Os02g0557200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Auxin response factor 1.
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Os02g0557200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Auxin response factor 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.73 | 0.229 | 11.2 | 0.755 | 0.847 | -0.0916 | 0.0232 | 3.78 | 0.533 | 4.67 | 26.81 | 2624 | -- | -- |
| 25.77 | 0.236 | 11.3 | -0.139 | 0.871 | 0.324 | 0.0429 | -- | 0.393 | 4.69 | 28.71 | 5382 | -- | -- |
| 23.73 | 0.227 | 11.2 | 0.758 | 0.846 | -0.0943 | -- | 3.82 | 0.532 | 4.67 | 26.87 | 2622 | -- | -- |
| 25.36 | 0.235 | 11.3 | -0.143 | 0.861 | 0.353 | -- | -- | 0.429 | 4.73 | 29.9 | 2611 | -- | -- |
| 61.23 | 0.364 | 11.2 | 0.871 | -- | -0.0358 | -- | 4.18 | 0.578 | -- | 26.6 | 2686 | -- | -- |
| 30.28 | 0.258 | 11.3 | -0.0561 | 0.885 | -- | 0.134 | -- | 0.363 | 4.6 | -- | -- | -- | -- |
| 30.32 | 0.258 | 11.3 | -0.057 | 0.886 | -- | -- | -- | 0.362 | 4.6 | -- | -- | -- | -- |
| 63.69 | 0.373 | 11.3 | 0.0564 | -- | -0.587 | -- | -- | 0.432 | -- | 24.8 | 1254 | -- | -- |
| 25.91 | 0.237 | 11.3 | -- | 0.86 | 0.332 | -- | -- | 0.438 | 4.74 | 30.1 | 2597 | -- | -- |
| 72.15 | 0.397 | 11.3 | -0.0229 | -- | -- | -- | -- | 0.385 | -- | -- | -- | -- | -- |
| 30.41 | 0.258 | 11.3 | -- | 0.885 | -- | -- | -- | 0.368 | 4.6 | -- | -- | -- | -- |
| 63.59 | 0.373 | 11.3 | -- | -- | -0.581 | -- | -- | 0.432 | -- | 24.5 | 1254 | -- | -- |
| 72.16 | 0.396 | 11.3 | -- | -- | -- | -- | -- | 0.388 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.80 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 14 |
| 3 | 23.81 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 6 |
| 27 | 23.98 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 29 | 24.00 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 13 | NA |
| 63 | 24.13 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 162 | 24.42 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 166 | 24.43 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 196 | 24.47 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 197 | 24.47 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 199 | 24.47 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 215 | 24.49 | wind | 5.0 | 43200 | < th | dose independent | rect. | 19 | 10 |
| 220 | 24.50 | wind | 5.0 | 43200 | > th | dose independent | rect. | 19 | 10 |
| 228 | 24.51 | wind | 5.0 | 43200 | < th | dose independent | rect. | 20 | 8 |
| 257 | 24.56 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 332 | 24.62 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 339 | 24.63 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 341 | 24.63 | temperature | 25.0 | 1440 | > th | dose dependent | no | NA | NA |
| 357 | 24.64 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 5 | 21 |
| 359 | 24.64 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 3 | 22 |
| 364 | 24.64 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 379 | 24.65 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 6 | 19 |
| 412 | 24.67 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 415 | 24.67 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 17 | 15 |
| 467 | 24.69 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 488 | 24.71 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 490 | 24.71 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 514 | 24.72 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 577 | 24.75 | wind | 5.0 | 43200 | > th | dose independent | sin | 10 | NA |
| 579 | 24.75 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 601 | 24.76 | wind | 5.0 | 43200 | < th | dose independent | sin | 10 | NA |
| 602 | 24.76 | wind | 5.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 643 | 24.77 | wind | 5.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 803 | 24.82 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 20 | 8 |
| 956 | 24.87 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 16 | 18 |
| 965 | 24.88 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 968 | 24.88 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 3 | 6 |