Os06g0677800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to P-167-1_1 (Fragment).
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Os06g0677800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to P-167-1_1 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.83 | 0.375 | 8.49 | -0.0095 | 1.24 | -1.25 | 0.112 | -1.21 | 0.498 | 6.9 | 22.9 | 1365 | -- | -- |
| 65.06 | 0.376 | 8.52 | -0.14 | 1.24 | -0.955 | 0.18 | -- | 0.457 | 6.97 | 24 | 1301 | -- | -- |
| 63.86 | 0.372 | 8.49 | -0.00798 | 1.24 | -1.25 | -- | -1.22 | 0.497 | 6.89 | 22.9 | 1365 | -- | -- |
| 65.08 | 0.376 | 8.52 | -0.142 | 1.24 | -0.962 | -- | -- | 0.457 | 6.92 | 23.91 | 1305 | -- | -- |
| 144.61 | 0.56 | 8.51 | 0.0189 | -- | -1.36 | -- | -1.39 | 0.523 | -- | 22.86 | 1399 | -- | -- |
| 76.66 | 0.41 | 8.48 | 0.134 | 1.26 | -- | 0.0338 | -- | 0.639 | 6.78 | -- | -- | -- | -- |
| 76.66 | 0.41 | 8.48 | 0.134 | 1.26 | -- | -- | -- | 0.639 | 6.78 | -- | -- | -- | -- |
| 145.62 | 0.562 | 8.54 | -0.143 | -- | -1.03 | -- | -- | 0.452 | -- | 25 | 1385 | -- | -- |
| 65.56 | 0.377 | 8.51 | -- | 1.24 | -0.881 | -- | -- | 0.483 | 6.92 | 23.99 | 1293 | -- | -- |
| 159.62 | 0.59 | 8.51 | 0.162 | -- | -- | -- | -- | 0.663 | -- | -- | -- | -- | -- |
| 77.13 | 0.411 | 8.48 | -- | 1.26 | -- | -- | -- | 0.624 | 6.77 | -- | -- | -- | -- |
| 146.05 | 0.563 | 8.55 | -- | -- | -0.945 | -- | -- | 0.477 | -- | 25.07 | 1377 | -- | -- |
| 160.31 | 0.591 | 8.51 | -- | -- | -- | -- | -- | 0.645 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.68 | temperature | 15 | 30 | > th | dose dependent | rect. | 5 | 18 |
| 5 | 58.22 | temperature | 30 | 90 | < th | dose dependent | rect. | 10 | 17 |
| 15 | 59.23 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 19 |
| 54 | 60.50 | temperature | 25 | 90 | < th | dose independent | rect. | 10 | 17 |
| 67 | 60.76 | temperature | 25 | 10 | < th | dose independent | rect. | 10 | 17 |
| 114 | 61.72 | temperature | 10 | 90 | > th | dose dependent | rect. | 13 | 10 |
| 141 | 62.03 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 11 |
| 237 | 63.22 | temperature | 20 | 90 | > th | dose independent | rect. | 13 | 10 |
| 241 | 63.24 | temperature | 25 | 270 | < th | dose dependent | sin | 21 | NA |
| 249 | 63.30 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 12 |
| 257 | 63.37 | temperature | 20 | 1440 | < th | dose dependent | rect. | 23 | 4 |
| 273 | 63.46 | wind | 1 | 14400 | > th | dose independent | rect. | 20 | 7 |
| 280 | 63.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 10 |
| 296 | 63.57 | wind | 3 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 311 | 63.62 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 7 |
| 342 | 63.72 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 14 |
| 345 | 63.73 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 12 |
| 349 | 63.74 | radiation | 40 | 14400 | < th | dose dependent | rect. | 24 | 5 |
| 355 | 63.75 | temperature | 30 | 90 | < th | dose dependent | sin | 18 | NA |
| 357 | 63.75 | wind | 3 | 14400 | < th | dose dependent | rect. | 20 | 4 |
| 385 | 63.81 | wind | 1 | 14400 | < th | dose independent | rect. | 20 | 5 |
| 403 | 63.84 | wind | 1 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 419 | 63.86 | wind | 1 | 14400 | < th | dose independent | rect. | 20 | 7 |
| 454 | 63.94 | temperature | 25 | 270 | > th | dose independent | rect. | 11 | 10 |
| 458 | 63.95 | temperature | 25 | 1440 | < th | dose dependent | sin | 5 | NA |
| 551 | 64.13 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 671 | 64.33 | temperature | 20 | 30 | > th | dose independent | rect. | 5 | 18 |
| 710 | 64.38 | temperature | 10 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 721 | 64.40 | temperature | 25 | 90 | > th | dose independent | sin | 19 | NA |
| 739 | 64.42 | wind | 1 | 14400 | > th | dose dependent | rect. | 22 | 2 |
| 770 | 64.45 | wind | 1 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 796 | 64.48 | temperature | 25 | 90 | < th | dose independent | sin | 18 | NA |
| 852 | 64.54 | wind | 1 | 14400 | > th | dose independent | sin | 14 | NA |
| 861 | 64.54 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 19 |
| 926 | 64.62 | temperature | 25 | 10 | > th | dose independent | sin | 18 | NA |
| 927 | 64.62 | humidity | 70 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 989 | 64.68 | temperature | 25 | 270 | > th | dose independent | sin | 21 | NA |
| 999 | 64.69 | temperature | 25 | 10 | < th | dose independent | sin | 17 | NA |