679 | 35.15 | humidity | 90 | 43200 | > th | dose dependent | no | NA | NA |
| 712 | 35.18 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 756 | 35.20 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 23 |
| 789 | 35.25 | temperature | 20 | 43200 | < th | dose dependent | sin | 5 | NA |
| 833 | 35.31 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 853 | 35.33 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 12 |
| 856 | 35.33 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 18 |
| 893 | 35.37 | radiation | 1 | 43200 | > th | dose independent | rect. | 6 | 6 |
| 894 | 35.37 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 12 |
| 927 | 35.39 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 6 |
| 972 | 35.44 | radiation | 1 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 993 | 35.47 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 3 |