Os08g0520500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Auxin response factor 5 (Transcription factor MONOPTEROS) (Auxin- responsive protein IAA24).
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Os08g0520500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Auxin response factor 5 (Transcription factor MONOPTEROS) (Auxin- responsive protein IAA24).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.1 | 0.211 | 9.42 | -0.013 | 0.423 | 0.514 | 0.0172 | 1.55 | 0.237 | 5.16 | 20.44 | 6065 | -- | -- |
| 21.58 | 0.216 | 9.48 | -0.171 | 0.412 | 0.274 | 0.0433 | -- | 0.186 | 5.1 | 25.29 | 3049 | -- | -- |
| 20.09 | 0.209 | 9.42 | -0.0141 | 0.424 | 0.515 | -- | 1.55 | 0.237 | 5.16 | 20.45 | 6099 | -- | -- |
| 21.52 | 0.216 | 9.48 | -0.188 | 0.424 | 0.277 | -- | -- | 0.185 | 5.33 | 24.7 | 3653 | -- | -- |
| 29.43 | 0.253 | 9.43 | 0.00152 | -- | 0.518 | -- | 1.53 | 0.244 | -- | 20.56 | 5840 | -- | -- |
| 23.5 | 0.227 | 9.47 | -0.093 | 0.426 | -- | -0.00406 | -- | 0.247 | 5.1 | -- | -- | -- | -- |
| 23.5 | 0.227 | 9.47 | -0.093 | 0.426 | -- | -- | -- | 0.247 | 5.1 | -- | -- | -- | -- |
| 29.52 | 0.253 | 9.5 | -0.209 | -- | 0.358 | -- | -- | 0.156 | -- | 24.7 | 2732 | -- | -- |
| 22.41 | 0.22 | 9.48 | -- | 0.413 | 0.219 | -- | -- | 0.214 | 5.22 | 25.21 | 3032 | -- | -- |
| 33.01 | 0.268 | 9.47 | -0.0778 | -- | -- | -- | -- | 0.258 | -- | -- | -- | -- | -- |
| 23.73 | 0.228 | 9.47 | -- | 0.424 | -- | -- | -- | 0.258 | 5.11 | -- | -- | -- | -- |
| 30.52 | 0.257 | 9.49 | -- | -- | 0.295 | -- | -- | 0.191 | -- | 24.7 | 2702 | -- | -- |
| 33.17 | 0.269 | 9.47 | -- | -- | -- | -- | -- | 0.267 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.92 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 16 |
| 2 | 18.98 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 18 |
| 6 | 19.10 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 10 |
| 10 | 19.17 | temperature | 20 | 270 | > th | dose dependent | sin | 9 | NA |
| 16 | 19.25 | temperature | 10 | 270 | > th | dose dependent | sin | 9 | NA |
| 17 | 19.26 | temperature | 30 | 270 | < th | dose dependent | sin | 9 | NA |
| 44 | 19.63 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 61 | 19.74 | temperature | 20 | 90 | > th | dose dependent | rect. | 20 | 9 |
| 74 | 19.79 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 75 | 19.80 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 83 | 19.82 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 12 |
| 87 | 19.83 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 5 |
| 127 | 19.89 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 132 | 19.89 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 5 |
| 280 | 19.97 | temperature | 25 | 270 | < th | dose dependent | rect. | 12 | 20 |
| 317 | 19.99 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 18 |
| 336 | 20.01 | temperature | 25 | 270 | > th | dose independent | rect. | 18 | 18 |
| 338 | 20.01 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 414 | 20.05 | temperature | 20 | 1440 | > th | dose dependent | sin | 12 | NA |
| 430 | 20.05 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 19 |
| 512 | 20.10 | temperature | 25 | 270 | < th | dose independent | rect. | 22 | 10 |
| 533 | 20.10 | temperature | 10 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 575 | 20.13 | temperature | 25 | 4320 | < th | dose dependent | sin | 14 | NA |
| 581 | 20.13 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 9 |
| 594 | 20.14 | temperature | 25 | 270 | < th | dose independent | sin | 9 | NA |
| 723 | 20.19 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 753 | 20.20 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 7 |
| 770 | 20.20 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 772 | 20.21 | wind | 5 | 4320 | < th | dose independent | rect. | 20 | 6 |
| 800 | 20.21 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 837 | 20.23 | temperature | 25 | 270 | > th | dose independent | sin | 9 | NA |
| 838 | 20.23 | wind | 1 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 839 | 20.23 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |